Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p20210 Brassica napus
A06p03130 Brassica napus
A08p03160 Brassica napus
Aa31LG10G3880 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.225 Anthoceros agrestis
Actinidia06271 Actinidia chinensis
Actinidia19442 Actinidia chinensis
Ah.06g194390 Amaranthus hybridus
AL1G58060 Arabidopsis lyrata
Aqoxy2G00294 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8QQ5RZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EWB98H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M26H9J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S6XBKD Arachis hypogaea
AT1G50420 Arabidopsis thaliana
ATR0721G086 Amborella trichopoda
Atru.chr11.2470 Acer truncatum
Atru.chr11.2499 Acer truncatum
AUR62000171 Chenopodium quinoa
AUR62039840 Chenopodium quinoa
BcaB02g11143 Brassica carinata
BcaB04g17251 Brassica carinata
BcaC01g01229 Brassica carinata
BcaC05g27436 Brassica carinata
BolC3t21279H Brassica oleracea
BolC5t32122H Brassica oleracea
BolC5t32123H Brassica oleracea
BolC6t35670H Brassica oleracea
BraA06t23526Z Brassica rapa
BraA08t32348Z Brassica rapa
C03p89620 Brassica napus
C05p33880 Brassica napus
C06p05630 Brassica napus
CAN.G379.21 Capsicum annuum
CAN.G484.4 Capsicum annuum
CANSAT80G0237 Cannabis sativa
CARHR040430 Cardamine hirsuta
Carub.0001s3949 Capsella rubella
Ca_11245_v3 Cicer arietinum L.
Ca_27722_v3 Cicer arietinum L.
Cc01_g05900 Coffea canephora
Cc02_g29570 Coffea canephora
CDE08G0458 Ceratophyllum demersum
CDE08G0552 Ceratophyllum demersum
Cfa009831 Carpinus fangiana
Cfa010858 Carpinus fangiana
Ciclev10015219m.g Citrus clementina
Ciclev10031389m.g Citrus clementina
CiPaw.13G010500 Carya illinoinensis
CiPaw.13G153100 Carya illinoinensis
CiPaw.14G005700 Carya illinoinensis
CiPaw.14G115700 Carya illinoinensis
ClCG03G012930 Citrullus lanatus
ClCG05G020800 Citrullus lanatus
COL.COLO4_04117 Corchorus olitorius
COL.COLO4_25835 Corchorus olitorius
Cpa.g.sc197.7 Carica papaya
Cpa.g.sc84.12 Carica papaya
CsaV3_1G043110 Cucumis sativus L.
CsaV3_5G036490 Cucumis sativus L.
CSS0034247 Camellia sinensis var. sinensis
CSS0040667 Camellia sinensis var. sinensis
CSS0041064 Camellia sinensis var. sinensis
DCAR_003235 Daucus carota
DCAR_003241 Daucus carota
DCAR_029974 Daucus carota
Dinv31497 Davidia involucrata
Dinv32054 Davidia involucrata
Dinv36201 Davidia involucrata
Duzib106G0362 Durio zibethinus
Duzib114G0070 Durio zibethinus
Duzib128G1798 Durio zibethinus
Duzib168G1685 Durio zibethinus
Duzib170G0374 Durio zibethinus
Duzib170G1105 Durio zibethinus
ECA238G4021 Erigeron canadensis
ECA248G0728 Erigeron canadensis
EL10Ac4g10176 Beta vulgaris
Eucgr.B03716 Eucalyptus grandis
Eucgr.G03258 Eucalyptus grandis
FAN01G0247 Fragaria x ananassa
FAN03G0102 Fragaria x ananassa
FAN06G3196 Fragaria x ananassa
FAN10G4358 Fragaria x ananassa
FvH4_7g02290 Fragaria vesca
Glyma.01G226600 Glycine max
Glyma.04G138900 Glycine max
Glyma.11G016100 Glycine max
Glyma.11G096000 Glycine max
Glyma.11G150200 Glycine max
Glyma.12G022100 Glycine max
Gohir.A05G333000 Gossypium hirsutum
Gohir.A09G111400 Gossypium hirsutum
Gohir.A13G012900 Gossypium hirsutum
Gohir.A13G217801 Gossypium hirsutum
Gohir.D04G071500 Gossypium hirsutum
Gohir.D09G108000 Gossypium hirsutum
Gohir.D13G014100 Gossypium hirsutum
Gohir.D13G221400 Gossypium hirsutum
Gorai.006G125700 Gossypium raimondii
Gorai.012G080500 Gossypium raimondii
Gorai.013G015100 Gossypium raimondii
Gorai.013G252600 Gossypium raimondii
GSVIVG01000847001 Vitis vinifera
GSVIVG01022613001 Vitis vinifera
GSVIVG01037375001 Vitis vinifera
HanXRQChr06g0183201 Helianthus annuus
HanXRQChr13g0393961 Helianthus annuus
HanXRQChr13g0393971 Helianthus annuus
HanXRQChr14g0433011 Helianthus annuus
Haze_03093 Corylus avellana
Haze_23194 Corylus avellana
Hma1.2p1_0910F.1_g235850 Hydrangea macrophylla
HPP92_012110 Vanilla planifolia
HPP92_025005 Vanilla planifolia
Hund15711 Selenicereus undatus
Lalb_Chr01g0001151 Lupinus albus
Lalb_Chr09g0320591 Lupinus albus
Lalb_Chr16g0376861 Lupinus albus
Lj1P304T14 Lonicera japonica
Lj3g0014058 Lotus japonicus
