Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p09150 Brassica napus
A06p47650 Brassica napus
A07p00510 Brassica napus
A09p20600 Brassica napus
Aa31LG2G21610 Aethionema arabicum
Aa31LG5G3410 Aethionema arabicum
Actinidia09495 Actinidia chinensis
Actinidia23736 Actinidia chinensis
Actinidia23737 Actinidia chinensis
Actinidia23738 Actinidia chinensis
Actinidia30105 Actinidia chinensis
Actinidia30106 Actinidia chinensis
Actinidia37569 Actinidia chinensis
Ah.08g213810 Amaranthus hybridus
Ah.15g093430 Amaranthus hybridus
AL3G47850 Arabidopsis lyrata
AL7G23740 Arabidopsis lyrata
AL8G16250 Arabidopsis lyrata
Aqoxy5G00058 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9PQ9XF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CSY4UT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IL7968 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z27S6C Arachis hypogaea
AT2G20240 Arabidopsis thaliana
AT4G28760 Arabidopsis thaliana
AT5G43880 Arabidopsis thaliana
ATR0787G113 Amborella trichopoda
Atru.chr5.1923 Acer truncatum
AUR62008853 Chenopodium quinoa
AUR62025393 Chenopodium quinoa
BcaB03g16815 Brassica carinata
BcaB04g19327 Brassica carinata
BcaB07g30998 Brassica carinata
BcaC04g21897 Brassica carinata
BcaC06g31673 Brassica carinata
BcaC06g34617 Brassica carinata
BcaC06g36699 Brassica carinata
BcaNung01367 Brassica carinata
BcaNung07247 Brassica carinata
BcaNung07248 Brassica carinata
BolC1t01033H Brassica oleracea
BolC7t40533H Brassica oleracea
BolC7t43172H Brassica oleracea
BolC9t55507H Brassica oleracea
BraA01t00861Z Brassica rapa
BraA07t27845Z Brassica rapa
BraA09t37666Z Brassica rapa
C01p10740 Brassica napus
C07p00960 Brassica napus
C07p26420 Brassica napus
C09p26040 Brassica napus
CANSAT01G1291 Cannabis sativa
CARHR110730 Cardamine hirsuta
CARHR179550 Cardamine hirsuta
CARHR236550 Cardamine hirsuta
Carub.0003s3457 Capsella rubella
Carub.0007s1188 Capsella rubella
Carub.0008s0473 Capsella rubella
Ca_08766_v3 Cicer arietinum L.
Ca_09626_v3 Cicer arietinum L.
Cc01_g17490 Coffea canephora
CDE02G0265 Ceratophyllum demersum
CDE09G0203 Ceratophyllum demersum
CDE09G0229 Ceratophyllum demersum
Cfa002513 Carpinus fangiana
Ciclev10018694m.g Citrus clementina
CiPaw.03G273400 Carya illinoinensis
CiPaw.04G192400 Carya illinoinensis
ClCG07G001590 Citrullus lanatus
ClCG09G009430 Citrullus lanatus
COL.COLO4_34722 Corchorus olitorius
Cpa.g.sc8.210 Carica papaya
Cpa.g.sc8.211 Carica papaya
CsaV3_3G028590 Cucumis sativus L.
CsaV3_7G025430 Cucumis sativus L.
CSS0005557 Camellia sinensis var. sinensis
DCAR_000547 Daucus carota
DCAR_004699 Daucus carota
DCAR_012619 Daucus carota
DCAR_018538 Daucus carota
Dinv19246 Davidia involucrata
Dinv43037 Davidia involucrata
Dinv43038 Davidia involucrata
Duzib133G1342 Durio zibethinus
Duzib138G1260 Durio zibethinus
Duzib211G0696 Durio zibethinus
ECA236G3239 Erigeron canadensis
ECA247G3589 Erigeron canadensis
EL10Ac7g17756 Beta vulgaris
Eucgr.H00827 Eucalyptus grandis
Eucgr.K03587 Eucalyptus grandis
FAN14G0266 Fragaria x ananassa
FAN15G3258 Fragaria x ananassa
FAN24G0991 Fragaria x ananassa
FAN27G3465 Fragaria x ananassa
FvH4_2g19940 Fragaria vesca
Glyma.03G169700 Glycine max
Glyma.10G042300 Glycine max
Glyma.13G129700 Glycine max
Glyma.19G170900 Glycine max
Gohir.A07G202500 Gossypium hirsutum
Gohir.A08G192600 Gossypium hirsutum
Gohir.D07G208700 Gossypium hirsutum
Gohir.D08G210600 Gossypium hirsutum
Gorai.001G235600 Gossypium raimondii
Gorai.004G223300 Gossypium raimondii
GSVIVG01028483001 Vitis vinifera
HanXRQChr10g0280321 Helianthus annuus
HanXRQChr10g0287231 Helianthus annuus
HanXRQChr13g0409001 Helianthus annuus
HanXRQChr15g0468501 Helianthus annuus
Haze_24739 Corylus avellana
Hma1.2p1_0825F.1_g224750 Hydrangea macrophylla
Hma1.2p1_1224F.1_g268500 Hydrangea macrophylla
Hma1.2p1_1393F.1_g280250 Hydrangea macrophylla
HPP92_005011 Vanilla planifolia
HPP92_020771 Vanilla planifolia
HPP92_027297 Vanilla planifolia
HPP92_027298 Vanilla planifolia
Hund05501 Selenicereus undatus
Hund05539 Selenicereus undatus
