Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00180 Brassica napus
A03p27390 Brassica napus
Aa31LG6G16220 Aethionema arabicum
Aa31LG7G15170 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3968 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4898 Anthoceros agrestis
Actinidia11761 Actinidia chinensis
Ah.01g006130 Amaranthus hybridus
Ah.01g018960 Amaranthus hybridus
AL4G10510 Arabidopsis lyrata
AL7G10970 Arabidopsis lyrata
Aqoxy5G01502 Aquilegia oxysepala
Aqoxy5G01503 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1DJ7XZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IPZ39I Arachis hypogaea
AT2G21340 Arabidopsis thaliana
AT4G39030 Arabidopsis thaliana
ATR0661G040 Amborella trichopoda
ATR0661G387 Amborella trichopoda
Atru.chr5.3117 Acer truncatum
Atru.chr5.3118 Acer truncatum
Atru.ctg942.29 Acer truncatum
Atru.ctg942.30 Acer truncatum
AUR62010407 Chenopodium quinoa
AUR62010408 Chenopodium quinoa
AUR62010410 Chenopodium quinoa
AUR62016806 Chenopodium quinoa
AUR62016809 Chenopodium quinoa
BcaB01g02967 Brassica carinata
BcaC01g04863 Brassica carinata
BcaNung01287 Brassica carinata
BcaNung06383 Brassica carinata
BcaNung06993 Brassica carinata
BcaNung07220 Brassica carinata
BolC1t00031H Brassica oleracea
BolC3t15629H Brassica oleracea
BolC8t51723H Brassica oleracea
BraA01t00024Z Brassica rapa
BraA03t11950Z Brassica rapa
BraA09t41219Z Brassica rapa
C01p00260 Brassica napus
C03p33000 Brassica napus
C08p41610 Brassica napus
CAN.G1849.1 Capsicum annuum
CANSAT21G1938 Cannabis sativa
CARHR112220 Cardamine hirsuta
CARHR247720 Cardamine hirsuta
Carub.0004s0038 Capsella rubella
Carub.0007s0090 Capsella rubella
Ca_20924_v3 Cicer arietinum L.
Ca_20926_v3 Cicer arietinum L.
CBR_g3327 Chara braunii
Cc02_g17020 Coffea canephora
Cc09_g09420 Coffea canephora
CDE08G0569 Ceratophyllum demersum
Cfa005080 Carpinus fangiana
Cfa005082 Carpinus fangiana
Cfa005092 Carpinus fangiana
Ciclev10028123m.g Citrus clementina
Ciclev10028133m.g Citrus clementina
CiPaw.05G072300 Carya illinoinensis
CiPaw.05G072400 Carya illinoinensis
CiPaw.05G072600 Carya illinoinensis
CiPaw.06G130500 Carya illinoinensis
ClCG11G003980 Citrullus lanatus
COL.COLO4_26030 Corchorus olitorius
Cpa.g.sc150.35 Carica papaya
Cre03.g177750 Chlamydomonas reinhardtii
CsaV3_2G015190 Cucumis sativus L.
CsaV3_2G015200 Cucumis sativus L.
