Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p39260 Brassica napus
A07p06850 Brassica napus
A10p04370 Brassica napus
Aa31LG1G19030 Aethionema arabicum
Aa31sc1463G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_340.122 Anthoceros agrestis
Actinidia12341 Actinidia chinensis
Actinidia18387 Actinidia chinensis
Actinidia20612 Actinidia chinensis
Ah.01g003440 Amaranthus hybridus
AL1G15510 Arabidopsis lyrata
AL3G41820 Arabidopsis lyrata
AL8G21020 Arabidopsis lyrata
Aqoxy4G02328 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.CKCA5J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IMCH57 Arachis hypogaea
AT1G05610 Arabidopsis thaliana
AT5G48300 Arabidopsis thaliana
ATR0743G109 Amborella trichopoda
ATR0751G029 Amborella trichopoda
Atru.chr3.1967 Acer truncatum
Atru.chr6.3447 Acer truncatum
AUR62002493 Chenopodium quinoa
AUR62023692 Chenopodium quinoa
AUR62025100 Chenopodium quinoa
AUR62037153 Chenopodium quinoa
BcaB02g06836 Brassica carinata
BcaB04g19569 Brassica carinata
BcaB06g26766 Brassica carinata
BcaC05g24359 Brassica carinata
BcaC06g30811 Brassica carinata
BcaC06g35827 Brassica carinata
BolC5t29175H Brassica oleracea
BolC7t41513H Brassica oleracea
BolC7t44426H Brassica oleracea
BraA06t26840Z Brassica rapa
BraA07t28477Z Brassica rapa
BraA10t42704Z Brassica rapa
C05p03970 Brassica napus
C07p10430 Brassica napus
C07p39080 Brassica napus
CAN.G164.10 Capsicum annuum
CAN.G585.15 Capsicum annuum
CAN.G607.12 Capsicum annuum
CANSAT56G0754 Cannabis sativa
CANSAT64G0784 Cannabis sativa
CARHR005110 Cardamine hirsuta
CARHR102050 Cardamine hirsuta
CARHR183990 Cardamine hirsuta
Carub.0001s0494 Capsella rubella
Carub.0008s0785 Capsella rubella
Ca_06444_v3 Cicer arietinum L.
Ca_16323_v3 Cicer arietinum L.
CBR_g21791 Chara braunii
Cc03_g16160 Coffea canephora
Cc05_g09820 Coffea canephora
CDE03G0193 Ceratophyllum demersum
CDE06G2395 Ceratophyllum demersum
CDE08G0935 Ceratophyllum demersum
Cfa014191 Carpinus fangiana
Ciclev10014741m.g Citrus clementina
Ciclev10023789m.g Citrus clementina
CiPaw.01G202800 Carya illinoinensis
CiPaw.04G198100 Carya illinoinensis
ClCG02G003100 Citrullus lanatus
COL.COLO4_14409 Corchorus olitorius
COL.COLO4_19678 Corchorus olitorius
Cpa.g.sc136.75 Carica papaya
Cpa.g.sc9.244 Carica papaya
Cre03.g188250 Chlamydomonas reinhardtii
CsaV3_7G002310 Cucumis sativus L.
