Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p04890 Brassica napus
A05p30400 Brassica napus
A05p43430 Brassica napus
A08p17640 Brassica napus
Aa31LG5G16720 Aethionema arabicum
Aa31LG8G6040 Aethionema arabicum
Actinidia00442 Actinidia chinensis
Actinidia12950 Actinidia chinensis
Actinidia23273 Actinidia chinensis
Ah.01g003620 Amaranthus hybridus
Ah.01g015810 Amaranthus hybridus
Ah.06g186120 Amaranthus hybridus
AL3G32640 Arabidopsis lyrata
AL7G18170 Arabidopsis lyrata
Aqoxy5G01238 Aquilegia oxysepala
Aqoxy6G01327 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.P8STGX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X00W6P Arachis hypogaea
AT3G19240 Arabidopsis thaliana
AT4G33400 Arabidopsis thaliana
ATR0730G066 Amborella trichopoda
Atru.chr13.691 Acer truncatum
Atru.chr5.2703 Acer truncatum
AUR62011416 Chenopodium quinoa
AUR62016642 Chenopodium quinoa
BcaB03g12801 Brassica carinata
BcaB04g20716 Brassica carinata
BcaB06g25981 Brassica carinata
BcaC01g00992 Brassica carinata
BcaC05g28518 Brassica carinata
BcaC05g29891 Brassica carinata
BcaC05g30242 Brassica carinata
BcaC05g30293 Brassica carinata
BcaC09g52143 Brassica carinata
BcaC09g52144 Brassica carinata
BcaC09g52152 Brassica carinata
BolC1t00508H Brassica oleracea
BolC3t20964H Brassica oleracea
BolC5t33325H Brassica oleracea
BolC5t34965H Brassica oleracea
BraA01t00471Z Brassica rapa
BraA05t23083Z Brassica rapa
BraA08t33715Z Brassica rapa
C01p05290 Brassica napus
C03p86700 Brassica napus
C05p45990 Brassica napus
CAN.G1041.14 Capsicum annuum
CAN.G371.9 Capsicum annuum
CANSAT25G3542 Cannabis sativa
CANSAT78G1050 Cannabis sativa
CARHR094650 Cardamine hirsuta
CARHR241450 Cardamine hirsuta
Carub.0003s1907 Capsella rubella
Carub.0007s0709 Capsella rubella
Ca_15950_v3 Cicer arietinum L.
Ca_18683_v3 Cicer arietinum L.
CBR_g46624 Chara braunii
Cc02_g18780 Coffea canephora
Cc10_g04180 Coffea canephora
CDE10G0257 Ceratophyllum demersum
Cfa004518 Carpinus fangiana
Cfa018552 Carpinus fangiana
Ciclev10000554m.g Citrus clementina
Ciclev10028011m.g Citrus clementina
CiPaw.05G006500 Carya illinoinensis
CiPaw.06G172600 Carya illinoinensis
CiPaw.15G057500 Carya illinoinensis
ClCG05G009980 Citrullus lanatus
ClCG05G019860 Citrullus lanatus
COL.COLO4_26506 Corchorus olitorius
COL.COLO4_32657 Corchorus olitorius
Cpa.g.sc49.15 Carica papaya
Cpa.g.sc62.12 Carica papaya
Cre16.g657550 Chlamydomonas reinhardtii
CsaV3_3G018590 Cucumis sativus L.
CsaV3_4G034300 Cucumis sativus L.
CSS0013793 Camellia sinensis var. sinensis
CSS0019457 Camellia sinensis var. sinensis
CSS0034593 Camellia sinensis var. sinensis
DCAR_019455 Daucus carota
DCAR_022024 Daucus carota
DCAR_027727 Daucus carota
Dinv35963 Davidia involucrata
Dinv39317 Davidia involucrata
Dinv42156 Davidia involucrata
Duzib041G0202 Durio zibethinus
Duzib052G0997 Durio zibethinus
Duzib093G2102 Durio zibethinus
Duzib132G0589 Durio zibethinus
ECA232G0383 Erigeron canadensis
ECA236G4001 Erigeron canadensis
EL10Ac9g21808 Beta vulgaris
Eucgr.F02355 Eucalyptus grandis
Eucgr.I01154 Eucalyptus grandis
FAN15G1169 Fragaria x ananassa
FAN20G0985 Fragaria x ananassa
FAN24G1638 Fragaria x ananassa
FAN27G1047 Fragaria x ananassa
FvH4_2g06100 Fragaria vesca
FvH4_2g34470 Fragaria vesca
Glyma.02G132700 Glycine max
Glyma.04G038800 Glycine max
Glyma.06G039800 Glycine max
Glyma.07G212300 Glycine max
Gohir.A01G007000 Gossypium hirsutum
Gohir.A03G189600 Gossypium hirsutum
Gohir.A06G018600 Gossypium hirsutum
Gohir.D01G007100 Gossypium hirsutum
Gohir.D02G210100 Gossypium hirsutum
Gohir.D06G016800 Gossypium hirsutum
Gorai.002G008100 Gossypium raimondii
Gorai.005G238100 Gossypium raimondii
Gorai.010G019700 Gossypium raimondii
GSVIVG01009497001 Vitis vinifera
GSVIVG01031748001 Vitis vinifera
HanXRQChr04g0128211 Helianthus annuus
HanXRQChr09g0259241 Helianthus annuus
HanXRQChr09g0267611 Helianthus annuus
HanXRQChr14g0439571 Helianthus annuus
Haze_10081 Corylus avellana
Haze_17527 Corylus avellana
Hma1.2p1_0370F.1_g137790 Hydrangea macrophylla