CSS0005136 Camellia sinensis var. sinensis
CSS0009065 Camellia sinensis var. sinensis
DCAR_003646 Daucus carota
DCAR_003677 Daucus carota
DCAR_028948 Daucus carota
Dinv23469 Davidia involucrata
Dinv26289 Davidia involucrata
Duzib132G0045 Durio zibethinus
Duzib248G0876 Durio zibethinus
ECA246G1902 Erigeron canadensis
EL10Ac9g21656 Beta vulgaris
Eucgr.G01719 Eucalyptus grandis
Eucgr.I01313 Eucalyptus grandis
Eucgr.I01314 Eucalyptus grandis
Eucgr.L03433 Eucalyptus grandis
Eucgr.L03585 Eucalyptus grandis
FAN15G1473 Fragaria x ananassa
FAN20G2493 Fragaria x ananassa
FAN24G1553 Fragaria x ananassa
FAN27G1615 Fragaria x ananassa
FvH4_1g25951 Fragaria vesca
FvH4_2g10111 Fragaria vesca
FvH4_2g10120 Fragaria vesca
Glyma.11G112100 Glycine max
Glyma.11G112200 Glycine max
Glyma.12G038300 Glycine max
Gohir.A03G198100 Gossypium hirsutum
Gohir.A03G198200 Gossypium hirsutum
Gohir.A03G198300 Gossypium hirsutum
Gohir.D02G219400 Gossypium hirsutum
Gohir.D02G219500 Gossypium hirsutum
Gohir.D02G219600 Gossypium hirsutum
Gorai.005G247400 Gossypium raimondii
Gorai.005G247500 Gossypium raimondii
Gorai.005G247600 Gossypium raimondii
GSVIVG01024198001 Vitis vinifera
GSVIVG01024199001 Vitis vinifera
HanXRQChr11g0320661 Helianthus annuus
HanXRQChr15g0479111 Helianthus annuus
HanXRQChr16g0511371 Helianthus annuus
HanXRQChr17g0543631 Helianthus annuus
Haze_02273 Corylus avellana
Haze_02279 Corylus avellana
Haze_02299 Corylus avellana
Hma1.2p1_0066F.1_g035860 Hydrangea macrophylla
Hma1.2p1_0066F.1_g035870 Hydrangea macrophylla
HPP92_012973 Vanilla planifolia
Hund00224 Selenicereus undatus
Hund06270 Selenicereus undatus
Lalb_Chr01g0002211 Lupinus albus
Lalb_Chr19g0138911 Lupinus albus
Lj3g0019680 Lotus japonicus
Lj3g0027159 Lotus japonicus
Lj3g0028227 Lotus japonicus
Lj5A190G58 Lonicera japonica
Lj5C190T9 Lonicera japonica
Lj9A381T47 Lonicera japonica
Lj9A381T48 Lonicera japonica
Lsat_1_v5_gn_3_43900 Lactuca sativa
Lsat_1_v5_gn_4_76120 Lactuca sativa
Lsat_1_v5_gn_6_63160 Lactuca sativa
Lsat_1_v5_gn_8_154681 Lactuca sativa
Manes.04G084700 Manihot esculenta
Manes.11G091900 Manihot esculenta
Manes.11G092000 Manihot esculenta
Mapoly0005s0170 Marchantia polymorpha
MBI01_g08782_MAGBIO Magnolia biondii
MCO02G334 Micromonas commoda
MCO05G329 Micromonas commoda
MCO09G669 Micromonas commoda
MCO10G292 Micromonas commoda
MD05G1056900 Malus domestica
MD10G1065100 Malus domestica
Medtr4g071370 Medicago truncatula
Medtr4g071390 Medicago truncatula
Medtr4g071420 Medicago truncatula
Medtr4g071445 Medicago truncatula
Medtr4g071465 Medicago truncatula
MELO3C023344.2 Cucumis melo
MELO3C023345.2 Cucumis melo
Migut.B00186 Erythranthe guttata
Migut.B00187 Erythranthe guttata
MSTRG.16841 Avicennia marina
MSTRG.20053 Avicennia marina
Nitab4.5_0001317g0100 Nicotiana tabacum
Nitab4.5_0002723g0080 Nicotiana tabacum
Nitab4.5_0005128g0020 Nicotiana tabacum
Nitab4.5_0010034g0010 Nicotiana tabacum
Nn5g29199 Nelumbo nucifera
Oeu004813.1 Olea europaea
Os02g0122200 Oryza sativa ssp. japonica
Peaxi162Scf00003g00611 Petunia axillaris
Peaxi162Scf00016g00147 Petunia axillaris
