Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p02780 Brassica napus
A03p63950 Brassica napus
A09p11570 Brassica napus
Aa31LG6G12870 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3235 Anthoceros agrestis
Actinidia03631 Actinidia chinensis
Actinidia17418 Actinidia chinensis
Actinidia22950 Actinidia chinensis
Actinidia22951 Actinidia chinensis
Actinidia29716 Actinidia chinensis
Actinidia33911 Actinidia chinensis
Ah.00g000780 Amaranthus hybridus
Ah.02g123270 Amaranthus hybridus
Ah.03g143150 Amaranthus hybridus
AL3G50800 Arabidopsis lyrata
AL7G15120 Arabidopsis lyrata
Aqoxy6G02139 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.08076P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.30ZN3V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3Q2X1A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.85H9WH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D5QY89 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JHJC5G Arachis hypogaea
AT2G17780 Arabidopsis thaliana
AT4G35920 Arabidopsis thaliana
ATR0180G011 Amborella trichopoda
Atru.chr12.73 Acer truncatum
Atru.chr3.874 Acer truncatum
AUR62003710 Chenopodium quinoa
AUR62013926 Chenopodium quinoa
AUR62018021 Chenopodium quinoa
AUR62018265 Chenopodium quinoa
BcaB07g31704 Brassica carinata
BcaC04g22943 Brassica carinata
BcaNung00779 Brassica carinata
BcaNung04886 Brassica carinata
BcaNung05053 Brassica carinata
BolC1t00293H Brassica oleracea
BolC7t46568H Brassica oleracea
BolC9t54252H Brassica oleracea
BraA01t00263Z Brassica rapa
BraA03t15464Z Brassica rapa
BraA09t36796Z Brassica rapa
BraA09t36803Z Brassica rapa
C01p03090 Brassica napus
C07p61420 Brassica napus
C09p13620 Brassica napus
CAN.G14.31 Capsicum annuum
CAN.G354.50 Capsicum annuum
CAN.G597.6 Capsicum annuum
CAN.G890.2 Capsicum annuum
CANSAT01G2290 Cannabis sativa
CANSAT56G2994 Cannabis sativa
CANSAT56G4403 Cannabis sativa
CARHR108170 Cardamine hirsuta
CARHR244320 Cardamine hirsuta
Carub.0003s3192 Capsella rubella
Carub.0007s0430 Capsella rubella
Ca_03633_v3 Cicer arietinum L.
Ca_24925_v3 Cicer arietinum L.
CBR_g41724 Chara braunii
Cc02_g06080 Coffea canephora
Cc07_g11130 Coffea canephora
CDE02G1899 Ceratophyllum demersum
CDE05G2536 Ceratophyllum demersum
Cfa007009 Carpinus fangiana
Ciclev10025703m.g Citrus clementina
Ciclev10031760m.g Citrus clementina
CiPaw.02G195300 Carya illinoinensis
CiPaw.07G061500 Carya illinoinensis
CiPaw.08G128200 Carya illinoinensis
CiPaw.08G128700 Carya illinoinensis
ClCG01G020490 Citrullus lanatus
ClCG10G000550 Citrullus lanatus
COL.COLO4_22469 Corchorus olitorius
COL.COLO4_25782 Corchorus olitorius
Cpa.g.sc19.136 Carica papaya
Cpa.g.sc6.294 Carica papaya
CsaV3_3G000630 Cucumis sativus L.
CsaV3_6G047370 Cucumis sativus L.
