Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p00700 Brassica napus
A10p06490 Brassica napus
Aa31LG3G16250 Aethionema arabicum
Aa31sc152G20 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3406 Anthoceros agrestis
Actinidia11644 Actinidia chinensis
Actinidia15340 Actinidia chinensis
AL1G53420 Arabidopsis lyrata
AL6G21430 Arabidopsis lyrata
Aqoxy5G01597 Aquilegia oxysepala
Aqoxy6G00003 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3I28FP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5N4VNG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FRF4XF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ME03Z4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N4IWB8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TK8AAC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ULZ0R3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y21F8V Arachis hypogaea
AT1G47271 Arabidopsis thaliana
AT5G10860 Arabidopsis thaliana
ATR0568G077 Amborella trichopoda
ATR0796G115 Amborella trichopoda
Atru.chr10.2378 Acer truncatum
Atru.chr10.2379 Acer truncatum
Atru.chr10.2402 Acer truncatum
Atru.chr13.449 Acer truncatum
Atru.chr2.2534 Acer truncatum
Atru.chr2.2541 Acer truncatum
Atru.chr2.2572 Acer truncatum
Atru.chr2.2573 Acer truncatum
Atru.chr2.3728 Acer truncatum
AUR62008631 Chenopodium quinoa
AUR62033140 Chenopodium quinoa
AUR62033854 Chenopodium quinoa
AUR62041669 Chenopodium quinoa
BcaB07g33845 Brassica carinata
BcaC03g13337 Brassica carinata
BcaC04g19279 Brassica carinata
BcaC08g42940 Brassica carinata
BolC2t06430H Brassica oleracea
BraA02t05056Z Brassica rapa
BraA10t44733Z Brassica rapa
C02p04700 Brassica napus
C06p01840 Brassica napus
C09p65930 Brassica napus
CAN.G1226.34 Capsicum annuum
CAN.G3.17 Capsicum annuum
CANSAT25G2476 Cannabis sativa
CANSAT54G1115 Cannabis sativa
CARHR036830 Cardamine hirsuta
CARHR202420 Cardamine hirsuta
Carub.0001s3606 Capsella rubella
Carub.0006s0936 Capsella rubella
Ca_05734_v3 Cicer arietinum L.
Ca_15507_v3 Cicer arietinum L.
CBR_g45690 Chara braunii
Cc01_g15650 Coffea canephora
Cc10_g02710 Coffea canephora
CDE05G2195 Ceratophyllum demersum
CDE11G0548 Ceratophyllum demersum
Cfa018171 Carpinus fangiana
Cfa018684 Carpinus fangiana
Ciclev10003449m.g Citrus clementina
Ciclev10003909m.g Citrus clementina
CiPaw.13G059200 Carya illinoinensis
CiPaw.14G047200 Carya illinoinensis
CiPaw.15G080500 Carya illinoinensis
CiPaw.16G059800 Carya illinoinensis
CiPaw.16G060000 Carya illinoinensis
ClCG02G018900 Citrullus lanatus
ClCG08G014900 Citrullus lanatus
COL.COLO4_26293 Corchorus olitorius
Cpa.g.sc70.24 Carica papaya
CsaV3_2G028860 Cucumis sativus L.
CsaV3_6G013290 Cucumis sativus L.
