Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p21330 Brassica napus
Aa31LG5G8040 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.290 Anthoceros agrestis
Actinidia03090 Actinidia chinensis
Actinidia24135 Actinidia chinensis
Ah.01g003200 Amaranthus hybridus
Ah.04g156340 Amaranthus hybridus
AL4G22060 Arabidopsis lyrata
Aqoxy2G01739 Aquilegia oxysepala
Aqoxy7G00534_Aqoxy7G00536 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6GA0DJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IQP7TJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KSB81E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XALJ0Y Arachis hypogaea
AT2G28100 Arabidopsis thaliana
ATR0680G102 Amborella trichopoda
ATR0680G143 Amborella trichopoda
ATR0680G222 Amborella trichopoda
ATR0723G074 Amborella trichopoda
ATR0757G112 Amborella trichopoda
ATR0757G132 Amborella trichopoda
Atru.chr1.596 Acer truncatum
Atru.chr3.3539 Acer truncatum
AUR62014939 Chenopodium quinoa
AUR62016078 Chenopodium quinoa
AUR62021287 Chenopodium quinoa
AUR62029202 Chenopodium quinoa
BcaB06g28187 Brassica carinata
BcaC02g08208 Brassica carinata
BolC4t27251H Brassica oleracea
BraA04t17699Z Brassica rapa
C04p57250 Brassica napus
CAN.G1409.1 Capsicum annuum
CAN.G546.18 Capsicum annuum
CANSAT21G0797 Cannabis sativa
CANSAT21G1002 Cannabis sativa
CANSAT80G1262 Cannabis sativa
CANSAT80G1316 Cannabis sativa
CANSAT80G1879 Cannabis sativa
CARHR120860 Cardamine hirsuta
Carub.0004s0887 Capsella rubella
Ca_01373_v3 Cicer arietinum L.
Ca_10829_v3 Cicer arietinum L.
CBR_g16068 Chara braunii
CBR_g38724 Chara braunii
Cc01_g10480 Coffea canephora
Cc02_g03720 Coffea canephora
CDE10G0662 Ceratophyllum demersum
CDE10G0925 Ceratophyllum demersum
Cfa008245 Carpinus fangiana
Cfa010305 Carpinus fangiana
Ciclev10004832m.g Citrus clementina
Ciclev10028210m.g Citrus clementina
CiPaw.04G064200 Carya illinoinensis
CiPaw.13G124800 Carya illinoinensis
ClCG01G001290 Citrullus lanatus
ClCG02G021470 Citrullus lanatus
COL.COLO4_11063 Corchorus olitorius
COL.COLO4_11064 Corchorus olitorius
COL.COLO4_14206 Corchorus olitorius
Cpa.g.sc3.250 Carica papaya
Cpa.g.sc65.36 Carica papaya
CsaV3_5G001420 Cucumis sativus L.
CsaV3_6G014260 Cucumis sativus L.
