Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p34510 Brassica napus
A05p01170 Brassica napus
A09p53890 Brassica napus
Aa31LG10G15880 Aethionema arabicum
Aa31LG1G28020 Aethionema arabicum
Actinidia07986 Actinidia chinensis
Actinidia07987 Actinidia chinensis
Actinidia20267 Actinidia chinensis
Ah.05g179230 Amaranthus hybridus
AL4G46050 Arabidopsis lyrata
Aqoxy5G04257 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4WGD60 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FJX6IH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JHY2LS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZNI90C Arachis hypogaea
AT2G46620 Arabidopsis thaliana
ATR0620G057 Amborella trichopoda
Atru.chr12.2325 Acer truncatum
Atru.chr5.729 Acer truncatum
AUR62004532 Chenopodium quinoa
AUR62004533 Chenopodium quinoa
AUR62022721 Chenopodium quinoa
BcaC02g12663 Brassica carinata
BcaC02g12677 Brassica carinata
BcaC07g42600 Brassica carinata
BolC4t21786H Brassica oleracea
BolC4t28715H Brassica oleracea
BolC8t51252H Brassica oleracea
BraA05t19118Z Brassica rapa
BraA09t40804Z Brassica rapa
C04p01330 Brassica napus
C08p36700 Brassica napus
CAN.G1415.3 Capsicum annuum
CAN.G414.6 Capsicum annuum
CAN.G481.63 Capsicum annuum
CANSAT21G0534 Cannabis sativa
CANSAT56G3202 Cannabis sativa
CARHR141950 Cardamine hirsuta
CARHR172200 Cardamine hirsuta
Carub.0004s2933 Capsella rubella
Ca_14386_v3 Cicer arietinum L.
Ca_16742_v3 Cicer arietinum L.
Ca_23503_v3 Cicer arietinum L.
Cc02_g01110 Coffea canephora
CDE02G1638 Ceratophyllum demersum
CDE04G1867 Ceratophyllum demersum
CDE07G1973 Ceratophyllum demersum
Cfa003763 Carpinus fangiana
Cfa016191 Carpinus fangiana
Cfa021326 Carpinus fangiana
Ciclev10019936m.g Citrus clementina
Ciclev10023517m.g Citrus clementina
CiPaw.01G079300 Carya illinoinensis
CiPaw.02G042700 Carya illinoinensis
CiPaw.05G201300 Carya illinoinensis
CiPaw.06G043600 Carya illinoinensis
COL.COLO4_06256 Corchorus olitorius
COL.COLO4_16827 Corchorus olitorius
Cpa.g.sc144.13 Carica papaya
CsaV3_3G007840 Cucumis sativus L.
CsaV3_5G000360 Cucumis sativus L.
CSS0016557 Camellia sinensis var. sinensis
CSS0030101 Camellia sinensis var. sinensis
CSS0033189 Camellia sinensis var. sinensis
CSS0034789 Camellia sinensis var. sinensis
DCAR_006982 Daucus carota
DCAR_008670 Daucus carota
DCAR_010581 Daucus carota
Dinv29239 Davidia involucrata
Dinv32621 Davidia involucrata
Duzib068G0459 Durio zibethinus
Duzib133G0891 Durio zibethinus
Duzib138G0875 Durio zibethinus
Duzib205G1318 Durio zibethinus
ECA233G2615 Erigeron canadensis
ECA236G0623 Erigeron canadensis
EL10Ac1g00221 Beta vulgaris
EL10Ac3g05239 Beta vulgaris
Eucgr.D02641 Eucalyptus grandis
Eucgr.K00412 Eucalyptus grandis
FAN01G0288 Fragaria x ananassa
FAN01G1624 Fragaria x ananassa