CSS0000014 Camellia sinensis var. sinensis
CSS0000778 Camellia sinensis var. sinensis
CSS0011393 Camellia sinensis var. sinensis
CSS0015861 Camellia sinensis var. sinensis
CSS0017435 Camellia sinensis var. sinensis
CSS0023381 Camellia sinensis var. sinensis
CSS0023896 Camellia sinensis var. sinensis
CSS0045685 Camellia sinensis var. sinensis
DCAR_017551 Daucus carota
DCAR_018596 Daucus carota
Dinv18269 Davidia involucrata
Dinv29695 Davidia involucrata
Dinv36097 Davidia involucrata
Dinv39432 Davidia involucrata
Duzib093G0419 Durio zibethinus
Duzib116G0938 Durio zibethinus
Duzib192G0625 Durio zibethinus
Duzib213G1068 Durio zibethinus
ECA232G0746 Erigeron canadensis
ECA247G0838 Erigeron canadensis
ECA248G2863 Erigeron canadensis
EL10Ac7g17508 Beta vulgaris
Eucgr.F01886 Eucalyptus grandis
Eucgr.J03199 Eucalyptus grandis
Eucgr.L01179 Eucalyptus grandis
FAN11G1411 Fragaria x ananassa
FAN15G2852 Fragaria x ananassa
FAN16G0641 Fragaria x ananassa
FAN20G1560 Fragaria x ananassa
FAN21G3752 Fragaria x ananassa
FAN25G0793 Fragaria x ananassa
FAN27G1556 Fragaria x ananassa
FvH4_2g39650 Fragaria vesca
FvH4_3g41290 Fragaria vesca
Glyma.02G238700 Glycine max
Glyma.04G031200 Glycine max
Glyma.06G031300 Glycine max
Glyma.14G207600 Glycine max
Gohir.A06G009500 Gossypium hirsutum
Gohir.A13G125200 Gossypium hirsutum
Gohir.D06G005000 Gossypium hirsutum
Gohir.D13G128900 Gossypium hirsutum
Gorai.010G009600 Gossypium raimondii
Gorai.013G145100 Gossypium raimondii
GSVIVG01009726001 Vitis vinifera
GSVIVG01024516001 Vitis vinifera
HanXRQChr01g0013431 Helianthus annuus
HanXRQChr08g0231041 Helianthus annuus
HanXRQChr09g0269041 Helianthus annuus
Haze_07069 Corylus avellana
Haze_07070 Corylus avellana
Haze_12556 Corylus avellana
Haze_15922 Corylus avellana
Haze_17944 Corylus avellana
Hma1.2p1_0161F.1_g071920 Hydrangea macrophylla
Hma1.2p1_0203F.1_g086260 Hydrangea macrophylla
Hma1.2p1_1631F.1_g294600 Hydrangea macrophylla
HPP92_011045 Vanilla planifolia
Hund18151 Selenicereus undatus
Hund26586 Selenicereus undatus
Lalb_Chr10g0103911 Lupinus albus
Lalb_Chr15g0085501 Lupinus albus
Lalb_Chr18g0053981 Lupinus albus
Lalb_Chr20g0117221 Lupinus albus
Lalb_Chr23g0266561 Lupinus albus
Lj1g0017478 Lotus japonicus
Lj2A1108T32 Lonicera japonica
Lj4A787G17 Lonicera japonica
LjContig00141g0017332 Lotus japonicus
Lsat_1_v5_gn_4_117501 Lactuca sativa
Lsat_1_v5_gn_9_15561 Lactuca sativa
Manes.02G210000 Manihot esculenta
Manes.18G023300 Manihot esculenta
Manes.18G121800 Manihot esculenta
Mapoly0160s0023 Marchantia polymorpha
MBI10_g18262_MAGBIO Magnolia biondii
MBI18_g38874_MAGBIO Magnolia biondii
MCO02G061 Micromonas commoda
MCO02G350 Micromonas commoda
MD03G1045900 Malus domestica
MD08G1030200 Malus domestica
MD11G1048200 Malus domestica
Medtr3g111940 Medicago truncatula
Medtr5g076080 Medicago truncatula
Medtr6g037360 Medicago truncatula
MELO3C010955.2 Cucumis melo
MELO3C019601.2 Cucumis melo
Migut.D00782 Erythranthe guttata
