Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p04690 Brassica napus
A07p32900 Brassica napus
Aa31LG10G9790 Aethionema arabicum
Aa31LG2G2560 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3771 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_369.561 Anthoceros agrestis
Actinidia02980 Actinidia chinensis
Actinidia34345 Actinidia chinensis
Actinidia34704 Actinidia chinensis
Ah.06g195130 Amaranthus hybridus
Ah.16g107550 Amaranthus hybridus
AL2G22550 Arabidopsis lyrata
AL5G36400 Arabidopsis lyrata
Aqoxy1G01860 Aquilegia oxysepala
Aqoxy2G01996 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7DV1VQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SN56KM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y8RRZC Arachis hypogaea
AT1G65590 Arabidopsis thaliana
AT3G55260 Arabidopsis thaliana
ATR0743G152 Amborella trichopoda
ATR0751G109 Amborella trichopoda
Atru.chr10.129 Acer truncatum
Atru.chr10.130 Acer truncatum
Atru.chr10.132 Acer truncatum
Atru.chr12.561 Acer truncatum
AUR62000255 Chenopodium quinoa
AUR62006602 Chenopodium quinoa
AUR62022524 Chenopodium quinoa
AUR62022525 Chenopodium quinoa
AUR62035946 Chenopodium quinoa
BcaB02g08435 Brassica carinata
BcaB03g15328 Brassica carinata
BcaC02g09738 Brassica carinata
BcaC09g51283 Brassica carinata
BolC4t25281H Brassica oleracea
BolC6t39005H Brassica oleracea
BraA04t16181Z Brassica rapa
BraA07t30916Z Brassica rapa
C01p14840 Brassica napus
C04p37050 Brassica napus
C06p39120 Brassica napus
CAN.G1339.8 Capsicum annuum
CAN.G691.21 Capsicum annuum
CANSAT56G1047 Cannabis sativa
CANSAT56G2593 Cannabis sativa
CANSAT64G1883 Cannabis sativa
CARHR057340 Cardamine hirsuta
CARHR165260 Cardamine hirsuta
Carub.0002s1142 Capsella rubella
Carub.0005s2192 Capsella rubella
Ca_07180_v3 Cicer arietinum L.
Ca_11301_v3 Cicer arietinum L.
Ca_29879_v3 Cicer arietinum L.
CBR_g32276 Chara braunii
CBR_g32277 Chara braunii
Cc00_g25060 Coffea canephora
Cc02_g08470 Coffea canephora
Cc03_g08320 Coffea canephora
CDE07G1781 Ceratophyllum demersum
CDE11G1152 Ceratophyllum demersum
Cfa001539 Carpinus fangiana
Cfa002310 Carpinus fangiana
Ciclev10014808m.g Citrus clementina
Ciclev10031139m.g Citrus clementina
CiPaw.02G180200 Carya illinoinensis
CiPaw.04G180500 Carya illinoinensis
ClCG02G013440 Citrullus lanatus
ClCG11G011060 Citrullus lanatus
COL.COLO4_10922 Corchorus olitorius
COL.COLO4_22777 Corchorus olitorius
COL.COLO4_22779 Corchorus olitorius
Cpa.g.c46066 Carica papaya
Cpa.g.sc1696.1 Carica papaya
Cpa.g.sc88.35 Carica papaya
Cpa.g.sc88.36 Carica papaya
Cre11.g467779 Chlamydomonas reinhardtii
CsaV3_2G009420 Cucumis sativus L.
CsaV3_5G006710 Cucumis sativus L.
