Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p27820 Brassica napus
A06p30040 Brassica napus
A09p08220 Brassica napus
Aa31LG1G18630 Aethionema arabicum
Aa31LG3G5780 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3523 Anthoceros agrestis
Actinidia08861 Actinidia chinensis
Actinidia09671 Actinidia chinensis
Actinidia25593 Actinidia chinensis
Ah.02g115310 Amaranthus hybridus
AL8G24490 Arabidopsis lyrata
AL8G40460 Arabidopsis lyrata
Aqoxy3G01479 Aquilegia oxysepala
Aqoxy5G03471 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.439XX2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N7FYSY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q2MK8D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V9HKJ8 Arachis hypogaea
AT5G50370 Arabidopsis thaliana
AT5G63400 Arabidopsis thaliana
ATR0686G103 Amborella trichopoda
Atru.chr11.2281 Acer truncatum
Atru.chr9.1090 Acer truncatum
AUR62025914 Chenopodium quinoa
AUR62029641 Chenopodium quinoa
BcaB01g02895 Brassica carinata
BcaB04g19914 Brassica carinata
BcaC01g02586 Brassica carinata
BcaC04g23324 Brassica carinata
BcaC04g23325 Brassica carinata
BolC3t15676H Brassica oleracea
BolC3t18572H Brassica oleracea
BolC9t53842H Brassica oleracea
BraA03t11993Z Brassica rapa
BraA06t25956Z Brassica rapa
BraA09t36473Z Brassica rapa
C03p33550 Brassica napus
C03p63170 Brassica napus
C09p09290 Brassica napus
CAN.G352.31 Capsicum annuum
CANSAT01G2479 Cannabis sativa
CANSAT80G0785 Cannabis sativa
CARHR258120 Cardamine hirsuta
CARHR277230 Cardamine hirsuta
Carub.0008s1046 Capsella rubella
Carub.0008s2411 Capsella rubella
Ca_26490_v3 Cicer arietinum L.
Ca_29351_v3 Cicer arietinum L.
CBR_g34141 Chara braunii
Cc04_g09990 Coffea canephora
CDE08G1451 Ceratophyllum demersum
Cfa009346 Carpinus fangiana
Cfa018858 Carpinus fangiana
Cfa022295 Carpinus fangiana
Cfa026576 Carpinus fangiana
Ciclev10021896m.g Citrus clementina
Ciclev10032565m.g Citrus clementina
CiPaw.05G113800 Carya illinoinensis
CiPaw.11G009800 Carya illinoinensis
CiPaw.12G037500 Carya illinoinensis
ClCG03G003640 Citrullus lanatus
ClCG06G017760 Citrullus lanatus
COL.COLO4_12819 Corchorus olitorius
COL.COLO4_28076 Corchorus olitorius
Cpa.g.sc13.148 Carica papaya
Cre12.g557600 Chlamydomonas reinhardtii
CsaV3_1G000690 Cucumis sativus L.
CsaV3_1G009500 Cucumis sativus L.