Hma1.2p1_0982F.1_g243990 Hydrangea macrophylla
HPP92_010760 Vanilla planifolia
HPP92_017146 Vanilla planifolia
HPP92_017157 Vanilla planifolia
Hund00336 Selenicereus undatus
Hund06176 Selenicereus undatus
Lalb_Chr08g0245351 Lupinus albus
Lalb_Chr09g0328291 Lupinus albus
Lalb_Chr23g0267121 Lupinus albus
Lj1g0014993 Lotus japonicus
Lj4A773T43 Lonicera japonica
Lj4g0008722 Lotus japonicus
Lj5A209T79 Lonicera japonica
Lsat_1_v5_gn_4_125840 Lactuca sativa
Lsat_1_v5_gn_7_86941 Lactuca sativa
Manes.07G083800 Manihot esculenta
Manes.10G056200 Manihot esculenta
Manes.18G036900 Manihot esculenta
Mapoly0001s0432 Marchantia polymorpha
MBI02_g02995_MAGBIO Magnolia biondii
MBI06_g36650_MAGBIO Magnolia biondii
MCO09G587 Micromonas commoda
MD05G1080700 Malus domestica
MD08G1101800 Malus domestica
MD15G1083300 Malus domestica
Medtr3g101680 Medicago truncatula
Medtr4g086240 Medicago truncatula
MELO3C016750.2 Cucumis melo
MELO3C019507.2 Cucumis melo
Migut.B00346 Erythranthe guttata
Migut.C00581 Erythranthe guttata
MSTRG.1346 Avicennia marina
MSTRG.16746 Avicennia marina
MSTRG.25093 Avicennia marina
Nitab4.5_0000287g0300 Nicotiana tabacum
Nitab4.5_0003427g0040 Nicotiana tabacum
Nitab4.5_0005249g0060 Nicotiana tabacum
Nitab4.5_0005758g0040 Nicotiana tabacum
Nn1g04867 Nelumbo nucifera
Nn5g30324 Nelumbo nucifera
Oeu007287.1 Olea europaea
Oeu013709.2 Olea europaea
Oeu049973.1 Olea europaea
Os02g0178500 Oryza sativa ssp. japonica
Os02g0789600 Oryza sativa ssp. japonica
Peaxi162Scf00016g01821 Petunia axillaris
Peaxi162Scf00252g00914 Petunia axillaris
PGR031G3473 Punica granatum
PGR142G2705 Punica granatum
PGSC0003DMG400007976 Solanum tuberosum
PGSC0003DMG400025798 Solanum tuberosum
Phvul.009G065000 Phaseolus vulgaris
Potri.002G126500 Populus trichocarpa
Potri.004G141300 Populus trichocarpa
Potri.009G102000 Populus trichocarpa
Potri.014G029600 Populus trichocarpa
Pp3c14_6590 Physcomitrium patens
Pp3c15_8660 Physcomitrium patens
Pp3c17_14240 Physcomitrium patens
Prupe.1G435800 Prunus persica
Prupe.8G124300 Prunus persica
Psat5g043240 Pisum sativum
Psat7g124800 Pisum sativum
PSO170G3040 Papaver somniferum
PSO210G3863 Papaver somniferum
PSO541G2054 Papaver somniferum
PSO675G2124 Papaver somniferum
QL02p004888 Quercus lobata
QL11p035959 Quercus lobata
RcHm_v2.0_Chr6g0257121 Rosa chinensis
RcHm_v2.0_Chr6g0307901 Rosa chinensis
Rhsim06G0049700 Rhododendron simsii
Rhsim11G0165700 Rhododendron simsii
Sabra09G0078000 Salix brachista
Sabra14G0020400 Salix brachista
SalBow6G0038 Salvia bowleyana
SalBow7G3924 Salvia bowleyana
Sc15g0006150 Simmondsia chinensis
Sc15g0006230 Simmondsia chinensis
Sed0024324 Sechium edule
Sed0026441 Sechium edule
Sed0027251 Sechium edule
SEGI_03467 Sequoiadendron giganteum
SEGI_40294 Sequoiadendron giganteum
SGA_v2.0_scaffold29G12083 Striga asiatica
SGA_v2.0_scaffold32G13067 Striga asiatica
SGA_v2.0_scaffold330G48892 Striga asiatica
SHI08276 Sapria himalayana
SMO197G0108 Selaginella moellendorffii
Solyc01g108250.3 Solanum lycopersicum
Solyc04g078940.3 Solanum lycopersicum
Sopen01g050470 Solanum pennellii
Sopen04g032540 Solanum pennellii
Sp3g17320 Schrenkiella parvula
Sp7g31100 Schrenkiella parvula
TAR381G0374 Trochodendron aralioides
TAR381G1124 Trochodendron aralioides
TAR625G1172 Trochodendron aralioides
THA.LOC104803451 Tarenaya hassleriana
THA.LOC104804431 Tarenaya hassleriana
Thecc.02G100700 Theobroma cacao
Thecc.08G007800 Theobroma cacao
Thhalv10020256m.g Eutrema salsugineum
Thhalv10024654m.g Eutrema salsugineum
TPR.G24204 Trifolium pratense
TPR.G25393 Trifolium pratense
TPR.G25411 Trifolium pratense
TWI36G0221 Tripterygium wilfordii
TWI36G0253 Tripterygium wilfordii
TWI79G0036 Tripterygium wilfordii
unitig_21.g20745 Utricularia gibba
unitig_26.g9817 Utricularia gibba
unitig_61.g26003 Utricularia gibba
vmacro02204 Vaccinium macrocarpon
vmacro21523 Vaccinium macrocarpon
VMungo1309G0342 Vigna mungo
VMungo1309G0661 Vigna mungo
Zm00001eb192690 Zea mays
Zm00001eb206560 Zea mays
Zm00001eb233840 Zea mays

User provided reference genes

Program Settings