CSS0000600 Camellia sinensis var. sinensis
CSS0003036 Camellia sinensis var. sinensis
CSS0030056 Camellia sinensis var. sinensis
DCAR_015228 Daucus carota
DCAR_023905 Daucus carota
Dinv17156 Davidia involucrata
Dinv25962 Davidia involucrata
Duzib128G0978 Durio zibethinus
Duzib128G1151 Durio zibethinus
Duzib128G1493 Durio zibethinus
ECA232G1166 Erigeron canadensis
EL10Ac2g03457 Beta vulgaris
EL10Ac4g10043 Beta vulgaris
Eucgr.G02896 Eucalyptus grandis
Eucgr.L01476 Eucalyptus grandis
FAN01G0978 Fragaria x ananassa
FAN03G1509 Fragaria x ananassa
FAN06G0368 Fragaria x ananassa
FAN10G2236 Fragaria x ananassa
FAN14G5176 Fragaria x ananassa
FvH4_6g16400 Fragaria vesca
FvH4_7g21240 Fragaria vesca
Glyma.02G095200 Glycine max
Glyma.10G290900 Glycine max
Glyma.18G286200 Glycine max
Glyma.20G240000 Glycine max
Gohir.A01G123900 Gossypium hirsutum
Gohir.A05G351400 Gossypium hirsutum
Gohir.A10G211800 Gossypium hirsutum
Gohir.D01G111601 Gossypium hirsutum
Gohir.D04G061300 Gossypium hirsutum
Gohir.D10G219800 Gossypium hirsutum
Gorai.002G136400 Gossypium raimondii
Gorai.011G246500 Gossypium raimondii
Gorai.012G068200 Gossypium raimondii
GSVIVG01004010001 Vitis vinifera
GSVIVG01006264001 Vitis vinifera
GSVIVG01006728001 Vitis vinifera
GSVIVG01016639001 Vitis vinifera
HanXRQChr05g0152141 Helianthus annuus
HanXRQChr05g0152151 Helianthus annuus
HanXRQChr09g0247691 Helianthus annuus
HanXRQChr14g0454971 Helianthus annuus
Haze_16995 Corylus avellana
Haze_24515 Corylus avellana
Hma1.2p1_0207F.1_g087720 Hydrangea macrophylla
Hma1.2p1_1218F.1_g267650 Hydrangea macrophylla
HPP92_001424 Vanilla planifolia
HPP92_001427 Vanilla planifolia
HPP92_011711 Vanilla planifolia
Hund07393 Selenicereus undatus
Lalb_Chr10g0091891 Lupinus albus
Lalb_Chr21g0307331 Lupinus albus
Lj1A640T53 Lonicera japonica
Lj1A640T54 Lonicera japonica
Lj1C573G6 Lonicera japonica
Lj1C640G1 Lonicera japonica
Lj1C648T6 Lonicera japonica
Lj1C931G7 Lonicera japonica
Lj1g0006572 Lotus japonicus
Lj5g0009511 Lotus japonicus
Lsat_1_v5_gn_2_108461 Lactuca sativa
Lsat_1_v5_gn_9_66280 Lactuca sativa
Manes.10G037700 Manihot esculenta
Manes.12G000500 Manihot esculenta
Mapoly0053s0009 Marchantia polymorpha
MBI02_g32398_MAGBIO Magnolia biondii
MD01G1120700 Malus domestica
MD07G1190100 Malus domestica
Medtr1g115475 Medicago truncatula
Medtr7g023060 Medicago truncatula
MELO3C008768.2 Cucumis melo
MELO3C023829.2 Cucumis melo
Migut.F00789 Erythranthe guttata
Migut.F02077 Erythranthe guttata
MSTRG.12661 Avicennia marina
MSTRG.9233 Avicennia marina
Nitab4.5_0001653g0030 Nicotiana tabacum
Nitab4.5_0001677g0100 Nicotiana tabacum
Nitab4.5_0005184g0020 Nicotiana tabacum
Nitab4.5_0008833g0020 Nicotiana tabacum
Nn1g00013 Nelumbo nucifera
Nn1g09451 Nelumbo nucifera
Nn1g09497 Nelumbo nucifera
Nn2g10496 Nelumbo nucifera
Nn2g14582 Nelumbo nucifera
Nn3g21842 Nelumbo nucifera
Nn7g37464 Nelumbo nucifera
Oeu001227.1 Olea europaea
Oeu033245.1 Olea europaea
Oeu034727.1 Olea europaea
