Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p00030 Brassica napus
A05p18370 Brassica napus
A08p01600 Brassica napus
A08p01620 Brassica napus
Aa31LG10G1790 Aethionema arabicum
Aa31LG3G17470 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2467 Anthoceros agrestis
Actinidia18878 Actinidia chinensis
Actinidia28017 Actinidia chinensis
Actinidia28019 Actinidia chinensis
Actinidia29274 Actinidia chinensis
Ah.01g024130 Amaranthus hybridus
Ah.05g175110 Amaranthus hybridus
AL1G61830 Arabidopsis lyrata
AL6G19990 Arabidopsis lyrata
AL6G45630 Arabidopsis lyrata
AL6G45640 Arabidopsis lyrata
Aqoxy3G04117 Aquilegia oxysepala
Aqoxy6G00650 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.305BSH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JKRU9X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V6QG6Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X2M6R4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZQH5MP Arachis hypogaea
AT1G53345 Arabidopsis thaliana
AT5G09580 Arabidopsis thaliana
ATR0807G174 Amborella trichopoda
Atru.BG.196.p Acer truncatum
Atru.chr6.1339 Acer truncatum
Atru.chr6.1395 Acer truncatum
AUR62004230 Chenopodium quinoa
AUR62013618 Chenopodium quinoa
AUR62027087 Chenopodium quinoa
AUR62030927 Chenopodium quinoa
BcaB02g10949 Brassica carinata
BcaB04g17083 Brassica carinata
BcaB04g17086 Brassica carinata
BcaB05g21545 Brassica carinata
BcaC01g01384 Brassica carinata
BcaC01g01385 Brassica carinata
BcaC03g13263 Brassica carinata
BolC2t06356H Brassica oleracea
BolC3t21463H Brassica oleracea
BraA02t04986Z Brassica rapa
BraA05t20727Z Brassica rapa
BraA08t32213Z Brassica rapa
BraA08t32215Z Brassica rapa
C02p03930 Brassica napus
C03p91450 Brassica napus
CAN.G504.39 Capsicum annuum
CAN.G637.18 Capsicum annuum
CANSAT01G0744 Cannabis sativa
CANSAT54G2703 Cannabis sativa
CARHR043570 Cardamine hirsuta
CARHR203810 Cardamine hirsuta
Carub.0001s4252 Capsella rubella
Carub.0003s2766 Capsella rubella
Ca_18410_v3 Cicer arietinum L.
Ca_18567_v3 Cicer arietinum L.
Cc02_g20640 Coffea canephora
Cc02_g20650 Coffea canephora
Cc03_g14400 Coffea canephora
Cc04_g08920 Coffea canephora
CDE04G0567 Ceratophyllum demersum
CDE05G2206 Ceratophyllum demersum
CDE06G1140 Ceratophyllum demersum
Cfa020691 Carpinus fangiana
Ciclev10021011m.g Citrus clementina
Ciclev10029816m.g Citrus clementina
CiPaw.05G027300 Carya illinoinensis
CiPaw.16G101300 Carya illinoinensis
ClCG04G012490 Citrullus lanatus
ClCG09G016500 Citrullus lanatus
Cpa.g.sc1376.1 Carica papaya
Cpa.g.sc21.59 Carica papaya
CsaV3_1G005210 Cucumis sativus L.
CsaV3_7G007440 Cucumis sativus L.
CSS0000609 Camellia sinensis var. sinensis
CSS0003377 Camellia sinensis var. sinensis
CSS0006440 Camellia sinensis var. sinensis
CSS0023717 Camellia sinensis var. sinensis
CSS0028145 Camellia sinensis var. sinensis
CSS0037026 Camellia sinensis var. sinensis
DCAR_001841 Daucus carota
DCAR_010212 Daucus carota
Dinv08972 Davidia involucrata
Dinv30988 Davidia involucrata
Duzib132G0158 Durio zibethinus
ECA234G0873 Erigeron canadensis
EL10Ac1g00940 Beta vulgaris
EL10Ac9g22119 Beta vulgaris
Eucgr.H00613 Eucalyptus grandis
Eucgr.I02590 Eucalyptus grandis
Eucgr.I02591 Eucalyptus grandis
FAN04G0651 Fragaria x ananassa
FAN08G1509 Fragaria x ananassa
FAN13G0967 Fragaria x ananassa
FAN18G3210 Fragaria x ananassa
FAN19G2857 Fragaria x ananassa
FAN23G1321 Fragaria x ananassa
FAN26G3199 Fragaria x ananassa
FAN28G0139 Fragaria x ananassa
FvH4_1g23320 Fragaria vesca
FvH4_5g18120 Fragaria vesca
Glyma.07G184100 Glycine max
Glyma.08G065200 Glycine max
Glyma.09G167500 Glycine max
Glyma.16G217500 Glycine max
Gohir.A13G049800 Gossypium hirsutum
Gohir.D13G048300 Gossypium hirsutum
Gorai.013G053900 Gossypium raimondii
GSVIVG01007853001 Vitis vinifera
GSVIVG01029393001 Vitis vinifera
GSVIVG01038511001 Vitis vinifera
HanXRQChr10g0291201 Helianthus annuus
HanXRQChr14g0428031 Helianthus annuus
Haze_10436 Corylus avellana
Haze_18994 Corylus avellana
Hund00392 Selenicereus undatus
Lalb_Chr16g0383061 Lupinus albus
Lalb_Chr24g0398461 Lupinus albus
