Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p47850 Brassica napus
A09p67900 Brassica napus
A10p02780 Brassica napus
Aa31LG1G20500 Aethionema arabicum
Aa31LG5G3690 Aethionema arabicum
Actinidia04454 Actinidia chinensis
Actinidia08532 Actinidia chinensis
Actinidia12892 Actinidia chinensis
Ah.02g111910 Amaranthus hybridus
Ah.04g156050 Amaranthus hybridus
AL1G13960 Arabidopsis lyrata
AL8G16880 Arabidopsis lyrata
Aqoxy2G03629 Aquilegia oxysepala
Aqoxy5G00252 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.NXY4JS Arachis hypogaea
AT1G04360 Arabidopsis thaliana
AT5G43420 Arabidopsis thaliana
ATR0680G281 Amborella trichopoda
Atru.chr4.2090 Acer truncatum
Atru.chr5.1650 Acer truncatum
AUR62011883 Chenopodium quinoa
AUR62024724 Chenopodium quinoa
BcaC05g24447 Brassica carinata
BcaC06g31700 Brassica carinata
BcaC06g31701 Brassica carinata
BcaC06g34654 Brassica carinata
BcaC07g42170 Brassica carinata
BcaC07g42190 Brassica carinata
BcaNung05655 Brassica carinata
BolC5t29035H Brassica oleracea
BolC7t43132H Brassica oleracea
BolC8t52758H Brassica oleracea
BraA06t27655Z Brassica rapa
BraA09t42123Z Brassica rapa
BraA10t42546Z Brassica rapa
C05p02550 Brassica napus
C07p26020 Brassica napus
C08p52240 Brassica napus
CANSAT01G2008 Cannabis sativa
CANSAT78G0120 Cannabis sativa
CARHR003690 Cardamine hirsuta
CARHR180180 Cardamine hirsuta
Carub.0001s0353 Capsella rubella
Carub.0008s0518 Capsella rubella
Ca_08664_v3 Cicer arietinum L.
Ca_09687_v3 Cicer arietinum L.
Ca_09821_v3 Cicer arietinum L.
Cc01_g18430 Coffea canephora
Cc03_g05390 Coffea canephora
CDE05G1477 Ceratophyllum demersum
Cfa002416 Carpinus fangiana
Cfa008325 Carpinus fangiana
Ciclev10005261m.g Citrus clementina
Ciclev10024118m.g Citrus clementina
CiPaw.01G186600 Carya illinoinensis
CiPaw.02G113700 Carya illinoinensis
CiPaw.03G262700 Carya illinoinensis
CiPaw.04G185900 Carya illinoinensis
ClCG07G000980 Citrullus lanatus
COL.COLO4_05175 Corchorus olitorius
COL.COLO4_15859 Corchorus olitorius
Cpa.g.sc44.76 Carica papaya
Cpa.g.sc50.31 Carica papaya
CsaV3_2G012890 Cucumis sativus L.
CsaV3_3G022510 Cucumis sativus L.