Oeu047493.1 Olea europaea
Os01g0891000 Oryza sativa ssp. japonica
Os05g0115900 Oryza sativa ssp. japonica
Os05g0415700 Oryza sativa ssp. japonica
Peaxi162Scf00015g02223 Petunia axillaris
Peaxi162Scf29894g00007 Petunia axillaris
PGR142G2455 Punica granatum
PGSC0003DMG400016240 Solanum tuberosum
Phvul.007G010100 Phaseolus vulgaris
Phvul.008G015400 Phaseolus vulgaris
Potri.008G049801 Populus trichocarpa
Potri.008G079400 Populus trichocarpa
Potri.010G211000 Populus trichocarpa
Pp3c12_14920 Physcomitrium patens
Prupe.2G227600 Prunus persica
Prupe.2G228000 Prunus persica
Psat3g185000 Pisum sativum
Psat6g237080 Pisum sativum
Psat6g237280 Pisum sativum
PSO675G5555 Papaver somniferum
PSO732G0499 Papaver somniferum
PSO732G0537 Papaver somniferum
QL01p051842 Quercus lobata
QL01p051860 Quercus lobata
QL08p058007 Quercus lobata
RcHm_v2.0_Chr1g0365681 Rosa chinensis
Rhsim09G0127900 Rhododendron simsii
RhsimUnG0038100 Rhododendron simsii
RhsimUnG0038300 Rhododendron simsii
RhsimUnG0096900 Rhododendron simsii
RhsimUnG0108400 Rhododendron simsii
Sabra08G0036100 Salix brachista
Sabra08G0059100 Salix brachista
Sabra10G0163100 Salix brachista
SalBow1G2358 Salvia bowleyana
SalBow1G3071 Salvia bowleyana
SalBow1G6620 Salvia bowleyana
SalBow3G4415 Salvia bowleyana
Sc06g0001920 Simmondsia chinensis
Sc16g0010750 Simmondsia chinensis
Sed0004302 Sechium edule
Sed0007647 Sechium edule
Sed0014678 Sechium edule
Sed0017377 Sechium edule
SEGI_03373 Sequoiadendron giganteum
SEGI_20989 Sequoiadendron giganteum
SEGI_23183 Sequoiadendron giganteum
SEGI_33015 Sequoiadendron giganteum
SGA_v2.0_scaffold322G48631 Striga asiatica
SMO232G0030 Selaginella moellendorffii
SMO232G0036 Selaginella moellendorffii
SMO232G0042 Selaginella moellendorffii
SMO232G0097 Selaginella moellendorffii
SMO232G0137 Selaginella moellendorffii
SMO239G0002 Selaginella moellendorffii
SMO241G0007 Selaginella moellendorffii
SMO241G0025 Selaginella moellendorffii
Solyc05g054710.3 Solanum lycopersicum
Solyc11g008810.2 Solanum lycopersicum
Sopen05g033170 Solanum pennellii
Sopen05g033180 Solanum pennellii
Sopen11g004590 Solanum pennellii
Sp5g07200 Schrenkiella parvula
Sp5g20510 Schrenkiella parvula
TAR369G0154 Trochodendron aralioides
TAR636G2423 Trochodendron aralioides
TAR654G0003 Trochodendron aralioides
THA.LOC104805676 Tarenaya hassleriana
THA.LOC104810013 Tarenaya hassleriana
Thecc.05G131200 Theobroma cacao
Thecc.10G057600 Theobroma cacao
Thhalv10010264m.g Eutrema salsugineum
Thhalv10018379m.g Eutrema salsugineum
TPR.G14012 Trifolium pratense
TPR.G15501 Trifolium pratense
TWI15G1234 Tripterygium wilfordii
TWI18G1160 Tripterygium wilfordii
TWI53G1043 Tripterygium wilfordii
unitig_0.g2811 Utricularia gibba
vmacro07143 Vaccinium macrocarpon
vmacro10421 Vaccinium macrocarpon
VMungo0720G3180 Vigna mungo
VMungo1383G2086 Vigna mungo
Zm00001eb266300 Zea mays
Zm00001eb288150 Zea mays
Zm00001eb365840 Zea mays

User provided reference genes

Program Settings