Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p23390 Brassica napus
A05p14820 Brassica napus
A06p05700 Brassica napus
A08p34960 Brassica napus
A09p43810 Brassica napus
Aa31sc20G20 Aethionema arabicum
Actinidia16110 Actinidia chinensis
Actinidia17464 Actinidia chinensis
Actinidia32810 Actinidia chinensis
Actinidia33764 Actinidia chinensis
Ah.06g192030 Amaranthus hybridus
Ah.11g049890 Amaranthus hybridus
AL1G19230 Arabidopsis lyrata
AL4G25580 Arabidopsis lyrata
Aqoxy2G03578 Aquilegia oxysepala
Aqoxy5G00304 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0I6I28 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DCE16H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FLY1RE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GYBK8P Arachis hypogaea
AT1G08800 Arabidopsis thaliana
AT2G30690 Arabidopsis thaliana
ATR0665G370 Amborella trichopoda
Atru.chr2.860 Acer truncatum
Atru.chr5.1608 Acer truncatum
AUR62001061 Chenopodium quinoa
AUR62004890 Chenopodium quinoa
AUR62011916 Chenopodium quinoa
AUR62032231 Chenopodium quinoa
BcaB02g10338 Brassica carinata
BcaB07g34135 Brassica carinata
BcaC02g11162 Brassica carinata
BcaNung06269 Brassica carinata
BolC3t18923H Brassica oleracea
BolC4t23520H Brassica oleracea
BolC4t27477H Brassica oleracea
BolC5t29446H Brassica oleracea
BolC8t47891H Brassica oleracea
BolC8t48870H Brassica oleracea
BraA04t17866Z Brassica rapa
BraA05t20410Z Brassica rapa
BraA06t23780Z Brassica rapa
BraA08t35407Z Brassica rapa
C03p66510 Brassica napus
C04p19830 Brassica napus
C04p59690 Brassica napus
C05p06870 Brassica napus
C08p12300 Brassica napus
CAN.G134.63 Capsicum annuum
CAN.G1536.1 Capsicum annuum
CAN.G2029.1 Capsicum annuum
CANSAT01G1353 Cannabis sativa
CANSAT54G2416 Cannabis sativa
CARHR008720 Cardamine hirsuta
CARHR124180 Cardamine hirsuta
Carub.0001s0814 Capsella rubella
Carub.0004s1186 Capsella rubella
Ca_09433_v3 Cicer arietinum L.
Ca_09700_v3 Cicer arietinum L.
Cc01_g18640 Coffea canephora
Cc02_g30970 Coffea canephora
CDE06G0252 Ceratophyllum demersum
CDE07G0804 Ceratophyllum demersum
CDE07G0982 Ceratophyllum demersum
Cfa002348 Carpinus fangiana
Cfa006392 Carpinus fangiana
Ciclev10018827m.g Citrus clementina
Ciclev10027718m.g Citrus clementina
CiPaw.04G183500 Carya illinoinensis
CiPaw.07G069700 Carya illinoinensis
ClCG02G016870 Citrullus lanatus
ClCG07G000700 Citrullus lanatus
COL.COLO4_08269 Corchorus olitorius
Cpa.g.c36424 Carica papaya
Cpa.g.c46554 Carica papaya
Cpa.g.sc162.2 Carica papaya
CsaV3_2G003900 Cucumis sativus L.
CsaV3_6G037140 Cucumis sativus L.
CsaV3_6G037150 Cucumis sativus L.
