Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p35350 Brassica napus
A03p41110 Brassica napus
A05p12110 Brassica napus
A06p12160 Brassica napus
A06p12170 Brassica napus
Aa31LG10G17050 Aethionema arabicum
Aa31LG7G770 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2886 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4698 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5202 Anthoceros agrestis
Actinidia00780 Actinidia chinensis
Actinidia24553 Actinidia chinensis
Actinidia24909 Actinidia chinensis
Ah.02g110860 Amaranthus hybridus
Ah.11g050460 Amaranthus hybridus
AL1G28370 Arabidopsis lyrata
AL5G46070 Arabidopsis lyrata
Aqoxy2G03420 Aquilegia oxysepala
Aqoxy5G00444 Aquilegia oxysepala
Aqoxy5G02870 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0NU1GV Arachis hypogaea
AT1G16250 Arabidopsis thaliana
AT3G63220 Arabidopsis thaliana
ATR0626G150 Amborella trichopoda
ATR0665G485 Amborella trichopoda
ATR0665G556 Amborella trichopoda
ATR0665G620 Amborella trichopoda
ATR0796G263 Amborella trichopoda
Atru.chr4.3194 Acer truncatum
Atru.chr5.1475 Acer truncatum
AUR62028597 Chenopodium quinoa
AUR62032325 Chenopodium quinoa
BcaB02g06604 Brassica carinata
BcaB04g19031 Brassica carinata
BcaB04g20715 Brassica carinata
BcaC01g03641 Brassica carinata
BcaC02g11428 Brassica carinata
BcaC05g25592 Brassica carinata
BcaC05g28508 Brassica carinata
BcaC09g48880 Brassica carinata
BolC1t04453H Brassica oleracea
BolC3t17312H Brassica oleracea
BolC5t30167H Brassica oleracea
BolC5t33311H Brassica oleracea
BolC8t52002H Brassica oleracea
BraA01t03616Z Brassica rapa
BraA03t13268Z Brassica rapa
BraA05t20155Z Brassica rapa
BraA06t24385Z Brassica rapa
C01p44860 Brassica napus
C03p50200 Brassica napus
C04p15680 Brassica napus
C05p14400 Brassica napus
C05p14410 Brassica napus
C05p45920 Brassica napus
CAN.G1492.12 Capsicum annuum
CAN.G275.1 Capsicum annuum
CAN.G367.4 Capsicum annuum
CANSAT25G3465 Cannabis sativa
CARHR016720 Cardamine hirsuta
CARHR291720 Cardamine hirsuta
Carub.0001s1599 Capsella rubella
Carub.0003s2849 Capsella rubella
Ca_08615_v3 Cicer arietinum L.
Ca_08623_v3 Cicer arietinum L.
CBR_g37301 Chara braunii
Cc01_g19260 Coffea canephora
CDE06G1700 Ceratophyllum demersum
CDE07G1977 Ceratophyllum demersum
Cfa006166 Carpinus fangiana
Ciclev10020951m.g Citrus clementina
CiPaw.01G126800 Carya illinoinensis
CiPaw.07G089600 Carya illinoinensis
ClCG07G000360 Citrullus lanatus
ClCG09G007230 Citrullus lanatus
ClCG09G007240 Citrullus lanatus
COL.COLO4_09064 Corchorus olitorius
COL.COLO4_32975 Corchorus olitorius
Cpa.g.sc2545.2 Carica papaya
CsaV3_6G037180 Cucumis sativus L.
CsaV3_7G027930 Cucumis sativus L.
CsaV3_7G027940 Cucumis sativus L.
CSS0008120 Camellia sinensis var. sinensis
CSS0030773 Camellia sinensis var. sinensis
DCAR_026920 Daucus carota
DCAR_026921 Daucus carota
Dinv32911 Davidia involucrata
Dinv34776 Davidia involucrata
Duzib106G1028 Durio zibethinus
Duzib133G1135 Durio zibethinus
Duzib138G1096 Durio zibethinus
Duzib177G0493 Durio zibethinus
ECA236G4763 Erigeron canadensis
ECA247G0934 Erigeron canadensis
Eucgr.H01462 Eucalyptus grandis
Eucgr.H04146 Eucalyptus grandis
Eucgr.H04148 Eucalyptus grandis
Eucgr.L00800 Eucalyptus grandis
FAN07G0487 Fragaria x ananassa
FAN12G0044 Fragaria x ananassa
FAN12G3400 Fragaria x ananassa
FAN17G1110 Fragaria x ananassa
FAN20G0961 Fragaria x ananassa
FAN24G2523 Fragaria x ananassa
FAN27G2726 Fragaria x ananassa
FvH4_2g23221 Fragaria vesca
FvH4_4g21831 Fragaria vesca
Glyma.02G146000 Glycine max
Glyma.03G156000 Glycine max
Glyma.10G028000 Glycine max
Glyma.19G158300 Glycine max
Gohir.A08G065300 Gossypium hirsutum
Gohir.A11G124300 Gossypium hirsutum
Gohir.A13G165200 Gossypium hirsutum
Gohir.D08G073800 Gossypium hirsutum
Gohir.D11G129500 Gossypium hirsutum
Gohir.D13G168200 Gossypium hirsutum
Gorai.004G078200 Gossypium raimondii
Gorai.007G138500 Gossypium raimondii
Gorai.013G193900 Gossypium raimondii
GSVIVG01001176001 Vitis vinifera
HanXRQChr10g0282411 Helianthus annuus
HanXRQChr15g0466841 Helianthus annuus
Haze_00743 Corylus avellana
Haze_04684 Corylus avellana