CSS0026130 Camellia sinensis var. sinensis
CSS0027173 Camellia sinensis var. sinensis
CSS0035735 Camellia sinensis var. sinensis
DCAR_013816 Daucus carota
DCAR_021075 Daucus carota
Dinv05341 Davidia involucrata
Dinv21331 Davidia involucrata
Dinv24742 Davidia involucrata
Duzib093G0077 Durio zibethinus
Duzib133G0043 Durio zibethinus
Duzib138G0676 Durio zibethinus
ECA236G3570 Erigeron canadensis
ECA238G4232 Erigeron canadensis
ECA246G0173 Erigeron canadensis
EL10Ac3g06179 Beta vulgaris
EL10Ac4g08580 Beta vulgaris
EL10Ac9g22352 Beta vulgaris
Eucgr.A00322 Eucalyptus grandis
Eucgr.A00411 Eucalyptus grandis
Eucgr.K01372 Eucalyptus grandis
FAN02G2020 Fragaria x ananassa
FAN05G0312 Fragaria x ananassa
FAN09G3843 Fragaria x ananassa
FAN14G1524 Fragaria x ananassa
FAN23G1619 Fragaria x ananassa
FvH4_6g40220 Fragaria vesca
Glyma.02G304500 Glycine max
Glyma.14G009300 Glycine max
Gohir.A01G231100 Gossypium hirsutum
Gohir.A07G162500 Gossypium hirsutum
Gohir.A07G194100 Gossypium hirsutum
Gohir.A11G146800 Gossypium hirsutum
Gohir.D01G221200 Gossypium hirsutum
Gohir.D07G169100 Gossypium hirsutum
Gohir.D07G200200 Gossypium hirsutum
Gohir.D11G153500 Gossypium hirsutum
Gorai.001G224500 Gossypium raimondii
Gorai.002G267800 Gossypium raimondii
Gorai.007G163700 Gossypium raimondii
Gorai.N000500 Gossypium raimondii
GSVIVG01030141001 Vitis vinifera
GSVIVG01038262001 Vitis vinifera
HanXRQChr11g0329781 Helianthus annuus
HanXRQChr16g0515251 Helianthus annuus
HanXRQChr16g0526931 Helianthus annuus
Haze_11112 Corylus avellana
Haze_12570 Corylus avellana
Hma1.2p1_0872F.1_g231190 Hydrangea macrophylla
HPP92_000127 Vanilla planifolia
Hund08096 Selenicereus undatus
Lalb_Chr04g0247361 Lupinus albus
Lalb_Chr04g0247561 Lupinus albus
Lj1A802T39 Lonicera japonica
Lj6A283T16 Lonicera japonica
Lj8A139G61 Lonicera japonica
LjContig00081g0017715 Lotus japonicus
Lsat_1_v5_gn_3_70221 Lactuca sativa
Lsat_1_v5_gn_4_65361 Lactuca sativa
Lsat_1_v5_gn_7_98980 Lactuca sativa
Manes.05G208000 Manihot esculenta
Manes.12G067900 Manihot esculenta
Manes.13G058900 Manihot esculenta
Mapoly0033s0108 Marchantia polymorpha
MBI10_g35391_MAGBIO Magnolia biondii
MBI14_g37688_MAGBIO Magnolia biondii
MBI15_g41440_MAGBIO Magnolia biondii
MCO15G288 Micromonas commoda
MD02G1000500 Malus domestica
MD09G1133900 Malus domestica
MD15G1142300 Malus domestica
MD17G1122900 Malus domestica
Medtr3g082150 Medicago truncatula
Medtr5g097010 Medicago truncatula
MELO3C024175.2 Cucumis melo
Migut.M00521 Erythranthe guttata
Migut.M01475 Erythranthe guttata
Migut.N03018 Erythranthe guttata
MSTRG.6733 Avicennia marina
MSTRG.7110 Avicennia marina
Nitab4.5_0000013g0010 Nicotiana tabacum
Nitab4.5_0001022g0030 Nicotiana tabacum
Nitab4.5_0007468g0020 Nicotiana tabacum
Nitab4.5_0010298g0010 Nicotiana tabacum
Nn1g07671 Nelumbo nucifera
Nn1g08320 Nelumbo nucifera
Nn1g09412 Nelumbo nucifera
Nn6g32339 Nelumbo nucifera
Oeu016933.1 Olea europaea
Oeu017921.2 Olea europaea
Oeu019240.1 Olea europaea
Oeu056138.1 Olea europaea
Oeu056139.1 Olea europaea