CSS0016658 Camellia sinensis var. sinensis
CSS0016897 Camellia sinensis var. sinensis
CSS0037904 Camellia sinensis var. sinensis
CSS0042717 Camellia sinensis var. sinensis
DCAR_026217 Daucus carota
DCAR_031185 Daucus carota
Dinv04862 Davidia involucrata
Dinv10982 Davidia involucrata
Dinv11151 Davidia involucrata
Dinv15226 Davidia involucrata
Duzib068G0202 Durio zibethinus
Duzib084G1110 Durio zibethinus
Duzib205G1650 Durio zibethinus
Duzib248G0861 Durio zibethinus
ECA246G1243 Erigeron canadensis
ECA246G3428 Erigeron canadensis
EL10As4g23425 Beta vulgaris
Eucgr.B00131 Eucalyptus grandis
Eucgr.K02740 Eucalyptus grandis
FAN04G1545 Fragaria x ananassa
FAN08G3152 Fragaria x ananassa
FAN13G0914 Fragaria x ananassa
FvH4_5g07870 Fragaria vesca
Glyma.05G046100 Glycine max
Glyma.05G046300 Glycine max
Glyma.06G171800 Glycine max
Glyma.17G128300 Glycine max
Gohir.A01G155600 Gossypium hirsutum
Gohir.A07G052300 Gossypium hirsutum
Gohir.A08G156600 Gossypium hirsutum
Gohir.A09G246400 Gossypium hirsutum
Gohir.A12G078644 Gossypium hirsutum
Gohir.A12G188400 Gossypium hirsutum
Gohir.D01G154500 Gossypium hirsutum
Gohir.D07G056800 Gossypium hirsutum
Gohir.D09G247000 Gossypium hirsutum
Gohir.D12G191066 Gossypium hirsutum
Gorai.001G060300 Gossypium raimondii
Gorai.002G191300 Gossypium raimondii
Gorai.006G271500 Gossypium raimondii
Gorai.008G205200 Gossypium raimondii
GSVIVG01008505001 Vitis vinifera
GSVIVG01010361001 Vitis vinifera
HanXRQChr05g0153941 Helianthus annuus
HanXRQChr06g0174951 Helianthus annuus
HanXRQChr10g0318251 Helianthus annuus
HanXRQChr11g0347101 Helianthus annuus
Haze_07242 Corylus avellana
Haze_26806 Corylus avellana
Haze_26916 Corylus avellana
Hma1.2p1_0014F.1_g009700 Hydrangea macrophylla
Hma1.2p1_1954F.1_g308880 Hydrangea macrophylla
HPP92_023203 Vanilla planifolia
HPP92_024231 Vanilla planifolia
HPP92_024249 Vanilla planifolia
Hund02423 Selenicereus undatus
Hund10183 Selenicereus undatus
Lalb_Chr07g0183291 Lupinus albus
Lalb_Chr08g0237051 Lupinus albus
Lalb_Chr11g0069661 Lupinus albus
Lalb_Chr12g0202121 Lupinus albus
Lj1g0011916 Lotus japonicus
Lj4g0007215 Lotus japonicus
Lj5A97G89 Lonicera japonica
Lj6A823G48 Lonicera japonica
Lsat_1_v5_gn_3_29621 Lactuca sativa
Lsat_1_v5_gn_4_76541 Lactuca sativa
Lsat_1_v5_gn_5_13541 Lactuca sativa
Lsat_1_v5_gn_8_149620 Lactuca sativa
Manes.06G117800 Manihot esculenta
Manes.13G016600 Manihot esculenta
Manes.14G053400 Manihot esculenta
Mapoly0019s0102 Marchantia polymorpha
MBI19_g20936_MAGBIO Magnolia biondii
MBI19_g42085_MAGBIO Magnolia biondii
MCO03G541 Micromonas commoda
MCO04G223 Micromonas commoda
MCO07G091 Micromonas commoda
MCO15G697 Micromonas commoda
MD06G1145300 Malus domestica
MD14G1160000 Malus domestica
Medtr4g103800 Medicago truncatula
MELO3C002349.2 Cucumis melo
MELO3C026227.2 Cucumis melo
Migut.D01244 Erythranthe guttata
Migut.I00516 Erythranthe guttata
MSTRG.11287 Avicennia marina
MSTRG.22908 Avicennia marina
Nitab4.5_0000148g0020 Nicotiana tabacum
Nitab4.5_0000955g0030 Nicotiana tabacum
Nitab4.5_0001664g0010 Nicotiana tabacum