Hma1.2p1_0822F.1_g224280 Hydrangea macrophylla
HPP92_017652 Vanilla planifolia
Hund02834 Selenicereus undatus
Hund09505 Selenicereus undatus
Lalb_Chr25g0290201 Lupinus albus
Lj1C49T1 Lonicera japonica
Lj1g0013511 Lotus japonicus
Lj2g0026136 Lotus japonicus
Lj2g0027087 Lotus japonicus
Lj6A705G44 Lonicera japonica
Lsat_1_v5_gn_8_56781 Lactuca sativa
Lsat_1_v5_gn_9_6280 Lactuca sativa
Manes.01G205800 Manihot esculenta
Manes.05G079600 Manihot esculenta
Manes.12G040400 Manihot esculenta
Mapoly0057s0100 Marchantia polymorpha
Mapoly0062s0033 Marchantia polymorpha
Mapoly0096s0062 Marchantia polymorpha
Mapoly0101s0001 Marchantia polymorpha
MD03G1261800 Malus domestica
MD11G1282500 Malus domestica
MD13G1136500 Malus domestica
MD16G1131800 Malus domestica
Medtr7g095220 Medicago truncatula
MELO3C014395.2 Cucumis melo
MELO3C015811.2 Cucumis melo
MELO3C015813.2 Cucumis melo
Migut.D00321 Erythranthe guttata
MSTRG.18249 Avicennia marina
MSTRG.21546 Avicennia marina
Nitab4.5_0000170g0260 Nicotiana tabacum
Nitab4.5_0000252g0020 Nicotiana tabacum
Nitab4.5_0000627g0030 Nicotiana tabacum
Nitab4.5_0000807g0200 Nicotiana tabacum
Nitab4.5_0005696g0010 Nicotiana tabacum
Nitab4.5_0006971g0030 Nicotiana tabacum
Nn1g02365 Nelumbo nucifera
Nn4g25683 Nelumbo nucifera
Nn6g34111 Nelumbo nucifera
Oeu017375.1 Olea europaea
Oeu023611.1 Olea europaea
Oeu023612.1 Olea europaea
Oeu025742.1 Olea europaea
Os10g0388200 Oryza sativa ssp. japonica
Peaxi162Scf01158g00028 Petunia axillaris
Peaxi162Scf01347g00015 Petunia axillaris
Peaxi162Scf01347g00117 Petunia axillaris
PGR004G1039 Punica granatum
PGR119G0242 Punica granatum
PGSC0003DMG400005330 Solanum tuberosum
PGSC0003DMG400019326 Solanum tuberosum
Phvul.001G153400 Phaseolus vulgaris
Potri.002G050600 Populus trichocarpa
Potri.005G211700 Populus trichocarpa
Potri.010G004500 Populus trichocarpa
Pp3c11_19400 Physcomitrium patens
Prupe.1G209000 Prunus persica
Prupe.8G238100 Prunus persica
Psat3g063040 Pisum sativum
Psat4g074760 Pisum sativum
Psat4g074800 Pisum sativum
Psat6g243720 Pisum sativum
PSO170G0139 Papaver somniferum
PSO210G2391 Papaver somniferum
PSO357G0139 Papaver somniferum
PSO761G0265 Papaver somniferum
QL06p014826 Quercus lobata
QL12p021016 Quercus lobata
RcHm_v2.0_Chr4g0428071 Rosa chinensis
RcHm_v2.0_Chr6g0290531 Rosa chinensis
Rhsim13G0026700 Rhododendron simsii
Sabra02G0041300 Salix brachista
Sabra10G0003900 Salix brachista
Sc05g0001450 Simmondsia chinensis
Sc17g0001310 Simmondsia chinensis
Sed0000968 Sechium edule
Sed0008186 Sechium edule
Sed0012001 Sechium edule
Sed0018313 Sechium edule
Sed0021836 Sechium edule
Sed0026373 Sechium edule
Sed0026820 Sechium edule
SEGI_00258 Sequoiadendron giganteum
SEGI_10708 Sequoiadendron giganteum
SEGI_33410 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00503 Striga asiatica
SMO116G0317 Selaginella moellendorffii
SMO118G0450 Selaginella moellendorffii
SMO126G0007 Selaginella moellendorffii
SMO137G0308 Selaginella moellendorffii
SMO252G0019 Selaginella moellendorffii
SMO331G0074 Selaginella moellendorffii
SMO340G0094 Selaginella moellendorffii
SMO353G0062 Selaginella moellendorffii
Solyc06g008690.1 Solanum lycopersicum
Solyc07g042950.1 Solanum lycopersicum
Solyc09g065400.2 Solanum lycopersicum
Sopen06g003470 Solanum pennellii
Sopen07g022540 Solanum pennellii
Sopen09g027170 Solanum pennellii
Sp1g14460 Schrenkiella parvula
Sp3g17330 Schrenkiella parvula
TAR362G0751 Trochodendron aralioides
TAR374G0128 Trochodendron aralioides
TAR633G1597 Trochodendron aralioides
TAR636G3298 Trochodendron aralioides
THA.LOC104812401 Tarenaya hassleriana
THA.LOC104823039 Tarenaya hassleriana
Thecc.01G275200 Theobroma cacao
Thecc.05G247000 Theobroma cacao
Thhalv10007905m.g Eutrema salsugineum
Thhalv10020524m.g Eutrema salsugineum
TPR.G24333 Trifolium pratense
TWI18G0894 Tripterygium wilfordii
TWI75G1272 Tripterygium wilfordii
unitig_749.g13739 Utricularia gibba
vmacro02592 Vaccinium macrocarpon
VMungo1383G1271 Vigna mungo
Zm00001eb224370 Zea mays

User provided reference genes

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