Lj2g0022789 Lotus japonicus
Lj4g0007428 Lotus japonicus
Lj4g0024024 Lotus japonicus
Lj5A226G56 Lonicera japonica
Lj5A226G57 Lonicera japonica
Lj5C165G25 Lonicera japonica
LjContig00139g0003532 Lotus japonicus
LjContig00139g0010456 Lotus japonicus
LjContig00139g0015911 Lotus japonicus
Lsat_1_v5_gn_2_5161 Lactuca sativa
Lsat_1_v5_gn_5_111001 Lactuca sativa
Manes.02G220100 Manihot esculenta
Manes.10G093500 Manihot esculenta
Mapoly0044s0070 Marchantia polymorpha
MBI08_g09789_MAGBIO Magnolia biondii
MBI16_g10443_MAGBIO Magnolia biondii
MD06G1236700 Malus domestica
MD10G1056400 Malus domestica
MD14G1243500 Malus domestica
MD14G1243600 Malus domestica
Medtr1g053780 Medicago truncatula
Medtr1g054100 Medicago truncatula
Medtr4g092970 Medicago truncatula
Medtr6g477880 Medicago truncatula
MELO3C001960.2 Cucumis melo
MELO3C018558.2 Cucumis melo
Migut.B00526 Erythranthe guttata
Migut.O00244 Erythranthe guttata
MSTRG.16630 Avicennia marina
MSTRG.23204 Avicennia marina
Nitab4.5_0000935g0210 Nicotiana tabacum
Nitab4.5_0001180g0020 Nicotiana tabacum
Nitab4.5_0005163g0040 Nicotiana tabacum
Nitab4.5_0005200g0050 Nicotiana tabacum
Nn2g15300 Nelumbo nucifera
Nn3g18508 Nelumbo nucifera
Oeu013927.4 Olea europaea
Oeu033798.3 Olea europaea
Os02g0684600 Oryza sativa ssp. japonica
Os11g0167200 Oryza sativa ssp. japonica
Peaxi162Scf00016g03459 Petunia axillaris
Peaxi162Scf00171g00065 Petunia axillaris
PGR083G2063 Punica granatum
PGR142G0966 Punica granatum
PGR142G3779 Punica granatum
PGSC0003DMG400010678 Solanum tuberosum
PGSC0003DMG400031039 Solanum tuberosum
Phvul.002G215600 Phaseolus vulgaris
Phvul.004G143000 Phaseolus vulgaris
Phvul.004G143200 Phaseolus vulgaris
Potri.001G285000 Populus trichocarpa
Potri.015G030300 Populus trichocarpa
Pp3c4_5290 Physcomitrium patens
Prupe.5G241200 Prunus persica
Prupe.8G074100 Prunus persica
Psat1g031520 Pisum sativum
Psat7g103160 Pisum sativum
PSO063G3843 Papaver somniferum
PSO339G2269 Papaver somniferum
PSO339G4496 Papaver somniferum
PSO782G0438 Papaver somniferum
PSO801G0587 Papaver somniferum
QL10p032039 Quercus lobata
QL10p032155 Quercus lobata
QL10p032161 Quercus lobata
QL11p026419 Quercus lobata
RcHm_v2.0_Chr2g0118131 Rosa chinensis
RcHm_v2.0_Chr2g0118141 Rosa chinensis
RcHm_v2.0_Chr2g0118161 Rosa chinensis
RcHm_v2.0_Chr7g0177491 Rosa chinensis
Rhsim05G0096700 Rhododendron simsii
Rhsim05G0097100 Rhododendron simsii
Rhsim05G0097300 Rhododendron simsii
Sabra15G0025300 Salix brachista
Sabra16G0177700 Salix brachista
SalBow5G1094 Salvia bowleyana
SalBow5G2867 Salvia bowleyana
SalBow5G3512 Salvia bowleyana
SalBow6G5254 Salvia bowleyana
Sc08g0004090 Simmondsia chinensis
Sc11g0007040 Simmondsia chinensis
Sed0002549 Sechium edule
Sed0024829 Sechium edule
SEGI_04647 Sequoiadendron giganteum
SEGI_22169 Sequoiadendron giganteum
SEGI_35693 Sequoiadendron giganteum
SGA_v2.0_scaffold32G12940 Striga asiatica
SGA_v2.0_scaffold90G27771 Striga asiatica
SHI21328 Sapria himalayana
SHI53683 Sapria himalayana
SMO352G0025 Selaginella moellendorffii
Solyc01g106190.4 Solanum lycopersicum
Solyc03g098180.3 Solanum lycopersicum
Sopen01g048580 Solanum pennellii
Sopen03g028880 Solanum pennellii
Sp1g39920 Schrenkiella parvula
Sp6g33790 Schrenkiella parvula
TAR376G0119 Trochodendron aralioides
TAR376G1183 Trochodendron aralioides
TAR629G1083 Trochodendron aralioides
THA.LOC104810434 Tarenaya hassleriana
Thecc.02G125700 Theobroma cacao
Thhalv10011996m.g Eutrema salsugineum
Thhalv10013860m.g Eutrema salsugineum
TPR.G16912 Trifolium pratense
TPR.G20923 Trifolium pratense
TPR.G24091 Trifolium pratense
TPR.G36451 Trifolium pratense
TPR.G39308 Trifolium pratense
TWI23G0822 Tripterygium wilfordii
TWI81G0128 Tripterygium wilfordii
unitig_0.g1399 Utricularia gibba
unitig_0.g790 Utricularia gibba
vmacro19599 Vaccinium macrocarpon
VMungo0251G0167 Vigna mungo
VMungo0464G0886 Vigna mungo
Zm00001eb108150 Zea mays
Zm00001eb166050 Zea mays
Zm00001eb202470 Zea mays
Zm00001eb248430 Zea mays
Zm00001eb250270 Zea mays
Zm00001eb250910 Zea mays
Zm00001eb292560 Zea mays

User provided reference genes

Program Settings