Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p22090 Brassica napus
A07p19490 Brassica napus
A09p66370 Brassica napus
Aa31LG5G7170 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1478 Anthoceros agrestis
Actinidia13153 Actinidia chinensis
Actinidia23925 Actinidia chinensis
Actinidia26477 Actinidia chinensis
Actinidia34421 Actinidia chinensis
Ah.08g219760 Amaranthus hybridus
Ah.15g097760 Amaranthus hybridus
AL1G17690 Arabidopsis lyrata
AL4G23650 Arabidopsis lyrata
Aqoxy1G00907 Aquilegia oxysepala
Aqoxy1G00911 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0Y9XYY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D17M73 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WG1DZE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YS6FHA Arachis hypogaea
AT1G07510 Arabidopsis thaliana
AT2G29080 Arabidopsis thaliana
ATR0686G155 Amborella trichopoda
ATR0686G187 Amborella trichopoda
ATR0686G213 Amborella trichopoda
Atru.chr3.3973 Acer truncatum
Atru.chr8.1993 Acer truncatum
AUR62001758 Chenopodium quinoa
AUR62009544 Chenopodium quinoa
BcaB02g10230 Brassica carinata
BcaB06g28273 Brassica carinata
BcaC02g11043 Brassica carinata
BcaC07g41994 Brassica carinata
BcaC07g42473 Brassica carinata
BolC4t23706H Brassica oleracea
BolC4t27347H Brassica oleracea
BolC8t52581H Brassica oleracea
BraA04t17773Z Brassica rapa
BraA07t29655Z Brassica rapa
BraA09t41974Z Brassica rapa
C04p21870 Brassica napus
C04p58190 Brassica napus
C08p50540 Brassica napus
CAN.G1293.4 Capsicum annuum
CAN.G92.15 Capsicum annuum
CAN.G92.17 Capsicum annuum
CAN.G92.23 Capsicum annuum
CANSAT54G0527 Cannabis sativa
CARHR007280 Cardamine hirsuta
CARHR122360 Cardamine hirsuta
Carub.0001s0683 Capsella rubella
Carub.0004s1008 Capsella rubella
Ca_19157_v3 Cicer arietinum L.
CBR_g45455 Chara braunii
Cc01_g13140 Coffea canephora
Cc06_g02500 Coffea canephora
CDE02G0439 Ceratophyllum demersum
CDE08G0036 Ceratophyllum demersum
Cfa011524 Carpinus fangiana
Ciclev10011087m.g Citrus clementina
Ciclev10027837m.g Citrus clementina
CiPaw.10G146600 Carya illinoinensis
CiPaw.13G091400 Carya illinoinensis
CiPaw.14G067300 Carya illinoinensis
ClCG02G020010 Citrullus lanatus
ClCG04G008090 Citrullus lanatus
COL.COLO4_14779 Corchorus olitorius
COL.COLO4_18548 Corchorus olitorius
Cpa.g.sc81.117 Carica papaya
Cre01.g019850 Chlamydomonas reinhardtii
CsaV3_4G025100 Cucumis sativus L.
CsaV3_6G016700 Cucumis sativus L.