CSS0021944 Camellia sinensis var. sinensis
CSS0026062 Camellia sinensis var. sinensis
CSS0041005 Camellia sinensis var. sinensis
CSS0045964 Camellia sinensis var. sinensis
DCAR_018138 Daucus carota
DCAR_018779 Daucus carota
Dinv28519 Davidia involucrata
Dinv29363 Davidia involucrata
Dinv29364 Davidia involucrata
Duzib084G0992 Durio zibethinus
Duzib168G0452 Durio zibethinus
Duzib205G1881 Durio zibethinus
ECA233G0707 Erigeron canadensis
ECA238G3373 Erigeron canadensis
EL10Ac3g05762 Beta vulgaris
EL10Ac9g22590 Beta vulgaris
Eucgr.A02861 Eucalyptus grandis
Eucgr.A02862 Eucalyptus grandis
Eucgr.J00367 Eucalyptus grandis
Eucgr.J00379 Eucalyptus grandis
FAN01G1192 Fragaria x ananassa
FAN01G1702 Fragaria x ananassa
FAN03G0123 Fragaria x ananassa
FAN03G0786 Fragaria x ananassa
FAN03G1532 Fragaria x ananassa
FAN03G2942 Fragaria x ananassa
FAN06G2835 Fragaria x ananassa
FAN06G3069 Fragaria x ananassa
FAN06G4221 Fragaria x ananassa
FAN10G1083 Fragaria x ananassa
FAN10G2838 Fragaria x ananassa
FAN16G1400 Fragaria x ananassa
FAN25G2647 Fragaria x ananassa
FvH4_3g30940 Fragaria vesca
FvH4_7g28480 Fragaria vesca
FvH4_7g28490 Fragaria vesca
Glyma.10G241800 Glycine max
Glyma.13G322800 Glycine max
Glyma.20G152400 Glycine max
Gohir.A08G200300 Gossypium hirsutum
Gohir.A12G263200 Gossypium hirsutum
Gohir.D08G217500 Gossypium hirsutum
Gohir.D12G263700 Gossypium hirsutum
Gorai.004G231200 Gossypium raimondii
Gorai.008G282700 Gossypium raimondii
GSVIVG01018468001 Vitis vinifera
GSVIVG01031495001 Vitis vinifera
HanXRQChr07g0206631 Helianthus annuus
HanXRQChr07g0206651 Helianthus annuus
HanXRQChr07g0206671 Helianthus annuus
HanXRQChr10g0313301 Helianthus annuus
Haze_13806 Corylus avellana
Haze_23730 Corylus avellana
Hma1.2p1_0051F.1_g029290 Hydrangea macrophylla
HPP92_006938 Vanilla planifolia
HPP92_020935 Vanilla planifolia
HPP92_020956 Vanilla planifolia
HPP92_022581 Vanilla planifolia
Hund01470 Selenicereus undatus
Hund04662 Selenicereus undatus
Lalb_Chr02g0140801 Lupinus albus
Lalb_Chr14g0374471 Lupinus albus
Lalb_Chr21g0304871 Lupinus albus
Lj1A986T55 Lonicera japonica
Lj2A1012T37 Lonicera japonica
Lj2A1013T24 Lonicera japonica
Lj3g0002991 Lotus japonicus
Lj5A395T42 Lonicera japonica
Lj5C389T7 Lonicera japonica
Lj5g0028001 Lotus japonicus
Lsat_1_v5_gn_2_129881 Lactuca sativa
Lsat_1_v5_gn_6_44060 Lactuca sativa
Manes.04G014700 Manihot esculenta
Manes.11G151202 Manihot esculenta
Manes.14G031700 Manihot esculenta
Mapoly0037s0106 Marchantia polymorpha
MBI04_g28557_MAGBIO Magnolia biondii
MBI19_g35849_MAGBIO Magnolia biondii
MD00G1032500 Malus domestica
MD01G1188500 Malus domestica
MD01G1188600 Malus domestica
Medtr1g102230 Medicago truncatula
Medtr2g095700 Medicago truncatula
Medtr2g095720 Medicago truncatula
MELO3C005806.2 Cucumis melo
MELO3C026905.2 Cucumis melo
Migut.D02281 Erythranthe guttata
Migut.F00410 Erythranthe guttata
MSTRG.8789 Avicennia marina
Nitab4.5_0000072g0120 Nicotiana tabacum
Nitab4.5_0000329g0260 Nicotiana tabacum
Nitab4.5_0006353g0010 Nicotiana tabacum
Nitab4.5_0011893g0010 Nicotiana tabacum
Nn6g34349 Nelumbo nucifera
Oeu018478.1 Olea europaea
Oeu029890.1 Olea europaea
Oeu039224.1 Olea europaea
Os04g0560400 Oryza sativa ssp. japonica