Migut.N00697 Erythranthe guttata
MSTRG.12726 Avicennia marina
MSTRG.17940 Avicennia marina
Nitab4.5_0000539g0040 Nicotiana tabacum
Nitab4.5_0001759g0050 Nicotiana tabacum
Nitab4.5_0002224g0160 Nicotiana tabacum
Nitab4.5_0004383g0020 Nicotiana tabacum
Nn1g09382 Nelumbo nucifera
Nn5g29642 Nelumbo nucifera
Nn7g37404 Nelumbo nucifera
Oeu034604.1 Olea europaea
Oeu037695.1 Olea europaea
Os01g0634900 Oryza sativa ssp. japonica
Os03g0737000 Oryza sativa ssp. japonica
Peaxi162Scf00020g01813 Petunia axillaris
Peaxi162Scf00293g00510 Petunia axillaris
PGR031G0902 Punica granatum
PGR102G0880 Punica granatum
PGSC0003DMG400003738 Solanum tuberosum
PGSC0003DMG400020298 Solanum tuberosum
Phvul.008G243300 Phaseolus vulgaris
Phvul.009G058600 Phaseolus vulgaris
Potri.002G034800 Populus trichocarpa
Potri.005G228300 Populus trichocarpa
Potri.013G161500 Populus trichocarpa
Potri.017G000100 Populus trichocarpa
Pp3c16_22830 Physcomitrium patens
Pp3c25_12010 Physcomitrium patens
Pp3c5_24660 Physcomitrium patens
PRCOL_00000402 Prasinoderma coloniale
Prupe.1G377900 Prunus persica
Prupe.6G037200 Prunus persica
Psat2g048800 Pisum sativum
Psat5g012080 Pisum sativum
PSO170G0342 Papaver somniferum
PSO357G0408 Papaver somniferum
PSO407G0099 Papaver somniferum
QL01p023409 Quercus lobata
QL02p008982 Quercus lobata
RcHm_v2.0_Chr5g0074091 Rosa chinensis
RcHm_v2.0_Chr6g0301241 Rosa chinensis
Rhsim06G0032000 Rhododendron simsii
Sabra05G0176200 Salix brachista
Sabra13G0129100 Salix brachista
SalBow2G0190 Salvia bowleyana
SalBow7G3773 Salvia bowleyana
Sc10g0009450 Simmondsia chinensis
Sc26g0003570 Simmondsia chinensis
Sed0005884 Sechium edule
Sed0008479 Sechium edule
Sed0017810 Sechium edule
SEGI_38927 Sequoiadendron giganteum
SGA_v2.0_scaffold1311G53909 Striga asiatica
SGA_v2.0_scaffold201G41410 Striga asiatica
SGA_v2.0_scaffold77G25334 Striga asiatica
SMO143G0004 Selaginella moellendorffii
Solyc04g080510.3 Solanum lycopersicum
Solyc09g018750.3 Solanum lycopersicum
Sopen04g034100 Solanum pennellii
Sopen09g012290 Solanum pennellii
Sp1g34410 Schrenkiella parvula
Sp6g32610 Schrenkiella parvula
TAR381G1655 Trochodendron aralioides
TAR623G0286 Trochodendron aralioides
THA.LOC104799019 Tarenaya hassleriana
THA.LOC104812559 Tarenaya hassleriana
THA.LOC104814988 Tarenaya hassleriana
Thecc.01G000200 Theobroma cacao
Thecc.08G029000 Theobroma cacao
Thecc.09G366900 Theobroma cacao
Thhalv10011792m.g Eutrema salsugineum
Thhalv10014695m.g Eutrema salsugineum
TPR.G12403 Trifolium pratense
TPR.G15401 Trifolium pratense
TWI31G1369 Tripterygium wilfordii
TWI36G0669 Tripterygium wilfordii
unitig_0.g2154 Utricularia gibba
unitig_22.g5199 Utricularia gibba
unitig_6.g29276 Utricularia gibba
unitig_747.g21435 Utricularia gibba
vmacro02854 Vaccinium macrocarpon
vmacro21651 Vaccinium macrocarpon
VMungo0647G2108 Vigna mungo
VMungo1309G1079 Vigna mungo
Zm00001eb056450 Zea mays

User provided reference genes

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