FAN03G0057 Fragaria x ananassa
FAN03G1126 Fragaria x ananassa
FAN06G2780 Fragaria x ananassa
FAN06G4168 Fragaria x ananassa
FAN10G1365 Fragaria x ananassa
FAN10G1513 Fragaria x ananassa
FAN10G2173 Fragaria x ananassa
FAN10G2272 Fragaria x ananassa
FAN10G2295 Fragaria x ananassa
FvH4_7g17220 Fragaria vesca
FvH4_7g32500 Fragaria vesca
Glyma.03G259300 Glycine max
Glyma.04G232200 Glycine max
Glyma.06G132700 Glycine max
Glyma.07G052700 Glycine max
Glyma.16G021700 Glycine max
Glyma.19G258100 Glycine max
Gohir.A03G051400 Gossypium hirsutum
Gohir.A07G135600 Gossypium hirsutum
Gohir.A08G124100 Gossypium hirsutum
Gohir.A11G099100 Gossypium hirsutum
Gohir.D03G116300 Gossypium hirsutum
Gohir.D07G140600 Gossypium hirsutum
Gohir.D08G145200 Gossypium hirsutum
Gorai.001G152500 Gossypium raimondii
Gorai.003G122600 Gossypium raimondii
Gorai.004G150200 Gossypium raimondii
Gorai.007G110900 Gossypium raimondii
GSVIVG01027397001 Vitis vinifera
HanXRQChr04g0120351 Helianthus annuus
HanXRQChr08g0225671 Helianthus annuus
Haze_00265 Corylus avellana
Haze_15697 Corylus avellana
Hma1.2p1_0512F.1_g169250 Hydrangea macrophylla
HPP92_021001 Vanilla planifolia
HPP92_022340 Vanilla planifolia
HPP92_022356 Vanilla planifolia
Lalb_Chr08g0239971 Lupinus albus
Lalb_Chr10g0100721 Lupinus albus
Lalb_Chr11g0067131 Lupinus albus
Lalb_Chr15g0076411 Lupinus albus
Lj1g0002982 Lotus japonicus
Lj1g0011628 Lotus japonicus
Lj1P1025T40 Lonicera japonica
Lj3A901G77 Lonicera japonica
Lj3g0025530 Lotus japonicus
Lj7P496T51 Lonicera japonica
Lj9P601T32 Lonicera japonica
Lsat_1_v5_gn_7_57201 Lactuca sativa
Lsat_1_v5_gn_8_5601 Lactuca sativa
Lsat_1_v5_gn_9_49441 Lactuca sativa
Manes.01G037900 Manihot esculenta
Manes.01G242800 Manihot esculenta
Manes.01G266732 Manihot esculenta
Manes.05G019300 Manihot esculenta
MBI04_g42980_MAGBIO Magnolia biondii
MBI04_g44913_MAGBIO Magnolia biondii
MD01G1085900 Malus domestica
MD01G1225700 Malus domestica
MD02G1229200 Malus domestica
MD07G1155000 Malus domestica
MD07G1296200 Malus domestica
Medtr3g092060 Medicago truncatula
Medtr7g117950 Medicago truncatula
Medtr8g027200 Medicago truncatula
MELO3C005897.2 Cucumis melo
MELO3C006000.2 Cucumis melo
Migut.F01007 Erythranthe guttata
Migut.N01526 Erythranthe guttata
MSTRG.17368 Avicennia marina
MSTRG.27001 Avicennia marina
MSTRG.28277 Avicennia marina
MSTRG.8533 Avicennia marina
MSTRG.8629 Avicennia marina
Nitab4.5_0000015g0160 Nicotiana tabacum
Nitab4.5_0000307g0120 Nicotiana tabacum
Nitab4.5_0001829g0030 Nicotiana tabacum
Nitab4.5_0002527g0030 Nicotiana tabacum
Nitab4.5_0008259g0010 Nicotiana tabacum
Nn1g00368 Nelumbo nucifera
Nn3g18891 Nelumbo nucifera
Oeu004971.1 Olea europaea
Oeu007873.1 Olea europaea
Oeu042951.1 Olea europaea
Oeu043314.1 Olea europaea