Os08g0345800 Oryza sativa ssp. japonica
Os09g0298200 Oryza sativa ssp. japonica
Peaxi162Scf00111g00412 Petunia axillaris
Peaxi162Scf01205g00151 Petunia axillaris
PGR042G1432 Punica granatum
PGR044G2172 Punica granatum
PGSC0003DMG400025218 Solanum tuberosum
PGSC0003DMG400031084 Solanum tuberosum
PGSC0003DMG400046891 Solanum tuberosum
Phvul.008G284000 Phaseolus vulgaris
Potri.007G146100 Populus trichocarpa
Potri.014G171800 Populus trichocarpa
Potri.017G001700 Populus trichocarpa
Pp3c11_8270 Physcomitrium patens
Pp3c2_35010 Physcomitrium patens
Pp3c7_20320 Physcomitrium patens
Pp3c7_20690 Physcomitrium patens
PRCOL_00002756 Prasinoderma coloniale
Prupe.3G192600 Prunus persica
Prupe.7G270900 Prunus persica
Psat2g005160 Pisum sativum
Psat5g110720 Pisum sativum
PSO017G6511 Papaver somniferum
PSO170G4066 Papaver somniferum
PSO357G0179 Papaver somniferum
PSO478G5127 Papaver somniferum
QL04p065851 Quercus lobata
QL04p065986 Quercus lobata
QL10p064682 Quercus lobata
QL10p065807 Quercus lobata
RcHm_v2.0_Chr2g0084401 Rosa chinensis
RcHm_v2.0_Chr2g0155241 Rosa chinensis
Rhsim02G0088100 Rhododendron simsii
Rhsim06G0181600 Rhododendron simsii
Rhsim06G0182500 Rhododendron simsii
Rhsim09G0002300 Rhododendron simsii
Sabra07G0115200 Salix brachista
Sabra14G0131000 Salix brachista
SalBow6G2020 Salvia bowleyana
SalBow8G3644 Salvia bowleyana
SalBow8G4724 Salvia bowleyana
Sc13g0007480 Simmondsia chinensis
Sc20g0003050 Simmondsia chinensis
Sed0003930 Sechium edule
Sed0020665 Sechium edule
SEGI_19546 Sequoiadendron giganteum
SGA_v2.0_scaffold186G40149 Striga asiatica
SGA_v2.0_scaffold70G23603 Striga asiatica
SMO197G0061 Selaginella moellendorffii
SMO239G0003 Selaginella moellendorffii
Solyc07g056140.3 Solanum lycopersicum
Solyc08g015670.4 Solanum lycopersicum
Solyc12g011120.3 Solanum lycopersicum
Sopen07g029500 Solanum pennellii
Sopen08g005780 Solanum pennellii
Sopen12g006480 Solanum pennellii
Sp1g04460 Schrenkiella parvula
Sp2g18660 Schrenkiella parvula
Sp3g23080 Schrenkiella parvula
Sp4g07370 Schrenkiella parvula
SpUn0479_0010 Schrenkiella parvula
TAR365G0193 Trochodendron aralioides
TAR626G0639 Trochodendron aralioides
THA.LOC104800939 Tarenaya hassleriana
THA.LOC104808827 Tarenaya hassleriana
Thecc.01G201500 Theobroma cacao
Thecc.05G000900 Theobroma cacao
Thhalv10003993m.g Eutrema salsugineum
Thhalv10009542m.g Eutrema salsugineum
TPR.G1271 Trifolium pratense
TPR.G23129 Trifolium pratense
TWI15G0744 Tripterygium wilfordii
TWI36G1361 Tripterygium wilfordii
TWI75G1377 Tripterygium wilfordii
unitig_21.g20242 Utricularia gibba
unitig_21.g20243 Utricularia gibba
unitig_21.g20244 Utricularia gibba
unitig_22.g5746 Utricularia gibba
unitig_744.g24509 Utricularia gibba
unitig_744.g24510 Utricularia gibba
vmacro00727 Vaccinium macrocarpon
vmacro12038 Vaccinium macrocarpon
vmacro15717 Vaccinium macrocarpon
vmacro22935 Vaccinium macrocarpon
VMungo0647G1055 Vigna mungo
Zm00001eb042990 Zea mays
Zm00001eb097730 Zea mays
Zm00001eb176800 Zea mays

User provided reference genes

Program Settings