Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p02380 Brassica napus
A05p38820 Brassica napus
A09p50270 Brassica napus
Aa31LG1G23640 Aethionema arabicum
Aa31LG3G2900 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2421 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.5278 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2672 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.527 Anthoceros agrestis
Actinidia17232 Actinidia chinensis
Actinidia28190 Actinidia chinensis
Actinidia39211 Actinidia chinensis
Ah.13g076520 Amaranthus hybridus
Ah.13g077060 Amaranthus hybridus
AL3G21650 Arabidopsis lyrata
AL4G39740 Arabidopsis lyrata
AL5G38910 Arabidopsis lyrata
Aqoxy1G00320 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1WCV8C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HQGJ2Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MHXL53 Arachis hypogaea
AT2G41640 Arabidopsis thaliana
AT3G10320 Arabidopsis thaliana
AT3G57380 Arabidopsis thaliana
ATR0326G076 Amborella trichopoda
ATR0782G162 Amborella trichopoda
ATR0950G006 Amborella trichopoda
Atru.chr1.1138 Acer truncatum
AUR62024475 Chenopodium quinoa
AUR62024514 Chenopodium quinoa
AUR62026064 Chenopodium quinoa
AUR62026105 Chenopodium quinoa
BcaC05g29477 Brassica carinata
BcaC07g40391 Brassica carinata
BcaNung04065 Brassica carinata
BcaNung06564 Brassica carinata
BolC4t21922H Brassica oleracea
BolC5t34440H Brassica oleracea
BolC8t50889H Brassica oleracea
BraA05t19232Z Brassica rapa
BraA05t22673Z Brassica rapa
BraA09t40477Z Brassica rapa
BraA09t40478Z Brassica rapa
C04p02820 Brassica napus
C05p57850 Brassica napus
C08p32780 Brassica napus
CAN.G1665.4 Capsicum annuum
CAN.G676.18 Capsicum annuum
CANSAT80G0738 Cannabis sativa
CANSAT80G2754 Cannabis sativa
CARHR084800 Cardamine hirsuta
CARHR136730 Cardamine hirsuta
CARHR167570 Cardamine hirsuta
Carub.0003s0950 Capsella rubella
Carub.0004s2390 Capsella rubella
Carub.0005s2422 Capsella rubella
Ca_08440_v3 Cicer arietinum L.
CBR_g57821 Chara braunii
Cc00_g29990 Coffea canephora
Cc06_g17740 Coffea canephora
CDE06G2295 Ceratophyllum demersum
CDE08G1646 Ceratophyllum demersum
Cfa016795 Carpinus fangiana
Cfa021093 Carpinus fangiana
Ciclev10004678m.g Citrus clementina
CiPaw.09G039500 Carya illinoinensis
CiPaw.10G034400 Carya illinoinensis
ClCG04G003530 Citrullus lanatus
COL.COLO4_20031 Corchorus olitorius
Cpa.g.sc329.1 Carica papaya
CsaV3_4G028900 Cucumis sativus L.
CSS0003726 Camellia sinensis var. sinensis
CSS0005153 Camellia sinensis var. sinensis
CSS0022630 Camellia sinensis var. sinensis
CSS0044933 Camellia sinensis var. sinensis
DCAR_013607 Daucus carota
DCAR_020501 Daucus carota
Dinv12403 Davidia involucrata
Dinv12404 Davidia involucrata
Dinv39628 Davidia involucrata
Duzib093G1872 Durio zibethinus
Duzib106G0357 Durio zibethinus
Duzib128G1089 Durio zibethinus
ECA247G0717 Erigeron canadensis
ECA248G0125 Erigeron canadensis
EL10Ac3g07108 Beta vulgaris
EL10Ac3g07141 Beta vulgaris
Eucgr.A02332 Eucalyptus grandis
Eucgr.A02333 Eucalyptus grandis
Eucgr.D00867 Eucalyptus grandis
Eucgr.F02597 Eucalyptus grandis
Eucgr.H03823 Eucalyptus grandis
Eucgr.K01068 Eucalyptus grandis
FAN02G0447 Fragaria x ananassa
FAN05G0687 Fragaria x ananassa
FAN05G3355 Fragaria x ananassa
FAN14G0120 Fragaria x ananassa
FAN14G3446 Fragaria x ananassa
FvH4_6g23970 Fragaria vesca
FvH4_6g24320 Fragaria vesca
Glyma.03G134800 Glycine max
Glyma.19G137400 Glycine max
Gohir.A02G108505 Gossypium hirsutum
Gohir.A09G121700 Gossypium hirsutum
Gohir.D03G069705 Gossypium hirsutum
Gohir.D09G117900 Gossypium hirsutum
Gorai.003G090500 Gossypium raimondii
Gorai.006G136200 Gossypium raimondii
GSVIVG01033248001 Vitis vinifera
HanXRQChr10g0299611 Helianthus annuus
HanXRQChr13g0396461 Helianthus annuus
Haze_19823 Corylus avellana
Haze_19828 Corylus avellana
Hma1.2p1_0788F.1_g218050 Hydrangea macrophylla
HPP92_002968 Vanilla planifolia
HPP92_012084 Vanilla planifolia
HPP92_012085 Vanilla planifolia
HPP92_025060 Vanilla planifolia
Hund19130 Selenicereus undatus
Hund19143 Selenicereus undatus
Hund24691 Selenicereus undatus
