Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p39910 Brassica napus
A09p54420 Brassica napus
Aa31LG10G16370 Aethionema arabicum
Aa31LG7G8600 Aethionema arabicum
Actinidia02637 Actinidia chinensis
Actinidia32298 Actinidia chinensis
Ah.06g194230 Amaranthus hybridus
Ah.11g049280 Amaranthus hybridus
Ah.16g102020 Amaranthus hybridus
AL1G39240 Arabidopsis lyrata
AL5G45290 Arabidopsis lyrata
Aqoxy2G03251 Aquilegia oxysepala
Aqoxy3G03617 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9U1QHR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M7NPSI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZKQQ6L Arachis hypogaea
AT1G26500 Arabidopsis thaliana
AT3G62470 Arabidopsis thaliana
AT3G62540 Arabidopsis thaliana
AT5G14820 Arabidopsis thaliana
ATR0064G072 Amborella trichopoda
ATR0680G314 Amborella trichopoda
Atru.chr11.1653 Acer truncatum
Atru.chr5.1013 Acer truncatum
AUR62000117 Chenopodium quinoa
AUR62011817 Chenopodium quinoa
AUR62019298 Chenopodium quinoa
BcaB02g08903 Brassica carinata
BcaB02g08904 Brassica carinata
BcaC07g40729 Brassica carinata
BcaC07g42762 Brassica carinata
BcaC07g42763 Brassica carinata
BcaC07g42764 Brassica carinata
BolC5t31185H Brassica oleracea
BolC8t51308H Brassica oleracea
BraA09t39490Z Brassica rapa
BraA09t40855Z Brassica rapa
C05p24510 Brassica napus
C08p37300 Brassica napus
CAN.G134.73 Capsicum annuum
CAN.G497.86 Capsicum annuum
CANSAT35G1548 Cannabis sativa
CANSAT80G0227 Cannabis sativa
CARHR025470 Cardamine hirsuta
CARHR172800 Cardamine hirsuta
Carub.0001s2452 Capsella rubella
Carub.0005s2919 Capsella rubella
Ca_00463_v3 Cicer arietinum L.
Ca_04951_v3 Cicer arietinum L.
Ca_19328_v3 Cicer arietinum L.
Cc04_g03210 Coffea canephora
Cc11_g12130 Coffea canephora
CDE02G4775 Ceratophyllum demersum
CDE04G3318 Ceratophyllum demersum
CDE07G1979 Ceratophyllum demersum
Cfa005808 Carpinus fangiana
Ciclev10019225m.g Citrus clementina
Ciclev10033964m.g Citrus clementina
CiPaw.07G116900 Carya illinoinensis
CiPaw.08G090200 Carya illinoinensis
CiPaw.13G042800 Carya illinoinensis
ClCG02G014900 Citrullus lanatus
ClCG08G010340 Citrullus lanatus
COL.COLO4_09255 Corchorus olitorius
COL.COLO4_27901 Corchorus olitorius
Cpa.g.sc1.114 Carica papaya
Cpa.g.sc18.34 Carica papaya
CsaV3_2G007110 Cucumis sativus L.
CsaV3_6G032540 Cucumis sativus L.
CsaV3_6G033620 Cucumis sativus L.
