Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p41810 Brassica napus
A02p35760 Brassica napus
A03p01620 Brassica napus
A10p31850 Brassica napus
Aa31LG3G3050 Aethionema arabicum
Actinidia03695 Actinidia chinensis
Actinidia06732 Actinidia chinensis
Actinidia18545 Actinidia chinensis
Actinidia20430 Actinidia chinensis
Ah.01g003290 Amaranthus hybridus
AL3G21800 Arabidopsis lyrata
AL5G23430 Arabidopsis lyrata
AL6G13940 Arabidopsis lyrata
Aqoxy1G01110 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.579L6H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5R9UV9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.89MG53 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IU3TKS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KXCL7T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NH0M87 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PE2UWG Arachis hypogaea
AT3G10440 Arabidopsis thaliana
AT3G44960 Arabidopsis thaliana
AT5G04320 Arabidopsis thaliana
Atru.chr12.881 Acer truncatum
Atru.chr3.3527 Acer truncatum
AUR62014958 Chenopodium quinoa
AUR62029178 Chenopodium quinoa
BcaB02g10742 Brassica carinata
BcaB04g21203 Brassica carinata
BcaB04g21205 Brassica carinata
BcaC01g02244 Brassica carinata
BcaC09g48090 Brassica carinata
BcaNung05796 Brassica carinata
BolC1t05396H Brassica oleracea
BolC9t59996H Brassica oleracea
BolSC21t60282H Brassica oleracea
BraA01t04253Z Brassica rapa
BraA03t09537Z Brassica rapa
BraA10t45230Z Brassica rapa
C03p54020 Brassica napus
C03p67460 Brassica napus
C09p72570 Brassica napus
CAN.G459.30 Capsicum annuum
CAN.G546.40 Capsicum annuum
CAN.G694.42 Capsicum annuum
CANSAT56G3275 Cannabis sativa
CARHR084940 Cardamine hirsuta
CARHR151010 Cardamine hirsuta
CARHR208960 Cardamine hirsuta
Carub.0003s0965 Capsella rubella
Carub.0005s1069 Capsella rubella
Carub.0006s0327 Capsella rubella
Ca_02470_v3 Cicer arietinum L.
Ca_10435_v3 Cicer arietinum L.
Ca_30123_v3 Cicer arietinum L.
Cc00_g33070 Coffea canephora
Cc01_g10360 Coffea canephora
Cc02_g10720 Coffea canephora
CDE04G0545 Ceratophyllum demersum
Cfa010292 Carpinus fangiana
Ciclev10028947m.g Citrus clementina
CiPaw.01G266600 Carya illinoinensis
CiPaw.02G170900 Carya illinoinensis
CiPaw.13G123400 Carya illinoinensis
ClCG03G002610 Citrullus lanatus
ClCG08G007860 Citrullus lanatus
COL.COLO4_09863 Corchorus olitorius
COL.COLO4_11106 Corchorus olitorius
Cpa.g.sc53.153 Carica papaya
CsaV3_1G013340 Cucumis sativus L.
CsaV3_2G021060 Cucumis sativus L.