Os09g0520800 Oryza sativa ssp. japonica
Peaxi162Scf00192g00822 Petunia axillaris
Peaxi162Scf00892g00124 Petunia axillaris
PGR042G0934 Punica granatum
PGR119G2270 Punica granatum
PGSC0003DMG400019638 Solanum tuberosum
PGSC0003DMG400031031 Solanum tuberosum
Phvul.005G131200 Phaseolus vulgaris
Phvul.007G063900 Phaseolus vulgaris
Potri.009G006900 Populus trichocarpa
Potri.012G131400 Populus trichocarpa
Potri.015G133500 Populus trichocarpa
Pp3c3_30260 Physcomitrium patens
Prupe.2G285300 Prunus persica
Prupe.6G109300 Prunus persica
Psat5g281200 Pisum sativum
Psat6g203800 Pisum sativum
PSO339G6334 Papaver somniferum
PSO478G0710 Papaver somniferum
PSO478G4154 Papaver somniferum
PSO782G1007 Papaver somniferum
QL01p015626 Quercus lobata
QL12p039172 Quercus lobata
RcHm_v2.0_Chr1g0375771 Rosa chinensis
RcHm_v2.0_Chr1g0375821 Rosa chinensis
RcHm_v2.0_Chr1g0375841 Rosa chinensis
RcHm_v2.0_Chr1g0375871 Rosa chinensis
RcHm_v2.0_Chr5g0057471 Rosa chinensis
Rhsim09G0194300 Rhododendron simsii
Rhsim09G0194500 Rhododendron simsii
Rhsim13G0099400 Rhododendron simsii
Sabra09G0004000 Salix brachista
Sabra12G0098900 Salix brachista
SalBow3G4404 Salvia bowleyana
SalBow4G0266 Salvia bowleyana
SalBow4G1683 Salvia bowleyana
Sc19g0001800 Simmondsia chinensis
Sc21g0007230 Simmondsia chinensis
Sed0004628 Sechium edule
Sed0010109 Sechium edule
SEGI_00812 Sequoiadendron giganteum
SEGI_04257 Sequoiadendron giganteum
SEGI_14180 Sequoiadendron giganteum
SEGI_24300 Sequoiadendron giganteum
SEGI_32137 Sequoiadendron giganteum
SGA_v2.0_scaffold1625G54002 Striga asiatica
SGA_v2.0_scaffold263G45966 Striga asiatica
SGA_v2.0_scaffold2G01108 Striga asiatica
SMO083G0006 Selaginella moellendorffii
SMO083G0011 Selaginella moellendorffii
SMO111G0030 Selaginella moellendorffii
SMO121G0003 Selaginella moellendorffii
SMO140G0001 Selaginella moellendorffii
SMO140G0094 Selaginella moellendorffii
SMO140G0106 Selaginella moellendorffii
SMO140G0115 Selaginella moellendorffii
SMO200G0089 Selaginella moellendorffii
SMO282G0001 Selaginella moellendorffii
SMO338G0027 Selaginella moellendorffii
Solyc03g006980.4 Solanum lycopersicum
Solyc08g062280.2 Solanum lycopersicum
Solyc11g069010.2 Solanum lycopersicum
Sopen03g002980 Solanum pennellii
Sopen11g027720 Solanum pennellii
Sp4g10900 Schrenkiella parvula
TAR374G0057 Trochodendron aralioides
TAR375G0746 Trochodendron aralioides
TAR375G0825 Trochodendron aralioides
TAR633G0467 Trochodendron aralioides
THA.LOC104824841 Tarenaya hassleriana
THA.LOC104826383 Tarenaya hassleriana
Thecc.03G164400 Theobroma cacao
Thecc.09G349200 Theobroma cacao
Thecc.09G349400 Theobroma cacao
Thhalv10016468m.g Eutrema salsugineum
TPR.G11628 Trifolium pratense
TPR.G21693 Trifolium pratense
TPR.G26103 Trifolium pratense
TWI31G1393 Tripterygium wilfordii
TWI39G0998 Tripterygium wilfordii
TWI39G1160 Tripterygium wilfordii
unitig_0.g1500 Utricularia gibba
unitig_0.g1585 Utricularia gibba
vmacro03266 Vaccinium macrocarpon
vmacro09877 Vaccinium macrocarpon
vmacro09878 Vaccinium macrocarpon
VMungo0720G2896 Vigna mungo
VMungo1080G0537 Vigna mungo
Zm00001eb074120 Zea mays
Zm00001eb103040 Zea mays
Zm00001eb318780 Zea mays

User provided reference genes

Program Settings