Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p02810 Brassica napus
A09p50810 Brassica napus
Aa31LG10G12700 Aethionema arabicum
Aa31LG1G24080 Aethionema arabicum
Aa31sc18G200 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3158 Anthoceros agrestis
Actinidia09228 Actinidia chinensis
Actinidia14826 Actinidia chinensis
Actinidia22029 Actinidia chinensis
Actinidia31702 Actinidia chinensis
Actinidia40434 Actinidia chinensis
Ah.04g152420 Amaranthus hybridus
Ah.07g200200 Amaranthus hybridus
AL5G39640 Arabidopsis lyrata
Aqoxy2G00083 Aquilegia oxysepala
Aqoxy3G02473 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.VQ0QE9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YYB4W1 Arachis hypogaea
AT3G57990 Arabidopsis thaliana
ATR0049G071 Amborella trichopoda
ATR0605G156 Amborella trichopoda
ATR0697G250 Amborella trichopoda
ATR0705G004 Amborella trichopoda
ATR1125G055 Amborella trichopoda
Atru.chr6.1762 Acer truncatum
Atru.chr8.1087 Acer truncatum
AUR62007262 Chenopodium quinoa
AUR62012042 Chenopodium quinoa
AUR62018736 Chenopodium quinoa
AUR62024309 Chenopodium quinoa
AUR62024310 Chenopodium quinoa
BcaB02g08284 Brassica carinata
BcaC02g09976 Brassica carinata
BcaC02g09979 Brassica carinata
BcaC07g40169 Brassica carinata
BcaNung05751 Brassica carinata
BolC4t25002H Brassica oleracea
BolC8t50951H Brassica oleracea
BraA04t16005Z Brassica rapa
BraA09t40528Z Brassica rapa
C04p34400 Brassica napus
C08p33560 Brassica napus
CAN.G128.37 Capsicum annuum
CAN.G201.13 Capsicum annuum
CANSAT21G1896 Cannabis sativa
CANSAT64G0384 Cannabis sativa
CARHR137210 Cardamine hirsuta
CARHR168310 Cardamine hirsuta
Carub.0004s2449 Capsella rubella
Carub.0005s2483 Capsella rubella
Ca_24638_v3 Cicer arietinum L.
Ca_25704_v3 Cicer arietinum L.
CBR_g58399 Chara braunii
Cc06_g16030 Coffea canephora
Cc08_g02320 Coffea canephora
CDE04G3293 Ceratophyllum demersum
CDE07G1195 Ceratophyllum demersum
Cfa012399 Carpinus fangiana
Cfa020178 Carpinus fangiana
Ciclev10003586m.g Citrus clementina
Ciclev10003666m.g Citrus clementina
Ciclev10012101m.g Citrus clementina
Ciclev10024459m.g Citrus clementina
Ciclev10031629m.g Citrus clementina
CiPaw.09G031000 Carya illinoinensis
CiPaw.11G089800 Carya illinoinensis
CiPaw.12G061300 Carya illinoinensis
ClCG04G002270 Citrullus lanatus
ClCG10G012630 Citrullus lanatus
COL.COLO4_17095 Corchorus olitorius
COL.COLO4_27456 Corchorus olitorius
COL.COLO4_35475 Corchorus olitorius
Cpa.g.sc6.422 Carica papaya
Cpa.g.sc85.75 Carica papaya
CsaV3_3G001990 Cucumis sativus L.
CsaV3_3G032440 Cucumis sativus L.
CsaV3_4G030390 Cucumis sativus L.