CSS0008560 Camellia sinensis var. sinensis
CSS0020099 Camellia sinensis var. sinensis
CSS0033381 Camellia sinensis var. sinensis
CSS0038960 Camellia sinensis var. sinensis
DCAR_007438 Daucus carota
DCAR_010405 Daucus carota
Dinv06262 Davidia involucrata
Dinv35584 Davidia involucrata
Dinv37160 Davidia involucrata
Duzib093G1630 Durio zibethinus
Duzib106G1009 Durio zibethinus
Duzib150G0241 Durio zibethinus
Duzib168G1631 Durio zibethinus
ECA247G0932 Erigeron canadensis
ECA248G1873 Erigeron canadensis
EL10Ac7g16046 Beta vulgaris
Eucgr.B02323 Eucalyptus grandis
Eucgr.B02324 Eucalyptus grandis
Eucgr.B02325 Eucalyptus grandis
FAN02G2965 Fragaria x ananassa
FAN05G5381 Fragaria x ananassa
FAN09G3297 Fragaria x ananassa
FAN11G3739 Fragaria x ananassa
FAN14G1238 Fragaria x ananassa
FAN16G3230 Fragaria x ananassa
FAN21G0607 Fragaria x ananassa
FAN25G3587 Fragaria x ananassa
FvH4_3g36790 Fragaria vesca
FvH4_6g13480 Fragaria vesca
Glyma.11G137700 Glycine max
Glyma.12G061200 Glycine max
Glyma.12G061400 Glycine max
Gohir.A01G221800 Gossypium hirsutum
Gohir.A05G094200 Gossypium hirsutum
Gohir.A09G154966 Gossypium hirsutum
Gohir.D01G211400 Gossypium hirsutum
Gohir.D05G094700 Gossypium hirsutum
Gohir.D09G150500 Gossypium hirsutum
Gorai.002G257200 Gossypium raimondii
Gorai.006G171800 Gossypium raimondii
Gorai.009G097900 Gossypium raimondii
GSVIVG01024927001 Vitis vinifera
HanXRQChr01g0003301 Helianthus annuus
HanXRQChr12g0374231 Helianthus annuus
Haze_20815 Corylus avellana
Haze_24129 Corylus avellana
Haze_26820 Corylus avellana
Haze_26848 Corylus avellana
Hma1.2p1_0615F.1_g189800 Hydrangea macrophylla
Hma1.2p1_0757F.1_g213270 Hydrangea macrophylla
HPP92_000807 Vanilla planifolia
Hund04937 Selenicereus undatus
Lalb_Chr01g0003541 Lupinus albus
Lalb_Chr01g0003561 Lupinus albus
Lalb_Chr03g0026511 Lupinus albus
Lalb_Chr19g0137901 Lupinus albus
Lj2A1066T67 Lonicera japonica
Lj2A93T82 Lonicera japonica
Lj3g0008176 Lotus japonicus
Lj3g0016271 Lotus japonicus
Lsat_1_v5_gn_5_154920 Lactuca sativa
Lsat_1_v5_gn_9_23940 Lactuca sativa
Manes.01G171200 Manihot esculenta
Manes.08G084431 Manihot esculenta
Manes.09G092500 Manihot esculenta
Mapoly0007s0192 Marchantia polymorpha
MBI05_g28373_MAGBIO Magnolia biondii
MBI14_g12126_MAGBIO Magnolia biondii
MCO12G233 Micromonas commoda
MD03G1088300 Malus domestica
MD03G1088400 Malus domestica
MD04G1130900 Malus domestica
MD11G1097400 Malus domestica
Medtr0376s0020 Medicago truncatula
Medtr1g044600 Medicago truncatula
Medtr4g064350 Medicago truncatula
Medtr6g059690 Medicago truncatula
Medtr7g078570 Medicago truncatula
Medtr7g096060 Medicago truncatula
Medtr8g107160 Medicago truncatula
MELO3C003139.2 Cucumis melo
MELO3C025899.2 Cucumis melo
Migut.J00319 Erythranthe guttata
Migut.N00898 Erythranthe guttata
MSTRG.17825 Avicennia marina
MSTRG.19076 Avicennia marina
MSTRG.5654 Avicennia marina
Nitab4.5_0000349g0340 Nicotiana tabacum
