Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p24330 Brassica napus
A06p48050 Brassica napus
A09p43160 Brassica napus
Aa31LG4G18440 Aethionema arabicum
Aa31LG9G13200 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4534 Anthoceros agrestis
Actinidia04649 Actinidia chinensis
Actinidia07397 Actinidia chinensis
Actinidia12005 Actinidia chinensis
Actinidia14370 Actinidia chinensis
Actinidia16447 Actinidia chinensis
Actinidia21240 Actinidia chinensis
Actinidia21241 Actinidia chinensis
Ah.03g146240 Amaranthus hybridus
AL5G30170 Arabidopsis lyrata
AL5G42680 Arabidopsis lyrata
AL8G17550 Arabidopsis lyrata
Aqoxy6G02811 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0NN33J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.44PEWG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TV29LQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W0U9UI Arachis hypogaea
AT3G50050 Arabidopsis thaliana
AT5G43100 Arabidopsis thaliana
ATR0041G013 Amborella trichopoda
ATR0661G068 Amborella trichopoda
Atru.chr13.793 Acer truncatum
Atru.chr13.795 Acer truncatum
Atru.chr13.796 Acer truncatum
Atru.chr5.709 Acer truncatum
AUR62003955 Chenopodium quinoa
AUR62013791 Chenopodium quinoa
AUR62023364 Chenopodium quinoa
AUR62038268 Chenopodium quinoa
BcaB01g00643 Brassica carinata
BcaB05g23183 Brassica carinata
BcaC02g10825 Brassica carinata
BcaC06g31725 Brassica carinata
BcaC07g39470 Brassica carinata
BcaC09g49997 Brassica carinata
BolC1t02970H Brassica oleracea
BolC4t23978H Brassica oleracea
BolC8t50133H Brassica oleracea
BraA01t02346Z Brassica rapa
BraA06t27675Z Brassica rapa
BraA09t39785Z Brassica rapa
C01p30260 Brassica napus
C04p24740 Brassica napus
C08p25140 Brassica napus
CAN.G1.33 Capsicum annuum
CAN.G1134.24 Capsicum annuum
CAN.G1302.1 Capsicum annuum
CAN.G344.1 Capsicum annuum
CAN.G469.1 Capsicum annuum
CAN.G755.14 Capsicum annuum
CANSAT01G0108 Cannabis sativa
CANSAT25G1475 Cannabis sativa
CARHR159120 Cardamine hirsuta
CARHR180880 Cardamine hirsuta
Carub.0005s1640 Capsella rubella
Carub.0008s0561 Capsella rubella
Ca_13936_v3 Cicer arietinum L.
Ca_24715_v3 Cicer arietinum L.
Ca_24730_v3 Cicer arietinum L.
CBR_g24272 Chara braunii
CBR_g5596 Chara braunii
Cc02_g33770 Coffea canephora
CDE04G1849 Ceratophyllum demersum
CDE04G1999 Ceratophyllum demersum
CDE06G2017 Ceratophyllum demersum
Cfa004084 Carpinus fangiana
Cfa017883 Carpinus fangiana
Ciclev10000565m.g Citrus clementina
Ciclev10025144m.g Citrus clementina
CiPaw.01G008700 Carya illinoinensis
CiPaw.16G033300 Carya illinoinensis
ClCG02G012480 Citrullus lanatus
ClCG05G020390 Citrullus lanatus
COL.COLO4_11513 Corchorus olitorius
COL.COLO4_28551 Corchorus olitorius
Cpa.g.sc21.122 Carica papaya
Cpa.g.sc21.123 Carica papaya
Cpa.g.sc21.124 Carica papaya
Cpa.g.sc6.67 Carica papaya
Cpa.g.sc6.68 Carica papaya
Cre01.g026500 Chlamydomonas reinhardtii
Cre01.g051950 Chlamydomonas reinhardtii
CsaV3_2G016610 Cucumis sativus L.
CsaV3_4G034870 Cucumis sativus L.