Nitab4.5_0003103g0020 Nicotiana tabacum
Nitab4.5_0003680g0040 Nicotiana tabacum
Nitab4.5_0013256g0010 Nicotiana tabacum
Nn3g16525 Nelumbo nucifera
Nn4g22388 Nelumbo nucifera
Oeu001896.1 Olea europaea
Oeu019044.1 Olea europaea
Oeu023477.1 Olea europaea
Oeu045462.1 Olea europaea
Oeu052210.1 Olea europaea
Oeu052212.1 Olea europaea
Os11g0312220 Oryza sativa ssp. japonica
Os11g0312400 Oryza sativa ssp. japonica
Os12g0236400 Oryza sativa ssp. japonica
Peaxi162Scf00089g00431 Petunia axillaris
Peaxi162Scf00128g01038 Petunia axillaris
Peaxi162Scf00536g00311 Petunia axillaris
PGR044G1994 Punica granatum
PGR083G2753 Punica granatum
PGSC0003DMG400001247 Solanum tuberosum
PGSC0003DMG400015187 Solanum tuberosum
Phvul.003G209400 Phaseolus vulgaris
Potri.012G095300 Populus trichocarpa
Potri.015G092800 Populus trichocarpa
Pp3c11_11060 Physcomitrium patens
Pp3c11_22230 Physcomitrium patens
Pp3c2_28130 Physcomitrium patens
PRCOL_00006083 Prasinoderma coloniale
PRCOL_00006173 Prasinoderma coloniale
Prupe.5G153600 Prunus persica
Psat4g064040 Pisum sativum
PSO017G2539 Papaver somniferum
PSO384G0626 Papaver somniferum
PSO478G5263 Papaver somniferum
PSO591G0151 Papaver somniferum
PSO832G4471 Papaver somniferum
QL03p054555 Quercus lobata
QL03p054560 Quercus lobata
QL10p004376 Quercus lobata
RcHm_v2.0_Chr7g0190591 Rosa chinensis
Rhsim12G0104400 Rhododendron simsii
Rhsim12G0173500 Rhododendron simsii
Sabra12G0070000 Salix brachista
Sabra15G0114500 Salix brachista
SalBow5G2671 Salvia bowleyana
Sc04g0000760 Simmondsia chinensis
Sed0003003 Sechium edule
Sed0004457 Sechium edule
SGA_v2.0_scaffold161G37777 Striga asiatica
SGA_v2.0_scaffold215G42340 Striga asiatica
SGA_v2.0_scaffold40G15655 Striga asiatica
SGA_v2.0_scaffold5G02874 Striga asiatica
SMO147G0349 Selaginella moellendorffii
SMO198G0006 Selaginella moellendorffii
SMO358G0192 Selaginella moellendorffii
Solyc03g111200.3 Solanum lycopersicum
Solyc05g014980.4 Solanum lycopersicum
Sopen05g010070 Solanum pennellii
Sp2g26490 Schrenkiella parvula
Sp6g12520 Schrenkiella parvula
SpUn0015_0140 Schrenkiella parvula
SpUn0050_0020 Schrenkiella parvula
TAR374G1367 Trochodendron aralioides
TAR622G1233 Trochodendron aralioides
TAR629G3125 Trochodendron aralioides
THA.LOC104798951 Tarenaya hassleriana
THA.LOC104811598 Tarenaya hassleriana
THA.LOC104825011 Tarenaya hassleriana
Thecc.02G275500 Theobroma cacao
Thecc.03G126100 Theobroma cacao
Thhalv10004838m.g Eutrema salsugineum
Thhalv10014224m.g Eutrema salsugineum
TPR.G10955 Trifolium pratense
TWI14G0327 Tripterygium wilfordii
TWI36G0855 Tripterygium wilfordii
TWI36G1157 Tripterygium wilfordii
TWI39G0434 Tripterygium wilfordii
unitig_747.g21329 Utricularia gibba
vmacro16127 Vaccinium macrocarpon
vmacro16666 Vaccinium macrocarpon
vmacro19220 Vaccinium macrocarpon
vmacro20927 Vaccinium macrocarpon
VMungo1215G3398 Vigna mungo
Zm00001eb109850 Zea mays
Zm00001eb133450 Zea mays
Zm00001eb158850 Zea mays
Zm00001eb239710 Zea mays
Zm00001eb370400 Zea mays
Zm00001eb411760 Zea mays

User provided reference genes

Program Settings