CSS0002034 Camellia sinensis var. sinensis
CSS0033737 Camellia sinensis var. sinensis
DCAR_006399 Daucus carota
DCAR_019068 Daucus carota
Dinv16215 Davidia involucrata
Dinv29373 Davidia involucrata
Dinv31245 Davidia involucrata
Dinv36375 Davidia involucrata
Duzib150G0085 Durio zibethinus
Duzib168G1483 Durio zibethinus
Duzib170G0446 Durio zibethinus
ECA232G1997 Erigeron canadensis
ECA233G0311 Erigeron canadensis
EL10Ac9g22611 Beta vulgaris
Eucgr.B03933 Eucalyptus grandis
FAN01G0726 Fragaria x ananassa
FAN03G0996 Fragaria x ananassa
FAN06G0235 Fragaria x ananassa
FAN06G2396 Fragaria x ananassa
FAN07G0150 Fragaria x ananassa
FAN10G1392 Fragaria x ananassa
FAN10G3770 Fragaria x ananassa
FAN11G2794 Fragaria x ananassa
FAN16G2248 Fragaria x ananassa
FAN21G0473 Fragaria x ananassa
FAN25G1769 Fragaria x ananassa
FvH4_3g30760 Fragaria vesca
FvH4_7g18390 Fragaria vesca
Glyma.10G196400 Glycine max
Glyma.11G193300 Glycine max
Glyma.12G080700 Glycine max
Glyma.20G193800 Glycine max
Gohir.A05G107100 Gossypium hirsutum
Gohir.A05G292300 Gossypium hirsutum
Gohir.A06G168700 Gossypium hirsutum
Gohir.D05G107200 Gossypium hirsutum
Gohir.D05G293300 Gossypium hirsutum
Gohir.D06G176308 Gossypium hirsutum
Gorai.009G111300 Gossypium raimondii
Gorai.009G309800 Gossypium raimondii
Gorai.010G207300 Gossypium raimondii
GSVIVG01016210001 Vitis vinifera
GSVIVG01031478001 Vitis vinifera
HanXRQChr08g0218461 Helianthus annuus
HanXRQChr13g0396261 Helianthus annuus
HanXRQChr13g0404481 Helianthus annuus
Haze_16759 Corylus avellana
Haze_23707 Corylus avellana
Haze_23708 Corylus avellana
Hma1.2p1_0117F.1_g056370 Hydrangea macrophylla
Hma1.2p1_0779F.1_g216690 Hydrangea macrophylla
HPP92_004963 Vanilla planifolia
HPP92_008395 Vanilla planifolia
Hund01439 Selenicereus undatus
Hund06759 Selenicereus undatus
Lalb_Chr02g0151001 Lupinus albus
Lalb_Chr06g0169891 Lupinus albus
Lalb_Chr14g0374441 Lupinus albus
Lalb_Chr21g0312871 Lupinus albus
Lj2A1009T38 Lonicera japonica
Lj3g0017780 Lotus japonicus
Lj5g0007739 Lotus japonicus
Lsat_1_v5_gn_6_44580 Lactuca sativa
Lsat_1_v5_gn_8_18641 Lactuca sativa
Lsat_1_v5_gn_9_71621 Lactuca sativa
Manes.04G013601 Manihot esculenta
Manes.07G094800 Manihot esculenta
Manes.11G151800 Manihot esculenta
MBI13_g39327_MAGBIO Magnolia biondii
MD01G1100300 Malus domestica
MD03G1126800 Malus domestica
MD07G1167400 Malus domestica
MD11G1147400 Malus domestica
Medtr1g090657 Medicago truncatula
Medtr4g057530 Medicago truncatula
MELO3C004971.2 Cucumis melo
MELO3C019841.2 Cucumis melo
Migut.F01699 Erythranthe guttata
Migut.F01943 Erythranthe guttata
Migut.N02561 Erythranthe guttata
MSTRG.12339 Avicennia marina
MSTRG.17763 Avicennia marina
MSTRG.8123 Avicennia marina
MSTRG.9139 Avicennia marina
Nitab4.5_0000096g0260 Nicotiana tabacum
Nitab4.5_0000329g0090 Nicotiana tabacum
Nitab4.5_0002285g0050 Nicotiana tabacum
Nitab4.5_0002692g0020 Nicotiana tabacum
Nitab4.5_0003880g0010 Nicotiana tabacum