CSS0014167 Camellia sinensis var. sinensis
CSS0031146 Camellia sinensis var. sinensis
CSS0043452 Camellia sinensis var. sinensis
DCAR_019842 Daucus carota
DCAR_031778 Daucus carota
Dinv14286 Davidia involucrata
Dinv24084 Davidia involucrata
Dinv25193 Davidia involucrata
Dinv43930 Davidia involucrata
Duzib093G1712 Durio zibethinus
Duzib106G0036 Durio zibethinus
Duzib205G1594 Durio zibethinus
ECA232G4950 Erigeron canadensis
ECA248G1415 Erigeron canadensis
EL10Ac3g06927 Beta vulgaris
EL10Ac5g12150 Beta vulgaris
Eucgr.A02447 Eucalyptus grandis
Eucgr.D02165 Eucalyptus grandis
FAN02G0218 Fragaria x ananassa
FAN05G0251 Fragaria x ananassa
FAN05G0768 Fragaria x ananassa
FAN08G2852 Fragaria x ananassa
FAN09G4377 Fragaria x ananassa
FAN13G2849 Fragaria x ananassa
FAN14G2855 Fragaria x ananassa
FAN18G2301 Fragaria x ananassa
FvH4_5g21440 Fragaria vesca
FvH4_6g22460 Fragaria vesca
Glyma.01G200300 Glycine max
Glyma.02G174300 Glycine max
Glyma.09G112400 Glycine max
Glyma.11G041800 Glycine max
Gohir.A04G048700 Gossypium hirsutum
Gohir.A08G158900 Gossypium hirsutum
Gohir.A09G088000 Gossypium hirsutum
Gohir.D04G098300 Gossypium hirsutum
Gohir.D08G179300 Gossypium hirsutum
Gohir.D09G087800 Gossypium hirsutum
Gorai.004G187800 Gossypium raimondii
Gorai.006G066800 Gossypium raimondii
Gorai.006G104300 Gossypium raimondii
GSVIVG01013169001 Vitis vinifera
GSVIVG01033512001 Vitis vinifera
HanXRQChr06g0167271 Helianthus annuus
HanXRQChr13g0390301 Helianthus annuus
HanXRQChr15g0463901 Helianthus annuus
Haze_08280 Corylus avellana
Haze_08285 Corylus avellana
Haze_19976 Corylus avellana
Hma1.2p1_0183F.1_g080830 Hydrangea macrophylla
HPP92_019677 Vanilla planifolia
Lalb_Chr05g0217951 Lupinus albus
Lalb_Chr09g0323901 Lupinus albus
Lalb_Chr09g0326991 Lupinus albus
Lalb_Chr16g0383041 Lupinus albus
Lj2g0020542 Lotus japonicus
Lj5g0001504 Lotus japonicus
Lj8P290T52 Lonicera japonica
Lsat_1_v5_gn_3_16220 Lactuca sativa
Lsat_1_v5_gn_5_163040 Lactuca sativa
Lsat_1_v5_gn_5_163060 Lactuca sativa
Manes.04G138500 Manihot esculenta
Manes.11G028000 Manihot esculenta
Manes.15G170400 Manihot esculenta
Mapoly0061s0112 Marchantia polymorpha
MBI01_g01348_MAGBIO Magnolia biondii
MD06G1029200 Malus domestica
MD12G1059200 Malus domestica
MD14G1058800 Malus domestica
Medtr1g053910 Medicago truncatula
Medtr5g014110 Medicago truncatula
MELO3C008898.2 Cucumis melo
MELO3C013870.2 Cucumis melo
MELO3C023944.2 Cucumis melo
Migut.E01648 Erythranthe guttata
Migut.K00039 Erythranthe guttata
MSTRG.10840 Avicennia marina
MSTRG.1975 Avicennia marina
MSTRG.26086 Avicennia marina
Nitab4.5_0000892g0130 Nicotiana tabacum
Nitab4.5_0003100g0050 Nicotiana tabacum
Nitab4.5_0003600g0050 Nicotiana tabacum
Nitab4.5_0004658g0030 Nicotiana tabacum
Nitab4.5_0004991g0010 Nicotiana tabacum
Nn2g15654 Nelumbo nucifera