Hund18344 Selenicereus undatus
Lalb_Chr01g0019431 Lupinus albus
Lalb_Chr06g0170921 Lupinus albus
Lalb_Chr20g0113371 Lupinus albus
Lalb_Chr25g0289721 Lupinus albus
Lj1C80T5 Lonicera japonica
Lj1g0022994 Lotus japonicus
Lj2C1137G13 Lonicera japonica
Lj5g0017917 Lotus japonicus
Lsat_1_v5_gn_8_90361 Lactuca sativa
Lsat_1_v5_gn_9_12080 Lactuca sativa
Manes.12G040100 Manihot esculenta
Manes.13G042600 Manihot esculenta
MBI07_g08924_MAGBIO Magnolia biondii
MD05G1183600 Malus domestica
MD10G1171400 Malus domestica
Medtr1g069190 Medicago truncatula
Medtr7g099410 Medicago truncatula
MELO3C012813.2 Cucumis melo
MELO3C024147.2 Cucumis melo
Migut.D00499 Erythranthe guttata
Migut.N02243 Erythranthe guttata
Migut.N02244 Erythranthe guttata
MSTRG.17533 Avicennia marina
MSTRG.18369 Avicennia marina
MSTRG.21446 Avicennia marina
Nitab4.5_0001557g0040 Nicotiana tabacum
Nitab4.5_0002330g0010 Nicotiana tabacum
Nitab4.5_0014701g0010 Nicotiana tabacum
Nitab4.5_0023523g0010 Nicotiana tabacum
Nn1g03080 Nelumbo nucifera
Nn3g19851 Nelumbo nucifera
Oeu015447.1 Olea europaea
Oeu039642.1 Olea europaea
Oeu052101.1 Olea europaea
Oeu052102.1 Olea europaea
Os02g0617100 Oryza sativa ssp. japonica
Os02g0816400 Oryza sativa ssp. japonica
Os03g0143700 Oryza sativa ssp. japonica
Os04g0506900 Oryza sativa ssp. japonica
Peaxi162Scf00052g02120 Petunia axillaris
Peaxi162Scf00517g00316 Petunia axillaris
PGR044G1424 Punica granatum
PGR083G2315 Punica granatum
PGSC0003DMG400018957 Solanum tuberosum
PGSC0003DMG400020083 Solanum tuberosum
Phvul.001G168100 Phaseolus vulgaris
Phvul.007G155800 Phaseolus vulgaris
Potri.002G253600 Populus trichocarpa
Potri.014G194600 Populus trichocarpa
Prupe.8G209800 Prunus persica
Psat3g050280 Pisum sativum
Psat6g065080 Pisum sativum
PSO764G0032 Papaver somniferum
PSO832G1375 Papaver somniferum
QL09p043739 Quercus lobata
QL09p043841 Quercus lobata
RcHm_v2.0_Chr6g0285601 Rosa chinensis
Rhsim01G0258600 Rhododendron simsii
Rhsim13G0041700 Rhododendron simsii
Sabra02G0192800 Salix brachista
SalBow6G0913 Salvia bowleyana
Sc05g0002490 Simmondsia chinensis
Sed0000267 Sechium edule
Sed0013807 Sechium edule
Sed0024831 Sechium edule
Sed0025022 Sechium edule
SEGI_29651 Sequoiadendron giganteum
SEGI_39803 Sequoiadendron giganteum
SGA_v2.0_scaffold1677G54010 Striga asiatica
SGA_v2.0_scaffold1G00680 Striga asiatica
SGA_v2.0_scaffold3G01594 Striga asiatica
SGA_v2.0_scaffold42G16160 Striga asiatica
SHI26851 Sapria himalayana
SMO358G0274 Selaginella moellendorffii
Solyc06g083660.4 Solanum lycopersicum
Solyc09g063090.4 Solanum lycopersicum
Sopen06g035050 Solanum pennellii
Sopen09g025250 Solanum pennellii
Sp1g25260 Schrenkiella parvula
Sp2g08680 Schrenkiella parvula
Sp3g33470 Schrenkiella parvula
Sp7g26770 Schrenkiella parvula
TAR362G0869 Trochodendron aralioides
TAR365G0182 Trochodendron aralioides
TAR365G0493 Trochodendron aralioides
TAR365G0836 Trochodendron aralioides
TAR365G1124 Trochodendron aralioides
TAR633G0965 Trochodendron aralioides
TAR636G3291 Trochodendron aralioides
THA.LOC104804028 Tarenaya hassleriana
THA.LOC104814547 Tarenaya hassleriana
THA.LOC104826058 Tarenaya hassleriana
Thecc.01G245100 Theobroma cacao
Thhalv10001917m.g Eutrema salsugineum
Thhalv10003146m.g Eutrema salsugineum
Thhalv10024350m.g Eutrema salsugineum
TPR.G25867 Trifolium pratense
TPR.G27581 Trifolium pratense
TPR.G7555 Trifolium pratense
TWI14G1051 Tripterygium wilfordii
TWI23G0164 Tripterygium wilfordii
TWI59G1133 Tripterygium wilfordii
unitig_0.g172 Utricularia gibba
unitig_22.g5300 Utricularia gibba
unitig_578.g16432 Utricularia gibba
unitig_60.g25728 Utricularia gibba
unitig_699.g19327 Utricularia gibba
unitig_8.g3745 Utricularia gibba
vmacro02723 Vaccinium macrocarpon
vmacro14776 Vaccinium macrocarpon
VMungo0720G2819 Vigna mungo
VMungo1383G1619 Vigna mungo
Zm00001eb003540 Zea mays
Zm00001eb077920 Zea mays
Zm00001eb191440 Zea mays
Zm00001eb247160 Zea mays
Zm00001eb258860 Zea mays
Zm00001eb426200 Zea mays

User provided reference genes

Program Settings