PGR042G0300 Punica granatum
PGR142G1217 Punica granatum
PGR142G2568 Punica granatum
PGR142G4152 Punica granatum
PGSC0003DMG400003411 Solanum tuberosum
PGSC0003DMG401003112 Solanum tuberosum
PGSC0003DMG402003112 Solanum tuberosum
Phvul.011G040200 Phaseolus vulgaris
Phvul.011G040300 Phaseolus vulgaris
Potri.009G122600 Populus trichocarpa
Potri.009G122900 Populus trichocarpa
Pp3c10_7340 Physcomitrium patens
Pp3c13_16630 Physcomitrium patens
Pp3c19_2790 Physcomitrium patens
Pp3c3_21140 Physcomitrium patens
Pp3c4_8080 Physcomitrium patens
Pp3c4_8090 Physcomitrium patens
PRCOL_00004759 Prasinoderma coloniale
PRCOL_00005266 Prasinoderma coloniale
PRCOL_00005334 Prasinoderma coloniale
PRCOL_00006368 Prasinoderma coloniale
Prupe.8G087100 Prunus persica
Prupe.8G087300 Prunus persica
Psat7g139440 Pisum sativum
Psat7g228640 Pisum sativum
Psat7g228760 Pisum sativum
PSO170G5771 Papaver somniferum
PSO210G7089 Papaver somniferum
QL11p045799 Quercus lobata
QL11p045811 Quercus lobata
QL11p045824 Quercus lobata
RcHm_v2.0_Chr6g0267081 Rosa chinensis
RcHm_v2.0_Chr6g0267141 Rosa chinensis
RcHm_v2.0_Chr6g0267191 Rosa chinensis
Rhsim05G0068800 Rhododendron simsii
Rhsim11G0182400 Rhododendron simsii
Sabra04G0107900 Salix brachista
Sabra04G0108000 Salix brachista
Sabra09G0094400 Salix brachista
Sabra09G0094500 Salix brachista
SalBow6G5861 Salvia bowleyana
Sc08g0000790 Simmondsia chinensis
Sc18g0005320 Simmondsia chinensis
Sed0012872 Sechium edule
Sed0018473 Sechium edule
Sed0027400 Sechium edule
SEGI_05866 Sequoiadendron giganteum
SEGI_14307 Sequoiadendron giganteum
SEGI_16236 Sequoiadendron giganteum
SEGI_20875 Sequoiadendron giganteum
SEGI_24714 Sequoiadendron giganteum
SEGI_30973 Sequoiadendron giganteum
SEGI_37498 Sequoiadendron giganteum
SEGI_41416 Sequoiadendron giganteum
SGA_v2.0_scaffold32G13207 Striga asiatica
SHI05593 Sapria himalayana
SMO117G0297 Selaginella moellendorffii
SMO173G0053 Selaginella moellendorffii
SMO200G0231 Selaginella moellendorffii
SMO361G0157 Selaginella moellendorffii
SMO361G0509 Selaginella moellendorffii
SMO367G0202 Selaginella moellendorffii
Solyc01g110280.3 Solanum lycopersicum
Solyc10g054100.3 Solanum lycopersicum
Sopen01g052430 Solanum pennellii
Sopen10g023960 Solanum pennellii
Sp4g00520 Schrenkiella parvula
Sp7g36800 Schrenkiella parvula
TAR376G0091 Trochodendron aralioides
THA.LOC104807760 Tarenaya hassleriana
THA.LOC104807762 Tarenaya hassleriana
THA.LOC104807764 Tarenaya hassleriana
Thecc.02G077100 Theobroma cacao
Thecc.02G077300 Theobroma cacao
Thecc.02G077400 Theobroma cacao
Thecc.02G077500 Theobroma cacao
Thhalv10000106m.g Eutrema salsugineum
Thhalv10024859m.g Eutrema salsugineum
TPR.G16220 Trifolium pratense
TPR.G16232 Trifolium pratense
TPR.G16237 Trifolium pratense
TPR.G16239 Trifolium pratense
TPR.G16244 Trifolium pratense
TWI31G0190 Tripterygium wilfordii
TWI31G0495 Tripterygium wilfordii
unitig_0.g52 Utricularia gibba
unitig_32.g11061 Utricularia gibba
vmacro02063 Vaccinium macrocarpon
VMungo1127G1375 Vigna mungo
Zm00001eb230490 Zea mays

User provided reference genes

Program Settings