Lj3g0027275 Lotus japonicus
Lj7P579T22 Lonicera japonica
Lj9P645T39 Lonicera japonica
LjContig00222g0017145 Lotus japonicus
Lsat_1_v5_gn_1_97941 Lactuca sativa
Lsat_1_v5_gn_2_28900 Lactuca sativa
Lsat_1_v5_gn_6_71221 Lactuca sativa
Manes.01G182400 Manihot esculenta
Manes.02G142500 Manihot esculenta
Manes.04G164200 Manihot esculenta
Manes.11G002500 Manihot esculenta
MBI13_g03360_MAGBIO Magnolia biondii
MBI13_g41709_MAGBIO Magnolia biondii
MD02G1295800 Malus domestica
MD03G1169300 Malus domestica
MD03G1169400 Malus domestica
MD07G1030000 Malus domestica
MD11G1196300 Malus domestica
Medtr3g022005 Medicago truncatula
Medtr3g022580 Medicago truncatula
Medtr3g022830 Medicago truncatula
Medtr3g025340 Medicago truncatula
Medtr3g025350 Medicago truncatula
Medtr4g076140 Medicago truncatula
Medtr5g009080 Medicago truncatula
MELO3C012447.2 Cucumis melo
MELO3C015155.2 Cucumis melo
Migut.D00643 Erythranthe guttata
Migut.N02362 Erythranthe guttata
MSTRG.12449 Avicennia marina
MSTRG.18526 Avicennia marina
MSTRG.21356 Avicennia marina
Nitab4.5_0000718g0090 Nicotiana tabacum
Nitab4.5_0001290g0160 Nicotiana tabacum
Nitab4.5_0004725g0010 Nicotiana tabacum
Nitab4.5_0014315g0010 Nicotiana tabacum
Nn2g14954 Nelumbo nucifera
Nn7g36486 Nelumbo nucifera
Oeu001489.1 Olea europaea
Oeu016688.1 Olea europaea
Oeu025895.1 Olea europaea
Oeu027116.1 Olea europaea
Os01g0948200 Oryza sativa ssp. japonica
Os06g0211500 Oryza sativa ssp. japonica
Os11g0500050 Oryza sativa ssp. japonica
Peaxi162Scf00050g00101 Petunia axillaris
Peaxi162Scf00062g00073 Petunia axillaris
Peaxi162Scf00071g00098 Petunia axillaris
PGR031G3006 Punica granatum
PGR119G2492 Punica granatum
PGSC0003DMG400004649 Solanum tuberosum
PGSC0003DMG400022709 Solanum tuberosum
Phvul.002G165500 Phaseolus vulgaris
Phvul.005G032900 Phaseolus vulgaris
Phvul.011G024100 Phaseolus vulgaris
Potri.001G023500 Populus trichocarpa
Potri.003G202100 Populus trichocarpa
Potri.009G048700 Populus trichocarpa
Pp3c11_18190 Physcomitrium patens
Pp3c7_940 Physcomitrium patens
Prupe.2G028700 Prunus persica
Prupe.4G258200 Prunus persica
Psat2g185440 Pisum sativum
Psat5g213720 Pisum sativum
Psat7g179920 Pisum sativum
PSO339G0676 Papaver somniferum
PSO384G2579 Papaver somniferum
QL01p017838 Quercus lobata
QL04p012508 Quercus lobata
QL04p012529 Quercus lobata
QL04p012537 Quercus lobata
QL04p012542 Quercus lobata
QL04p013628 Quercus lobata
QL04p013636 Quercus lobata
QL04p013645 Quercus lobata
QL05p029029 Quercus lobata
RcHm_v2.0_Chr1g0319641 Rosa chinensis
RcHm_v2.0_Chr5g0050921 Rosa chinensis
Rhsim07G0062300 Rhododendron simsii
Rhsim13G0216700 Rhododendron simsii
Sabra01G0017800 Salix brachista
Sabra03G0149400 Salix brachista
Sabra09G0035100 Salix brachista
SalBow6G6122 Salvia bowleyana
Sc14g0005790 Simmondsia chinensis
Sed0010883 Sechium edule
Sed0014173 Sechium edule
Sed0024948 Sechium edule
SEGI_25978 Sequoiadendron giganteum
SEGI_30579 Sequoiadendron giganteum
SGA_v2.0_scaffold29G12278 Striga asiatica
SGA_v2.0_scaffold354G49744 Striga asiatica
SMO137G0168 Selaginella moellendorffii
Solyc01g008910.2 Solanum lycopersicum
Solyc12g099900.1 Solanum lycopersicum
Sopen01g004400 Solanum pennellii
Sopen12g034520 Solanum pennellii
Sp1g37250 Schrenkiella parvula
TAR045G0001 Trochodendron aralioides
TAR369G0600 Trochodendron aralioides
TAR633G0749 Trochodendron aralioides
THA.LOC104826488 Tarenaya hassleriana
Thecc.09G243200 Theobroma cacao
Thecc.10G005700 Theobroma cacao
Thhalv10011447m.g Eutrema salsugineum
TPR.G18799 Trifolium pratense
TPR.G18812 Trifolium pratense
TPR.G22563 Trifolium pratense
TPR.G29532 Trifolium pratense
TPR.G31990 Trifolium pratense
TPR.G36033 Trifolium pratense
TPR.G37966 Trifolium pratense
TWI15G0576 Tripterygium wilfordii
TWI63G1489 Tripterygium wilfordii
unitig_62.g23896 Utricularia gibba
unitig_62.g23897 Utricularia gibba
unitig_90.g27462 Utricularia gibba
vmacro13725 Vaccinium macrocarpon
VMungo1080G0584 Vigna mungo
VMungo1127G0823 Vigna mungo
VMungo1215G2396 Vigna mungo
Zm00001eb141310 Zea mays
Zm00001eb363140 Zea mays

User provided reference genes

Program Settings