CSS0015402 Camellia sinensis var. sinensis
CSS0018967 Camellia sinensis var. sinensis
CSS0027153 Camellia sinensis var. sinensis
CSS0040516 Camellia sinensis var. sinensis
CSS0042167 Camellia sinensis var. sinensis
DCAR_011609 Daucus carota
DCAR_014040 Daucus carota
DCAR_014041 Daucus carota
Dinv08566 Davidia involucrata
Dinv08567 Davidia involucrata
Dinv10590 Davidia involucrata
Dinv21771 Davidia involucrata
Dinv40124 Davidia involucrata
Duzib147G1303 Durio zibethinus
Duzib187G1649 Durio zibethinus
Duzib264G0614 Durio zibethinus
ECA232G0315 Erigeron canadensis
ECA246G0373 Erigeron canadensis
EL10Ac1g02147 Beta vulgaris
EL10Ac6g15160 Beta vulgaris
Eucgr.I02323 Eucalyptus grandis
Eucgr.J02474 Eucalyptus grandis
FAN19G2156 Fragaria x ananassa
FAN23G2839 Fragaria x ananassa
FAN26G1689 Fragaria x ananassa
FAN28G2594 Fragaria x ananassa
FvH4_1g11310 Fragaria vesca
Glyma.01G164000 Glycine max
Glyma.02G045800 Glycine max
Glyma.02G263300 Glycine max
Glyma.11G079500 Glycine max
Glyma.15G217200 Glycine max
Glyma.16G123800 Glycine max
Gohir.A02G172800 Gossypium hirsutum
Gohir.A11G173100 Gossypium hirsutum
Gohir.D03G007100 Gossypium hirsutum
Gohir.D11G180100 Gossypium hirsutum
Gorai.003G007400 Gossypium raimondii
Gorai.007G192000 Gossypium raimondii
GSVIVG01006329001 Vitis vinifera
GSVIVG01032761001 Vitis vinifera
HanXRQChr08g0225181 Helianthus annuus
HanXRQChr08g0225191 Helianthus annuus
HanXRQChr08g0225201 Helianthus annuus
HanXRQChr09g0256851 Helianthus annuus
HanXRQChr14g0441751 Helianthus annuus
HanXRQChr15g0492971 Helianthus annuus
HanXRQChr16g0531771 Helianthus annuus
Haze_03720 Corylus avellana
Haze_17268 Corylus avellana
HPP92_022189 Vanilla planifolia
HPP92_022191 Vanilla planifolia
Hund01685 Selenicereus undatus
Hund14065 Selenicereus undatus
Hund16509 Selenicereus undatus
Lalb_Chr05g0212231 Lupinus albus
Lalb_Chr16g0391431 Lupinus albus
Lj2A481T18 Lonicera japonica
Lj2g0004895 Lotus japonicus
Lj4A223G30 Lonicera japonica
Lj4g0017355 Lotus japonicus
Lsat_1_v5_gn_2_40920 Lactuca sativa
Lsat_1_v5_gn_3_135881 Lactuca sativa
Lsat_1_v5_gn_3_72001 Lactuca sativa
Lsat_1_v5_gn_4_106460 Lactuca sativa
Lsat_1_v5_gn_4_138720 Lactuca sativa
Lsat_1_v5_gn_4_145360 Lactuca sativa
Manes.01G149200 Manihot esculenta
Manes.02G108200 Manihot esculenta
Manes.07G132904 Manihot esculenta
Manes.07G134400 Manihot esculenta
Mapoly0134s0009 Marchantia polymorpha
MBI03_g17857_MAGBIO Magnolia biondii
MBI08_g37820_MAGBIO Magnolia biondii
MD02G1127400 Malus domestica
MD07G1226300 Malus domestica
MD15G1241400 Malus domestica
Medtr5g022670 Medicago truncatula
Medtr8g075150 Medicago truncatula
MELO3C007929.2 Cucumis melo
MELO3C013751.2 Cucumis melo
Migut.C00882 Erythranthe guttata
Migut.H02182 Erythranthe guttata
Migut.N03178 Erythranthe guttata
MSTRG.1169 Avicennia marina
MSTRG.2732 Avicennia marina