CSS0020864 Camellia sinensis var. sinensis
CSS0025464 Camellia sinensis var. sinensis
CSS0046457 Camellia sinensis var. sinensis
DCAR_000363 Daucus carota
DCAR_006635 Daucus carota
DCAR_012523 Daucus carota
Dinv05261 Davidia involucrata
Dinv22455 Davidia involucrata
Dinv34589 Davidia involucrata
Duzib128G1462 Durio zibethinus
Duzib133G0219 Durio zibethinus
Duzib211G0301 Durio zibethinus
ECA236G2927 Erigeron canadensis
ECA248G1828 Erigeron canadensis
EL10Ac4g09075 Beta vulgaris
EL10Ac5g10445 Beta vulgaris
Eucgr.B02126 Eucalyptus grandis
FAN02G3896 Fragaria x ananassa
FAN05G0024 Fragaria x ananassa
FAN05G1063 Fragaria x ananassa
FAN09G3454 Fragaria x ananassa
FAN14G2146 Fragaria x ananassa
FAN14G3846 Fragaria x ananassa
FAN15G0482 Fragaria x ananassa
FAN20G1571 Fragaria x ananassa
FAN24G1431 Fragaria x ananassa
FAN27G2886 Fragaria x ananassa
FvH4_2g22220 Fragaria vesca
FvH4_6g02500 Fragaria vesca
Glyma.03G248800 Glycine max
Glyma.10G034200 Glycine max
Glyma.13G120400 Glycine max
Glyma.19G246400 Glycine max
Gohir.A07G210300 Gossypium hirsutum
Gohir.A08G045500 Gossypium hirsutum
Gohir.A11G250100 Gossypium hirsutum
Gohir.D07G216300 Gossypium hirsutum
Gohir.D08G055900 Gossypium hirsutum
Gohir.D11G260600 Gossypium hirsutum
Gorai.004G056900 Gossypium raimondii
Gorai.007G279100 Gossypium raimondii
Gorai.013G104100 Gossypium raimondii
GSVIVG01000763001 Vitis vinifera
GSVIVG01036252001 Vitis vinifera
HanXRQChr01g0005281 Helianthus annuus
HanXRQChr04g0115471 Helianthus annuus
HanXRQChr06g0168281 Helianthus annuus
Haze_04382 Corylus avellana
Haze_24557 Corylus avellana
Hma1.2p1_0892F.1_g233390 Hydrangea macrophylla
HPP92_016634 Vanilla planifolia
HPP92_016635 Vanilla planifolia
HPP92_016659 Vanilla planifolia
HPP92_016660 Vanilla planifolia
HPP92_026341 Vanilla planifolia
Hund02891 Selenicereus undatus
Hund06944 Selenicereus undatus
Hund09580 Selenicereus undatus
Lalb_Chr04g0262191 Lupinus albus
Lalb_Chr06g0162571 Lupinus albus
Lj1g0008175 Lotus japonicus
Lj2C1156G2 Lonicera japonica
Lj2C1156T1 Lonicera japonica
Lj5g0019344 Lotus japonicus
Lj7A491T46 Lonicera japonica
Lsat_1_v5_gn_5_186481 Lactuca sativa
Lsat_1_v5_gn_7_11881 Lactuca sativa
Manes.01G200100 Manihot esculenta
Manes.08G136800 Manihot esculenta
Manes.09G150400 Manihot esculenta
MBI04_g38147_MAGBIO Magnolia biondii
MBI11_g10263_MAGBIO Magnolia biondii
MBI11_g43388_MAGBIO Magnolia biondii
MD04G1227500 Malus domestica
MD05G1203200 Malus domestica
MD10G1190500 Malus domestica
MD12G1244200 Malus domestica
Medtr7g115350 Medicago truncatula
MELO3C004405.2 Cucumis melo
MELO3C014398.2 Cucumis melo
Migut.B01116 Erythranthe guttata
Migut.D00396 Erythranthe guttata
MSTRG.16967 Avicennia marina
Nitab4.5_0000086g0300 Nicotiana tabacum
Nitab4.5_0002247g0120 Nicotiana tabacum
Nitab4.5_0004328g0010 Nicotiana tabacum