CSS0019570 Camellia sinensis var. sinensis
CSS0043743 Camellia sinensis var. sinensis
CSS0048594 Camellia sinensis var. sinensis
DCAR_010842 Daucus carota
DCAR_021472 Daucus carota
DCAR_025770 Daucus carota
Dinv26888 Davidia involucrata
Dinv30054 Davidia involucrata
Dinv44990 Davidia involucrata
Duzib041G0143 Durio zibethinus
Duzib093G0966 Durio zibethinus
Duzib147G0455 Durio zibethinus
ECA232G0206 Erigeron canadensis
ECA238G0959 Erigeron canadensis
EL10Ac6g15672 Beta vulgaris
Eucgr.F02270 Eucalyptus grandis
Eucgr.H02267 Eucalyptus grandis
FAN15G2068 Fragaria x ananassa
FAN19G1294 Fragaria x ananassa
FAN23G0789 Fragaria x ananassa
FvH4_1g17040 Fragaria vesca
FvH4_2g33420 Fragaria vesca
Glyma.01G190800 Glycine max
Glyma.05G101900 Glycine max
Glyma.11G051400 Glycine max
Glyma.17G165000 Glycine max
Gohir.A01G121200 Gossypium hirsutum
Gohir.A02G154200 Gossypium hirsutum
Gohir.A05G207400 Gossypium hirsutum
Gohir.A11G048000 Gossypium hirsutum
Gohir.A11G218800 Gossypium hirsutum
Gohir.D01G108700 Gossypium hirsutum
Gohir.D03G026300 Gossypium hirsutum
Gohir.D05G210800 Gossypium hirsutum
Gohir.D11G051600 Gossypium hirsutum
Gohir.D11G204900 Gossypium hirsutum
Gorai.002G132900 Gossypium raimondii
Gorai.003G027900 Gossypium raimondii
Gorai.007G056000 Gossypium raimondii
Gorai.007G219800 Gossypium raimondii
Gorai.009G217300 Gossypium raimondii
GSVIVG01000170001 Vitis vinifera
GSVIVG01009385001 Vitis vinifera
HanXRQChr11g0322521 Helianthus annuus
HanXRQChr12g0373311 Helianthus annuus
HanXRQChr14g0439221 Helianthus annuus
HanXRQChr14g0449561 Helianthus annuus
Haze_15330 Corylus avellana
Haze_18283 Corylus avellana
Hma1.2p1_1060F.1_g253150 Hydrangea macrophylla
HPP92_020479 Vanilla planifolia
HPP92_020691 Vanilla planifolia
Hund13923 Selenicereus undatus
Hund16374 Selenicereus undatus
Hund29370 Selenicereus undatus
Hund29373 Selenicereus undatus
Lalb_Chr05g0213481 Lupinus albus
Lalb_Chr16g0389051 Lupinus albus
Lj2g0027657 Lotus japonicus
Lj4g0025121 Lotus japonicus
Lj7C86G3 Lonicera japonica
Lsat_1_v5_gn_2_84581 Lactuca sativa
Lsat_1_v5_gn_2_84641 Lactuca sativa
Lsat_1_v5_gn_4_162321 Lactuca sativa
Manes.05G179700 Manihot esculenta
Manes.13G115650 Manihot esculenta
Mapoly0014s0171 Marchantia polymorpha
MBI16_g25573_MAGBIO Magnolia biondii
MCO16G419 Micromonas commoda
MD02G1180600 Malus domestica
MD08G1089200 Malus domestica
MD08G1089400 Malus domestica
MD15G1074000 Malus domestica
MD15G1291500 Malus domestica
Medtr4g095270 Medicago truncatula
Medtr5g016260 Medicago truncatula
MELO3C016801.2 Cucumis melo
MELO3C020869.2 Cucumis melo
Migut.N01933 Erythranthe guttata
Migut.O00597 Erythranthe guttata
MSTRG.28016 Avicennia marina
Nitab4.5_0000011g0340 Nicotiana tabacum
Nitab4.5_0000125g0290 Nicotiana tabacum
Nitab4.5_0001643g0090 Nicotiana tabacum
Nitab4.5_0003372g0010 Nicotiana tabacum