CSS0009290 Camellia sinensis var. sinensis
CSS0011122 Camellia sinensis var. sinensis
CSS0015445 Camellia sinensis var. sinensis
CSS0021919 Camellia sinensis var. sinensis
CSS0025369 Camellia sinensis var. sinensis
DCAR_021784 Daucus carota
DCAR_021786 Daucus carota
DCAR_027464 Daucus carota
DCAR_027470 Daucus carota
Dinv24549 Davidia involucrata
Dinv34079 Davidia involucrata
Duzib168G0695 Durio zibethinus
Duzib248G0892 Durio zibethinus
ECA246G1379 Erigeron canadensis
ECA246G3879 Erigeron canadensis
EL10Ac4g10254 Beta vulgaris
EL10Ac4g10271 Beta vulgaris
EL10As5g23523 Beta vulgaris
Eucgr.B03161 Eucalyptus grandis
Eucgr.K03543 Eucalyptus grandis
FAN07G1209 Fragaria x ananassa
FAN12G0629 Fragaria x ananassa
FAN13G0279 Fragaria x ananassa
FAN17G0216 Fragaria x ananassa
FAN22G2146 Fragaria x ananassa
FvH4_4g30220 Fragaria vesca
FvH4_5g39420 Fragaria vesca
Glyma.01G057600 Glycine max
Glyma.02G115700 Glycine max
Glyma.13G227000 Glycine max
Glyma.15G085451 Glycine max
Glyma.17G203100 Glycine max
Gohir.A09G173100 Gossypium hirsutum
Gohir.A13G208900 Gossypium hirsutum
Gohir.D03G178400 Gossypium hirsutum
Gohir.D05G389201 Gossypium hirsutum
Gohir.D09G168800 Gossypium hirsutum
Gohir.D10G255400 Gossypium hirsutum
Gohir.D10G255600 Gossypium hirsutum
Gohir.D13G213300 Gossypium hirsutum
Gorai.004G000100 Gossypium raimondii
Gorai.005G269500 Gossypium raimondii
Gorai.006G190400 Gossypium raimondii
Gorai.007G000300 Gossypium raimondii
Gorai.009G455800 Gossypium raimondii
Gorai.010G245800 Gossypium raimondii
Gorai.013G243600 Gossypium raimondii
GSVIVG01012216001 Vitis vinifera
GSVIVG01029740001 Vitis vinifera
HanXRQChr12g0375311 Helianthus annuus
HanXRQChr15g0482301 Helianthus annuus
Haze_05033 Corylus avellana
Haze_12341 Corylus avellana
Haze_20451 Corylus avellana
Hma1.2p1_0212F.1_g089980 Hydrangea macrophylla
Hma1.2p1_0354F.1_g133480 Hydrangea macrophylla
HPP92_001056 Vanilla planifolia
HPP92_001057 Vanilla planifolia
HPP92_001150 Vanilla planifolia
HPP92_001151 Vanilla planifolia
HPP92_001155 Vanilla planifolia
HPP92_009525 Vanilla planifolia
HPP92_009556 Vanilla planifolia
Lalb_Chr10g0098711 Lupinus albus
Lalb_Chr15g0086301 Lupinus albus
Lj2g0008256 Lotus japonicus
Lj2P994T16 Lonicera japonica
Lj3P1030T40 Lonicera japonica
Lj6g0027999 Lotus japonicus
Lsat_1_v5_gn_3_56000 Lactuca sativa
Lsat_1_v5_gn_3_77561 Lactuca sativa
Manes.01G227300 Manihot esculenta
Manes.10G007100 Manihot esculenta
MBI19_g17402_MAGBIO Magnolia biondii
MD09G1267500 Malus domestica
MD11G1315100 Malus domestica
Medtr2g016740 Medicago truncatula
Medtr5g044120 Medicago truncatula
MELO3C004182.2 Cucumis melo
MELO3C011426.2 Cucumis melo
Migut.D00625 Erythranthe guttata
Migut.E00052 Erythranthe guttata
Migut.K01487 Erythranthe guttata
Migut.K01489 Erythranthe guttata
Migut.K01492 Erythranthe guttata
Migut.K01493 Erythranthe guttata
Migut.K01495 Erythranthe guttata
Migut.K01497 Erythranthe guttata
Migut.K01498 Erythranthe guttata
Migut.K01500 Erythranthe guttata
Migut.K01503 Erythranthe guttata
Migut.K01508 Erythranthe guttata
Migut.L00230 Erythranthe guttata
Migut.L00233 Erythranthe guttata