Hund29935 Selenicereus undatus
Lalb_Chr01g0017371 Lupinus albus
Lalb_Chr20g0110621 Lupinus albus
Lalb_Chr25g0287251 Lupinus albus
Lj1g0006408 Lotus japonicus
Lju124C45T5 Lonicera japonica
Lsat_1_v5_gn_5_161220 Lactuca sativa
Lsat_1_v5_gn_9_31341 Lactuca sativa
Manes.08G052900 Manihot esculenta
Mapoly0004s0216 Marchantia polymorpha
Mapoly0053s0060 Marchantia polymorpha
Mapoly0109s0006 Marchantia polymorpha
MBI17_g16496_MAGBIO Magnolia biondii
MBI17_g16497_MAGBIO Magnolia biondii
MBI17_g35866_MAGBIO Magnolia biondii
MD00G1122300 Malus domestica
MD12G1075400 Malus domestica
MD12G1075900 Malus domestica
MD12G1211700 Malus domestica
MD14G1073900 Malus domestica
MD14G1074100 Malus domestica
MD14G1074200 Malus domestica
MD14G1074300 Malus domestica
Medtr7g091270 Medicago truncatula
Medtr7g091280 Medicago truncatula
MELO3C019188.2 Cucumis melo
Migut.J01741 Erythranthe guttata
MSTRG.19851 Avicennia marina
MSTRG.6417 Avicennia marina
Nitab4.5_0000364g0040 Nicotiana tabacum
Nitab4.5_0003307g0040 Nicotiana tabacum
Nitab4.5_0007721g0010 Nicotiana tabacum
Nitab4.5_0012330g0010 Nicotiana tabacum
Nn2g15173 Nelumbo nucifera
Nn7g36346 Nelumbo nucifera
Oeu023113.2 Olea europaea
Oeu062944.1 Olea europaea
Os01g0498300 Oryza sativa ssp. japonica
Os01g0956200 Oryza sativa ssp. japonica
Os05g0391600 Oryza sativa ssp. japonica
Os07g0657400 Oryza sativa ssp. japonica
Os11g0575500 Oryza sativa ssp. japonica
Peaxi162Scf00109g00144 Petunia axillaris
Peaxi162Scf00130g00521 Petunia axillaris
PGR004G1001 Punica granatum
PGSC0003DMG400023731 Solanum tuberosum
PGSC0003DMG400027288 Solanum tuberosum
Phvul.001G130200 Phaseolus vulgaris
Potri.006G048500 Populus trichocarpa
Potri.016G057000 Populus trichocarpa
Pp3c10_25730 Physcomitrium patens
Pp3c5_5440 Physcomitrium patens
Prupe.7G055600 Prunus persica
Prupe.7G055700 Prunus persica
Psat3g074000 Pisum sativum
PSO339G5280 Papaver somniferum
PSO384G3683 Papaver somniferum
QL03p070610 Quercus lobata
QL07p002654 Quercus lobata
RcHm_v2.0_Chr3g0483201 Rosa chinensis
RcHm_v2.0_Chr3g0483211 Rosa chinensis
RcHm_v2.0_Chr3g0483241 Rosa chinensis
Rhsim04G0102800 Rhododendron simsii
Rhsim04G0103100 Rhododendron simsii
Sabra06G0033800 Salix brachista
Sabra16G0059900 Salix brachista
SalBow6G1671 Salvia bowleyana
SalBow6G5729 Salvia bowleyana
SalBow8G0094 Salvia bowleyana
Sc19g0006590 Simmondsia chinensis
Sed0007270 Sechium edule
Sed0014005 Sechium edule
SEGI_13854 Sequoiadendron giganteum
SEGI_20175 Sequoiadendron giganteum
SEGI_23129 Sequoiadendron giganteum
SEGI_31739 Sequoiadendron giganteum
SEGI_36458 Sequoiadendron giganteum
SEGI_39686 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30393 Striga asiatica
SGA_v2.0_scaffold105G30396 Striga asiatica
SGA_v2.0_scaffold19G08804 Striga asiatica
SMO334G0120 Selaginella moellendorffii
SMO347G0340 Selaginella moellendorffii
SMO347G0369 Selaginella moellendorffii
SMO348G0047 Selaginella moellendorffii
Solyc04g016180.3 Solanum lycopersicum
Solyc10g080010.2 Solanum lycopersicum
Sopen04g008220 Solanum pennellii
Sopen10g030620 Solanum pennellii
Sp3g08590 Schrenkiella parvula
Sp4g23890 Schrenkiella parvula
Sp5g05220 Schrenkiella parvula
TAR633G1579 Trochodendron aralioides
TAR636G0245 Trochodendron aralioides
TAR636G0625 Trochodendron aralioides
THA.LOC104802078 Tarenaya hassleriana
THA.LOC104804701 Tarenaya hassleriana
THA.LOC104824432 Tarenaya hassleriana
THA.LOC104824501 Tarenaya hassleriana
THA.LOC104826894 Tarenaya hassleriana
Thecc.05G150400 Theobroma cacao
Thhalv10005928m.g Eutrema salsugineum
Thhalv10007530m.g Eutrema salsugineum
Thhalv10008470m.g Eutrema salsugineum
Thhalv10016562m.g Eutrema salsugineum
Thhalv10020581m.g Eutrema salsugineum
TPR.G18248 Trifolium pratense
TWI53G1763 Tripterygium wilfordii
unitig_22.g6047 Utricularia gibba
unitig_22.g6049 Utricularia gibba
vmacro09070 Vaccinium macrocarpon
VMungo1383G2216 Vigna mungo
Zm00001eb110660 Zea mays
Zm00001eb127100 Zea mays
Zm00001eb287250 Zea mays
Zm00001eb329600 Zea mays
Zm00001eb341770 Zea mays
Zm00001eb350830 Zea mays
Zm00001eb362690 Zea mays

User provided reference genes

Program Settings