Nitab4.5_0004271g0030 Nicotiana tabacum
Nitab4.5_0005907g0040 Nicotiana tabacum
Nitab4.5_0007683g0010 Nicotiana tabacum
Nn1g04648 Nelumbo nucifera
Nn5g30476 Nelumbo nucifera
Oeu012090.2 Olea europaea
Oeu016083.1 Olea europaea
Oeu057681.1 Olea europaea
Os07g0592200 Oryza sativa ssp. japonica
Peaxi162Scf00071g00738 Petunia axillaris
Peaxi162Scf00434g00017 Petunia axillaris
Peaxi162Scf00532g00056 Petunia axillaris
PGR031G0512 Punica granatum
PGR102G1534 Punica granatum
PGSC0003DMG400010857 Solanum tuberosum
PGSC0003DMG400028603 Solanum tuberosum
PGSC0003DMG400038869 Solanum tuberosum
PGSC0003DMG400040946 Solanum tuberosum
Phvul.002G014200 Phaseolus vulgaris
Phvul.003G238400 Phaseolus vulgaris
Potri.005G144600 Populus trichocarpa
Potri.014G020200 Populus trichocarpa
Pp3c1_6950 Physcomitrium patens
Pp3c7_25370 Physcomitrium patens
Pp3c9_490 Physcomitrium patens
PRCOL_00001056 Prasinoderma coloniale
Prupe.1G426800 Prunus persica
Prupe.6G225700 Prunus persica
Psat2g169520 Pisum sativum
Psat4g082960 Pisum sativum
PSO541G6384 Papaver somniferum
PSO675G7600 Papaver somniferum
QL02p002614 Quercus lobata
RcHm_v2.0_Chr2g0107201 Rosa chinensis
RcHm_v2.0_Chr3g0465831 Rosa chinensis
RcHm_v2.0_Chr6g0309111 Rosa chinensis
RcHm_v2.0_Chr7g0211461 Rosa chinensis
Rhsim08G0096600 Rhododendron simsii
Rhsim10G0105000 Rhododendron simsii
Sabra05G0115400 Salix brachista
Sabra14G0013200 Salix brachista
SalBow3G2200 Salvia bowleyana
Sc02g0007700 Simmondsia chinensis
Sc03g0001940 Simmondsia chinensis
Sed0017662 Sechium edule
Sed0018619 Sechium edule
SEGI_23427 Sequoiadendron giganteum
SEGI_24914 Sequoiadendron giganteum
SGA_v2.0_scaffold196G40967 Striga asiatica
SGA_v2.0_scaffold43G16264 Striga asiatica
SHI23457 Sapria himalayana
SMO119G0476 Selaginella moellendorffii
Solyc01g098710.3 Solanum lycopersicum
Solyc08g029230.4 Solanum lycopersicum
Solyc10g044740.2 Solanum lycopersicum
Sopen00g011600 Solanum pennellii
Sopen01g042250 Solanum pennellii
Sopen08g010170 Solanum pennellii
Sopen10g013410 Solanum pennellii
Sp2g07890 Schrenkiella parvula
Sp5g12060 Schrenkiella parvula
TAR381G0536 Trochodendron aralioides
TAR625G0615 Trochodendron aralioides
THA.LOC104820506 Tarenaya hassleriana
THA.LOC104827477 Tarenaya hassleriana
Thecc.01G066700 Theobroma cacao
Thecc.08G093300 Theobroma cacao
Thhalv10003167m.g Eutrema salsugineum
Thhalv10010198m.g Eutrema salsugineum
TPR.G23872 Trifolium pratense
TPR.G26899 Trifolium pratense
TWI12G0157 Tripterygium wilfordii
TWI56G0077 Tripterygium wilfordii
unitig_26.g9501 Utricularia gibba
unitig_26.g9502 Utricularia gibba
vmacro05231 Vaccinium macrocarpon
vmacro17981 Vaccinium macrocarpon
VMungo0251G3763 Vigna mungo
VMungo1215G3154 Vigna mungo
Zm00001eb108310 Zea mays
Zm00001eb326360 Zea mays

User provided reference genes

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