Migut.L00235 Erythranthe guttata
Migut.L00240 Erythranthe guttata
MSTRG.13447 Avicennia marina
MSTRG.18105 Avicennia marina
Nitab4.5_0000014g0340 Nicotiana tabacum
Nitab4.5_0002247g0010 Nicotiana tabacum
Nitab4.5_0007438g0010 Nicotiana tabacum
Nn2g11925 Nelumbo nucifera
Nn2g11926 Nelumbo nucifera
Nn4g23403 Nelumbo nucifera
Oeu004580.1 Olea europaea
Oeu025277.2 Olea europaea
Oeu047394.1 Olea europaea
Oeu058021.1 Olea europaea
Os05g0355200 Oryza sativa ssp. japonica
Os07g0599201 Oryza sativa ssp. japonica
Peaxi162Scf00282g00074 Petunia axillaris
PGR044G0694 Punica granatum
PGR102G2037 Punica granatum
PGR102G2626 Punica granatum
PGSC0003DMG400027516 Solanum tuberosum
PGSC0003DMG400037705 Solanum tuberosum
Phvul.003G043300 Phaseolus vulgaris
Phvul.006G173400 Phaseolus vulgaris
Potri.008G191200 Populus trichocarpa
Potri.014G121400 Populus trichocarpa
Potri.016G086100 Populus trichocarpa
Prupe.1G285700 Prunus persica
Prupe.8G271400 Prunus persica
Psat1g195440 Pisum sativum
Psat2g129840 Pisum sativum
Psat3g141440 Pisum sativum
QL02p098571 Quercus lobata
QL03p000909 Quercus lobata
QL03p001266 Quercus lobata
QL11p046082 Quercus lobata
QL11p046209 Quercus lobata
RcHm_v2.0_Chr4g0438541 Rosa chinensis
RcHm_v2.0_Chr7g0241731 Rosa chinensis
Rhsim01G0016400 Rhododendron simsii
Rhsim01G0017400 Rhododendron simsii
Rhsim12G0135600 Rhododendron simsii
Sabra14G0089900 Salix brachista
Sabra16G0092400 Salix brachista
SalBow1G2290 Salvia bowleyana
SalBow1G4634 Salvia bowleyana
SalBow1G5575 Salvia bowleyana
SalBow5G1832 Salvia bowleyana
SalBow5G4111 Salvia bowleyana
SalBow8G5094 Salvia bowleyana
Sc04g0007650 Simmondsia chinensis
Sc05g0000430 Simmondsia chinensis
Sed0004899 Sechium edule
Sed0021884 Sechium edule
SEGI_24414 Sequoiadendron giganteum
SEGI_31641 Sequoiadendron giganteum
SEGI_36564 Sequoiadendron giganteum
SGA_v2.0_scaffold32G13356 Striga asiatica
SGA_v2.0_scaffold32G13359 Striga asiatica
SGA_v2.0_scaffold63G21630 Striga asiatica
SGA_v2.0_scaffold8G04573 Striga asiatica
SHI08443 Sapria himalayana
SHI20145 Sapria himalayana
SHI40067 Sapria himalayana
SHI40097 Sapria himalayana
SMO134G0169 Selaginella moellendorffii
SMO280G0002 Selaginella moellendorffii
SMO352G0069 Selaginella moellendorffii
SMO364G0567 Selaginella moellendorffii
Solyc01g097130.4 Solanum lycopersicum
Sopen01g040810 Solanum pennellii
Sopen04g001420 Solanum pennellii
Sp1g22250 Schrenkiella parvula
Sp5g00960 Schrenkiella parvula
TAR365G0924 Trochodendron aralioides
TAR375G0967 Trochodendron aralioides
TAR629G1135 Trochodendron aralioides
THA.LOC104802157 Tarenaya hassleriana
THA.LOC104808568 Tarenaya hassleriana
THA.LOC104817462 Tarenaya hassleriana
Thecc.02G332900 Theobroma cacao
Thecc.09G185200 Theobroma cacao
Thhalv10005842m.g Eutrema salsugineum
Thhalv10009723m.g Eutrema salsugineum
TPR.G4551 Trifolium pratense
TWI36G1650 Tripterygium wilfordii
TWI79G0708 Tripterygium wilfordii
vmacro16404 Vaccinium macrocarpon
VMungo1080G1105 Vigna mungo
VMungo1215G2844 Vigna mungo
Zm00001eb286070 Zea mays
Zm00001eb326760 Zea mays
Zm00001eb347480 Zea mays

User provided reference genes

Program Settings