Nitab4.5_0004987g0050 Nicotiana tabacum
Nn2g13843 Nelumbo nucifera
Nn6g35239 Nelumbo nucifera
Oeu000598.1 Olea europaea
Oeu001525.1 Olea europaea
Oeu007312.2 Olea europaea
Oeu015346.1 Olea europaea
Oeu040984.1 Olea europaea
Oeu046646.1 Olea europaea
Os02g0799100 Oryza sativa ssp. japonica
Os10g0457400 Oryza sativa ssp. japonica
Peaxi162Scf00086g01014 Petunia axillaris
Peaxi162Scf00176g01630 Petunia axillaris
Peaxi162Scf00982g00011 Petunia axillaris
PGR119G0855 Punica granatum
PGR142G3471 Punica granatum
PGSC0003DMG400000414 Solanum tuberosum
PGSC0003DMG401031076 Solanum tuberosum
PGSC0003DMG402031076 Solanum tuberosum
Phvul.007G139000 Phaseolus vulgaris
Phvul.011G085600 Phaseolus vulgaris
Potri.004G216000 Populus trichocarpa
Potri.008G032600 Populus trichocarpa
Potri.009G006100 Populus trichocarpa
Potri.010G229100 Populus trichocarpa
Prupe.2G206000 Prunus persica
Prupe.6G111900 Prunus persica
Psat0s1387g0120 Pisum sativum
Psat6g172200 Pisum sativum
PSO063G2563 Papaver somniferum
PSO339G4755 Papaver somniferum
QL01p015272 Quercus lobata
QL08p053342 Quercus lobata
RcHm_v2.0_Chr1g0362201 Rosa chinensis
RcHm_v2.0_Chr5g0056951 Rosa chinensis
Rhsim09G0146600 Rhododendron simsii
Rhsim11G0027700 Rhododendron simsii
Sabra04G0146600 Salix brachista
Sabra08G0021500 Salix brachista
Sabra09G0003400 Salix brachista
Sabra10G0177700 Salix brachista
SalBow2G3559 Salvia bowleyana
SalBow3G3794 Salvia bowleyana
SalBow4G2846 Salvia bowleyana
SalBow6G2132 Salvia bowleyana
SalBow6G6695 Salvia bowleyana
Sc20g0001570 Simmondsia chinensis
Sed0001530 Sechium edule
Sed0007948 Sechium edule
Sed0011019 Sechium edule
SGA_v2.0_scaffold2G01341 Striga asiatica
SGA_v2.0_scaffold51G18717 Striga asiatica
Solyc11g008090.2 Solanum lycopersicum
Solyc11g066350.2 Solanum lycopersicum
Sopen11g003940 Solanum pennellii
Sopen11g026100 Solanum pennellii
Sp3g08710 Schrenkiella parvula
Sp5g16280 Schrenkiella parvula
Sp6g38420 Schrenkiella parvula
TAR369G0776 Trochodendron aralioides
TAR633G0282 Trochodendron aralioides
TAR636G0158 Trochodendron aralioides
TAR636G2586 Trochodendron aralioides
THA.LOC104810879 Tarenaya hassleriana
THA.LOC104816434 Tarenaya hassleriana
THA.LOC104826901 Tarenaya hassleriana
Thecc.09G350400 Theobroma cacao
Thecc.10G087200 Theobroma cacao
Thhalv10002903m.g Eutrema salsugineum
Thhalv10013000m.g Eutrema salsugineum
Thhalv10020876m.g Eutrema salsugineum
TPR.G36829 Trifolium pratense
TPR.G37751 Trifolium pratense
TWI38G1635 Tripterygium wilfordii
TWI63G0026 Tripterygium wilfordii
TWI75G0416 Tripterygium wilfordii
TWI79G0510 Tripterygium wilfordii
TWI79G0630 Tripterygium wilfordii
unitig_8.g3667 Utricularia gibba
vmacro10244 Vaccinium macrocarpon
vmacro10253 Vaccinium macrocarpon
vmacro14395 Vaccinium macrocarpon
VMungo0720G3138 Vigna mungo
VMungo1127G1970 Vigna mungo
Zm00001eb046680 Zea mays
Zm00001eb303090 Zea mays

User provided reference genes

Program Settings