Oeu061010.1 Olea europaea
Os01g0354450 Oryza sativa ssp. japonica
Os03g0114400 Oryza sativa ssp. japonica
Os10g0519300 Oryza sativa ssp. japonica
Peaxi162Scf00618g00025 Petunia axillaris
Peaxi162Scf00740g00045 Petunia axillaris
Peaxi162Scf00767g10014 Petunia axillaris
PGR031G2241 Punica granatum
PGR142G1625 Punica granatum
PGSC0003DMG400005468 Solanum tuberosum
PGSC0003DMG400018514 Solanum tuberosum
Phvul.006G115600 Phaseolus vulgaris
Phvul.009G048600 Phaseolus vulgaris
Phvul.010G116600 Phaseolus vulgaris
Potri.002G175600 Populus trichocarpa
Potri.012G020800 Populus trichocarpa
Potri.014G102300 Populus trichocarpa
Potri.015G007800 Populus trichocarpa
Prupe.2G193700 Prunus persica
Prupe.2G315800 Prunus persica
Psat3g001720 Pisum sativum
Psat4g163280 Pisum sativum
Psat5g074480 Pisum sativum
PSO339G4453 Papaver somniferum
PSO384G5012 Papaver somniferum
QL08p046236 Quercus lobata
QL09p007588 Quercus lobata
RcHm_v2.0_Chr1g0360611 Rosa chinensis
RcHm_v2.0_Chr1g0382341 Rosa chinensis
RcHm_v2.0_Chr2g0086831 Rosa chinensis
RcHm_v2.0_Chr3g0458211 Rosa chinensis
RcHm_v2.0_Chr3g0478421 Rosa chinensis
RcHm_v2.0_Chr4g0427361 Rosa chinensis
Rhsim03G0212400 Rhododendron simsii
Rhsim07G0001700 Rhododendron simsii
Sabra02G0138000 Salix brachista
Sabra12G0012400 Salix brachista
Sabra14G0075300 Salix brachista
Sabra15G0005900 Salix brachista
SalBow2G0081 Salvia bowleyana
SalBow3G0507 Salvia bowleyana
SalBow3G3224 Salvia bowleyana
SalBow5G4238 Salvia bowleyana
Sc01g0002390 Simmondsia chinensis
Sed0007373 Sechium edule
Sed0017968 Sechium edule
Sed0025972 Sechium edule
SEGI_41283 Sequoiadendron giganteum
SGA_v2.0_scaffold232G43539 Striga asiatica
SHI13041 Sapria himalayana
Solyc01g096230.4 Solanum lycopersicum
Solyc03g082640.3 Solanum lycopersicum
Solyc06g053150.1 Solanum lycopersicum
Sopen01g039990 Solanum pennellii
Sopen03g022400 Solanum pennellii
Sopen06g018220 Solanum pennellii
Sp4g28670 Schrenkiella parvula
Sp5g01500 Schrenkiella parvula
TAR375G0012 Trochodendron aralioides
TAR629G2269 Trochodendron aralioides
THA.LOC104817386 Tarenaya hassleriana
THA.LOC104827635 Tarenaya hassleriana
Thecc.01G337100 Theobroma cacao
Thecc.03G205000 Theobroma cacao
Thhalv10028615m.g Eutrema salsugineum
TPR.G35135 Trifolium pratense
TWI14G0829 Tripterygium wilfordii
TWI39G0490 Tripterygium wilfordii
TWI59G0899 Tripterygium wilfordii
unitig_22.g6819 Utricularia gibba
unitig_37.g11989 Utricularia gibba
unitig_45.g31543 Utricularia gibba
unitig_578.g16505 Utricularia gibba
unitig_92.g28245 Utricularia gibba
vmacro06418 Vaccinium macrocarpon
VMungo0331G1994 Vigna mungo
VMungo0540G2060 Vigna mungo
VMungo1309G2457 Vigna mungo
Zm00001eb000930 Zea mays
Zm00001eb043400 Zea mays
Zm00001eb220050 Zea mays

User provided reference genes

Program Settings