Nn6g33644 Nelumbo nucifera
Nn7g36020 Nelumbo nucifera
Oeu006002.1 Olea europaea
Oeu007769.1 Olea europaea
Oeu029226.1 Olea europaea
Os08g0510800 Oryza sativa ssp. japonica
Os09g0278700 Oryza sativa ssp. japonica
Os09g0491676 Oryza sativa ssp. japonica
Peaxi162Scf00480g00002 Petunia axillaris
PGR004G1986 Punica granatum
PGR031G1823 Punica granatum
PGSC0003DMG400006313 Solanum tuberosum
PGSC0003DMG400023673 Solanum tuberosum
PGSC0003DMG400026598 Solanum tuberosum
Phvul.002G005500 Phaseolus vulgaris
Phvul.007G259100 Phaseolus vulgaris
Potri.001G145400 Populus trichocarpa
Potri.003G088500 Populus trichocarpa
Potri.006G191800 Populus trichocarpa
Potri.016G046900 Populus trichocarpa
Pp3c26_2720 Physcomitrium patens
Pp3c4_23000 Physcomitrium patens
Prupe.5G042700 Prunus persica
Prupe.7G076000 Prunus persica
Psat2g173760 Pisum sativum
Psat4g106520 Pisum sativum
Psat4g106560 Pisum sativum
Psat6g129520 Pisum sativum
PSO541G0690 Papaver somniferum
PSO675G2471 Papaver somniferum
QL07p023492 Quercus lobata
QL12p006742 Quercus lobata
QL12p006747 Quercus lobata
RcHm_v2.0_Chr3g0479871 Rosa chinensis
RcHm_v2.0_Chr7g0208871 Rosa chinensis
Rhsim03G0007100 Rhododendron simsii
Rhsim03G0007200 Rhododendron simsii
Rhsim07G0123700 Rhododendron simsii
Sabra01G0114000 Salix brachista
Sabra03G0058500 Salix brachista
Sabra06G0146800 Salix brachista
Sabra16G0050800 Salix brachista
SalBow1G7211 Salvia bowleyana
SalBow6G5077 Salvia bowleyana
Sc07g0008860 Simmondsia chinensis
Sc25g0005080 Simmondsia chinensis
Sed0000795 Sechium edule
Sed0007655 Sechium edule
SEGI_35073 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09224 Striga asiatica
SGA_v2.0_scaffold274G46479 Striga asiatica
SGA_v2.0_scaffold94G28399 Striga asiatica
SGA_v2.0_scaffold94G28421 Striga asiatica
SMO134G0195 Selaginella moellendorffii
Solyc06g061050.4 Solanum lycopersicum
Solyc10g080470.1 Solanum lycopersicum
Sopen06g021260 Solanum pennellii
Sopen10g031010 Solanum pennellii
Sp5g04730 Schrenkiella parvula
TAR369G0455 Trochodendron aralioides
TAR623G0275 Trochodendron aralioides
TAR636G2618 Trochodendron aralioides
THA.LOC104802510 Tarenaya hassleriana
THA.LOC104824470 Tarenaya hassleriana
Thecc.03G232700 Theobroma cacao
Thecc.05G170400 Theobroma cacao
Thhalv10006049m.g Eutrema salsugineum
TPR.G17612 Trifolium pratense
TPR.G27532 Trifolium pratense
TWI60G0122 Tripterygium wilfordii
TWI74G1238 Tripterygium wilfordii
TWI81G0281 Tripterygium wilfordii
unitig_26.g8903 Utricularia gibba
unitig_744.g24312 Utricularia gibba
vmacro07924 Vaccinium macrocarpon
VMungo0720G2237 Vigna mungo
VMungo1215G0410 Vigna mungo
Zm00001eb101950 Zea mays
Zm00001eb150690 Zea mays
Zm00001eb316810 Zea mays
Zm00001eb382110 Zea mays

User provided reference genes

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