CSS0002216 Camellia sinensis var. sinensis
CSS0023011 Camellia sinensis var. sinensis
CSS0045997 Camellia sinensis var. sinensis
DCAR_018473 Daucus carota
DCAR_024244 Daucus carota
DCAR_027308 Daucus carota
Dinv27041 Davidia involucrata
Dinv34613 Davidia involucrata
Duzib052G1172 Durio zibethinus
Duzib133G0700 Durio zibethinus
Duzib138G0126 Durio zibethinus
Duzib151G0879 Durio zibethinus
Duzib212G0142 Durio zibethinus
ECA236G2528 Erigeron canadensis
EL10Ac3g05027 Beta vulgaris
EL10Ac5g10411 Beta vulgaris
Eucgr.H03092 Eucalyptus grandis
Eucgr.K03267 Eucalyptus grandis
FAN12G2207 Fragaria x ananassa
FAN17G2601 Fragaria x ananassa
FAN22G0260 Fragaria x ananassa
FvH4_4g03440 Fragaria vesca
Glyma.03G162200 Glycine max
Glyma.03G162300 Glycine max
Glyma.10G007200 Glycine max
Glyma.10G036000 Glycine max
Glyma.10G187100 Glycine max
Glyma.13G122400 Glycine max
Glyma.19G163600 Glycine max
Glyma.20G088900 Glycine max
Glyma.20G203400 Glycine max
Gohir.A02G038300 Gossypium hirsutum
Gohir.A04G011132 Gossypium hirsutum
Gohir.A09G226300 Gossypium hirsutum
Gohir.A11G130100 Gossypium hirsutum
Gohir.D02G044400 Gossypium hirsutum
Gohir.D08G201766 Gossypium hirsutum
Gohir.D09G182850 Gossypium hirsutum
Gohir.D09G227184 Gossypium hirsutum
Gohir.D11G135800 Gossypium hirsutum
Gorai.005G049100 Gossypium raimondii
Gorai.006G249700 Gossypium raimondii
Gorai.007G145400 Gossypium raimondii
GSVIVG01027769001 Vitis vinifera
GSVIVG01028306001 Vitis vinifera
HanXRQChr04g0113471 Helianthus annuus
HanXRQChr10g0281041 Helianthus annuus
HanXRQChr15g0468921 Helianthus annuus
Haze_11346 Corylus avellana
Haze_11347 Corylus avellana
Haze_24613 Corylus avellana
Hma1.2p1_0273F.1_g109830 Hydrangea macrophylla
Hma1.2p1_1006F.1_g247060 Hydrangea macrophylla
Hma1.2p1_1716F.1_g299070 Hydrangea macrophylla
HPP92_002415 Vanilla planifolia
HPP92_002432 Vanilla planifolia
HPP92_008418 Vanilla planifolia
HPP92_008429 Vanilla planifolia
HPP92_013001 Vanilla planifolia
HPP92_025975 Vanilla planifolia
Lalb_Chr02g0150521 Lupinus albus
Lalb_Chr02g0152321 Lupinus albus
Lalb_Chr06g0169361 Lupinus albus
Lalb_Chr21g0312331 Lupinus albus
Lj1C65T7 Lonicera japonica
Lj1g0015882 Lotus japonicus
Lj3P802T37 Lonicera japonica
Lj5g0025979 Lotus japonicus
Lj6g0023449 Lotus japonicus
Lj6P662T51 Lonicera japonica
Lsat_1_v5_gn_5_64120 Lactuca sativa
Lsat_1_v5_gn_8_91140 Lactuca sativa
Lsat_1_v5_gn_9_8660 Lactuca sativa
Manes.03G165400 Manihot esculenta
Manes.12G031500 Manihot esculenta
Manes.15G039400 Manihot esculenta
MBI17_g07972_MAGBIO Magnolia biondii
MD05G1199400 Malus domestica
MD10G1185600 Malus domestica
MD13G1212600 Malus domestica
MD16G1216300 Malus domestica
Medtr1g043410 Medicago truncatula
Medtr1g070140 Medicago truncatula
Medtr1g074190 Medicago truncatula
Medtr7g096690 Medicago truncatula
MELO3C006433.2 Cucumis melo
MELO3C012903.2 Cucumis melo
MELO3C022982.2 Cucumis melo
Migut.D00416 Erythranthe guttata
Migut.G00475 Erythranthe guttata
Migut.N00261 Erythranthe guttata
MSTRG.4126 Avicennia marina