Nitab4.5_0000527g0220 Nicotiana tabacum
Nitab4.5_0000705g0160 Nicotiana tabacum
Nitab4.5_0001911g0110 Nicotiana tabacum
Nitab4.5_0009302g0010 Nicotiana tabacum
Nitab4.5_0014770g0010 Nicotiana tabacum
Nn2g11151 Nelumbo nucifera
Nn2g13391 Nelumbo nucifera
Oeu001862.1 Olea europaea
Oeu004164.1 Olea europaea
Oeu026708.1 Olea europaea
Os01g0842600 Oryza sativa ssp. japonica
Os05g0458400 Oryza sativa ssp. japonica
Peaxi162Scf00165g00821 Petunia axillaris
Peaxi162Scf00330g00618 Petunia axillaris
Peaxi162Scf00330g00620 Petunia axillaris
Peaxi162Scf00330g00714 Petunia axillaris
PGR102G0952 Punica granatum
PGSC0003DMG400008828 Solanum tuberosum
Phvul.011G062800 Phaseolus vulgaris
Phvul.011G162000 Phaseolus vulgaris
Potri.009G033600 Populus trichocarpa
Potri.016G099800 Populus trichocarpa
Pp3c11_1240 Physcomitrium patens
Pp3c1_2390 Physcomitrium patens
Pp3c2_30820 Physcomitrium patens
PRCOL_00001948 Prasinoderma coloniale
Prupe.6G072600 Prunus persica
Prupe.6G257400 Prunus persica
Psat7g003160 Pisum sativum
Psat7g003200 Pisum sativum
Psat7g209680 Pisum sativum
PSO063G1802 Papaver somniferum
PSO339G6640 Papaver somniferum
QL01p030988 Quercus lobata
QL07p048749 Quercus lobata
RcHm_v2.0_Chr3g0466351 Rosa chinensis
RcHm_v2.0_Chr5g0065851 Rosa chinensis
Rhsim01G0230600 Rhododendron simsii
Rhsim04G0158400 Rhododendron simsii
Sabra09G0024000 Salix brachista
Sabra16G0101000 Salix brachista
SalBow2G2909 Salvia bowleyana
Sc12g0001330 Simmondsia chinensis
Sc12g0001340 Simmondsia chinensis
Sc12g0001350 Simmondsia chinensis
Sc21g0005930 Simmondsia chinensis
Sed0016908 Sechium edule
Sed0026085 Sechium edule
SEGI_12855 Sequoiadendron giganteum
SGA_v2.0_scaffold126G33774 Striga asiatica
SGA_v2.0_scaffold75G24956 Striga asiatica
SMO198G0029 Selaginella moellendorffii
SMO340G0208 Selaginella moellendorffii
Solyc09g010950.3 Solanum lycopersicum
Solyc10g086540.3 Solanum lycopersicum
Solyc10g086550.2 Solanum lycopersicum
Sopen09g005670 Solanum pennellii
Sopen10g035920 Solanum pennellii
Sopen10g035930 Solanum pennellii
Sp1g06240 Schrenkiella parvula
Sp4g11900 Schrenkiella parvula
TAR369G0431 Trochodendron aralioides
THA.LOC104800676 Tarenaya hassleriana
THA.LOC104815783 Tarenaya hassleriana
Thecc.05G037300 Theobroma cacao
Thecc.09G318500 Theobroma cacao
Thhalv10006814m.g Eutrema salsugineum
Thhalv10016261m.g Eutrema salsugineum
TPR.G1425 Trifolium pratense
TPR.G23594 Trifolium pratense
TWI31G1224 Tripterygium wilfordii
TWI74G0890 Tripterygium wilfordii
TWI79G0215 Tripterygium wilfordii
unitig_0.g228 Utricularia gibba
unitig_60.g25693 Utricularia gibba
vmacro03045 Vaccinium macrocarpon
vmacro08645 Vaccinium macrocarpon
vmacro14548 Vaccinium macrocarpon
vmacro14549 Vaccinium macrocarpon
vmacro14550 Vaccinium macrocarpon
VMungo1127G1097 Vigna mungo
VMungo1127G1333 Vigna mungo
Zm00001eb351270 Zea mays

User provided reference genes

Program Settings