Nitab4.5_0011211g0010 Nicotiana tabacum
Nn1g02635 Nelumbo nucifera
Nn3g19550 Nelumbo nucifera
Oeu016451.4 Olea europaea
Oeu038468.1 Olea europaea
Oeu039685.3 Olea europaea
Oeu058809.1 Olea europaea
Os03g0164800 Oryza sativa ssp. japonica
Os03g0799200 Oryza sativa ssp. japonica
Peaxi162Scf00647g00013 Petunia axillaris
Peaxi162Scf00719g00312 Petunia axillaris
PGR142G1822 Punica granatum
PGSC0003DMG400027519 Solanum tuberosum
PGSC0003DMG400031422 Solanum tuberosum
Phvul.006G103500 Phaseolus vulgaris
Phvul.007G178800 Phaseolus vulgaris
Potri.002G042500 Populus trichocarpa
Potri.005G220600 Populus trichocarpa
Potri.013G043400 Populus trichocarpa
Potri.019G007802 Populus trichocarpa
Potri.019G012200 Populus trichocarpa
Prupe.6G346700 Prunus persica
Prupe.8G128800 Prunus persica
Prupe.8G229600 Prunus persica
Psat3g187960 Pisum sativum
Psat5g154920 Pisum sativum
Psat5g156200 Pisum sativum
Psat6g055960 Pisum sativum
PSO063G5819 Papaver somniferum
PSO210G5055 Papaver somniferum
PSO832G4493 Papaver somniferum
QL03p028473 Quercus lobata
QL04p081248 Quercus lobata
RcHm_v2.0_Chr3g0450371 Rosa chinensis
RcHm_v2.0_Chr6g0289141 Rosa chinensis
Rhsim07G0073500 Rhododendron simsii
Rhsim07G0073600 Rhododendron simsii
Rhsim13G0032000 Rhododendron simsii
Sabra02G0034200 Salix brachista
Sabra05G0169500 Salix brachista
Sabra05G0169700 Salix brachista
Sabra13G0039700 Salix brachista
Sabra19G0017500 Salix brachista
Sabra19G0024800 Salix brachista
SalBow4G1624 Salvia bowleyana
SalBow4G2942 Salvia bowleyana
SalBow8G2324 Salvia bowleyana
Sc17g0000820 Simmondsia chinensis
Sc20g0000480 Simmondsia chinensis
Sed0000665 Sechium edule
Sed0008916 Sechium edule
Sed0025170 Sechium edule
SGA_v2.0_scaffold172G38978 Striga asiatica
SGA_v2.0_scaffold1G00594 Striga asiatica
SHI31349 Sapria himalayana
Solyc01g097040.4 Solanum lycopersicum
Solyc09g066140.3 Solanum lycopersicum
Sopen01g040730 Solanum pennellii
Sopen09g027900 Solanum pennellii
Sp1g07440 Schrenkiella parvula
Sp4g13200 Schrenkiella parvula
TAR365G0784 Trochodendron aralioides
TAR365G0801 Trochodendron aralioides
TAR374G1686 Trochodendron aralioides
TAR636G0853 Trochodendron aralioides
TAR636G3474 Trochodendron aralioides
THA.LOC104805830 Tarenaya hassleriana
THA.LOC104808028 Tarenaya hassleriana
Thecc.01G264500 Theobroma cacao
Thecc.05G277800 Theobroma cacao
Thhalv10006726m.g Eutrema salsugineum
Thhalv10016299m.g Eutrema salsugineum
TPR.G6980 Trifolium pratense
TWI12G1468 Tripterygium wilfordii
TWI56G0758 Tripterygium wilfordii
unitig_0.g149 Utricularia gibba
vmacro02637 Vaccinium macrocarpon
vmacro13805 Vaccinium macrocarpon
VMungo0540G0971 Vigna mungo
VMungo0720G2556 Vigna mungo
VMungo1215G0950 Vigna mungo
Zm00001eb151710 Zea mays
Zm00001eb403390 Zea mays

User provided reference genes

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