MSTRG.9900 Avicennia marina
Nitab4.5_0000086g0100 Nicotiana tabacum
Nitab4.5_0000342g0010 Nicotiana tabacum
Nitab4.5_0000436g0190 Nicotiana tabacum
Nitab4.5_0003897g0010 Nicotiana tabacum
Nn1g02728 Nelumbo nucifera
Nn3g19627 Nelumbo nucifera
Oeu011991.1 Olea europaea
Oeu026366.1 Olea europaea
Oeu063898.1 Olea europaea
Os02g0820200 Oryza sativa ssp. japonica
Os03g0149700 Oryza sativa ssp. japonica
Os03g0149800 Oryza sativa ssp. japonica
Peaxi162Scf00024g00251 Petunia axillaris
Peaxi162Scf00134g00061 Petunia axillaris
Peaxi162Scf00690g00031 Petunia axillaris
PGR004G1410 Punica granatum
PGR044G1957 Punica granatum
PGSC0003DMG400009718 Solanum tuberosum
PGSC0003DMG400016326 Solanum tuberosum
PGSC0003DMG400017179 Solanum tuberosum
PGSC0003DMG400036247 Solanum tuberosum
Phvul.001G160000 Phaseolus vulgaris
Phvul.007G128200 Phaseolus vulgaris
Phvul.007G194100 Phaseolus vulgaris
Phvul.007G272700 Phaseolus vulgaris
Potri.002G039700 Populus trichocarpa
Potri.008G165900 Populus trichocarpa
Potri.010G072700 Populus trichocarpa
Prupe.1G037600 Prunus persica
Prupe.8G225200 Prunus persica
Psat3g058440 Pisum sativum
Psat6g055400 Pisum sativum
Psat6g105440 Pisum sativum
Psat6g128800 Pisum sativum
PSO210G6636 Papaver somniferum
PSO832G4412 Papaver somniferum
QL06p017006 Quercus lobata
QL09p038258 Quercus lobata
RcHm_v2.0_Chr4g0392431 Rosa chinensis
Rhsim04G0184800 Rhododendron simsii
Rhsim07G0130100 Rhododendron simsii
Rhsim13G0034100 Rhododendron simsii
Sabra02G0031900 Salix brachista
Sabra08G0126400 Salix brachista
Sabra10G0035500 Salix brachista
Sc19g0003610 Simmondsia chinensis
Sed0004688 Sechium edule
Sed0007944 Sechium edule
Sed0008755 Sechium edule
Sed0027005 Sechium edule
SGA_v2.0_scaffold1G00604 Striga asiatica
SGA_v2.0_scaffold67G22769 Striga asiatica
SGA_v2.0_scaffold88G27262 Striga asiatica
SHI00668 Sapria himalayana
Solyc03g005490.4 Solanum lycopersicum
Solyc06g053640.1 Solanum lycopersicum
Solyc09g066300.3 Solanum lycopersicum
Solyc09g089890.1 Solanum lycopersicum
Sopen06g018750 Solanum pennellii
Sopen09g028000 Solanum pennellii
Sopen09g032830 Solanum pennellii
Sp1g03170 Schrenkiella parvula
Sp2g08300 Schrenkiella parvula
TAR362G0799 Trochodendron aralioides
TAR633G0578 Trochodendron aralioides
THA.LOC104801087 Tarenaya hassleriana
THA.LOC104826078 Tarenaya hassleriana
Thecc.01G260100 Theobroma cacao
Thecc.04G253300 Theobroma cacao
Thhalv10003389m.g Eutrema salsugineum
Thhalv10009604m.g Eutrema salsugineum
TPR.G15876 Trifolium pratense
TPR.G16287 Trifolium pratense
TPR.G26455 Trifolium pratense
TPR.G3525 Trifolium pratense
TWI09G1647 Tripterygium wilfordii
TWI12G1463 Tripterygium wilfordii
TWI73G0327 Tripterygium wilfordii
unitig_32.g10838 Utricularia gibba
vmacro02654 Vaccinium macrocarpon
vmacro08469 Vaccinium macrocarpon
VMungo0720G0885 Vigna mungo
VMungo0720G2615 Vigna mungo
VMungo0720G2812 Vigna mungo
VMungo1383G1139 Vigna mungo
Zm00001eb038810 Zea mays
Zm00001eb191210 Zea mays

User provided reference genes

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