Nitab4.5_0001561g0130 Nicotiana tabacum
Nitab4.5_0001685g0090 Nicotiana tabacum
Nitab4.5_0001789g0130 Nicotiana tabacum
Nitab4.5_0009630g0010 Nicotiana tabacum
Nn5g30797 Nelumbo nucifera
Nn6g31963 Nelumbo nucifera
Oeu048469.1 Olea europaea
Oeu051166.1 Olea europaea
Os03g0157300 Oryza sativa ssp. japonica
Os06g0541600 Oryza sativa ssp. japonica
Os08g0374701 Oryza sativa ssp. japonica
Os11g0664133 Oryza sativa ssp. japonica
Os11g0666100 Oryza sativa ssp. japonica
Os11g0670100 Oryza sativa ssp. japonica
Os11g0671950 Oryza sativa ssp. japonica
Os11g0672300 Oryza sativa ssp. japonica
Peaxi162Scf00064g00716 Petunia axillaris
Peaxi162Scf00328g00415 Petunia axillaris
Peaxi162Scf00635g00918 Petunia axillaris
PGR102G0339 Punica granatum
PGR102G1199 Punica granatum
PGR119G0517 Punica granatum
PGSC0003DMG400022554 Solanum tuberosum
PGSC0003DMG401020596 Solanum tuberosum
PGSC0003DMG402003586 Solanum tuberosum
Phvul.002G106200 Phaseolus vulgaris
Phvul.003G265800 Phaseolus vulgaris
Potri.005G110000 Populus trichocarpa
Potri.010G184700 Populus trichocarpa
Pp3c12_21430 Physcomitrium patens
Pp3c12_21520 Physcomitrium patens
Pp3c3_37470 Physcomitrium patens
Pp3c8_990 Physcomitrium patens
Prupe.2G255300 Prunus persica
Prupe.7G172600 Prunus persica
Psat2g152920 Pisum sativum
Psat4g102160 Pisum sativum
PSO541G5499 Papaver somniferum
PSO675G5639 Papaver somniferum
QL06p051280 Quercus lobata
QL08p063669 Quercus lobata
RcHm_v2.0_Chr2g0098791 Rosa chinensis
Rhsim03G0146300 Rhododendron simsii
Rhsim10G0208100 Rhododendron simsii
Rhsim10G0208400 Rhododendron simsii
Sabra05G0090300 Salix brachista
Sabra10G0141900 Salix brachista
SalBow3G2485 Salvia bowleyana
SalBow3G4638 Salvia bowleyana
Sc02g0008730 Simmondsia chinensis
Sc16g0001940 Simmondsia chinensis
Sed0007955 Sechium edule
Sed0027405 Sechium edule
SEGI_31240 Sequoiadendron giganteum
SEGI_35981 Sequoiadendron giganteum
SEGI_37528 Sequoiadendron giganteum
SEGI_38736 Sequoiadendron giganteum
SGA_v2.0_scaffold145G36074 Striga asiatica
SGA_v2.0_scaffold292G47369 Striga asiatica
SGA_v2.0_scaffold2G00973 Striga asiatica
SMO115G0083 Selaginella moellendorffii
Solyc02g083540.3 Solanum lycopersicum
Solyc03g095820.4 Solanum lycopersicum
Sopen02g028320 Solanum pennellii
Sopen03g025790 Solanum pennellii
Sp3g31190 Schrenkiella parvula
Sp7g33700 Schrenkiella parvula
TAR625G0660 Trochodendron aralioides
TAR628G1483 Trochodendron aralioides
TAR633G0054 Trochodendron aralioides
THA.LOC104804275 Tarenaya hassleriana
THA.LOC104807505 Tarenaya hassleriana
Thecc.01G013800 Theobroma cacao
Thecc.10G011400 Theobroma cacao
Thecc.10G016300 Theobroma cacao
Thhalv10023167m.g Eutrema salsugineum
Thhalv10025310m.g Eutrema salsugineum
TPR.G10549 Trifolium pratense
TPR.G19478 Trifolium pratense
TWI09G1530 Tripterygium wilfordii
TWI73G0570 Tripterygium wilfordii
unitig_32.g11230 Utricularia gibba
vmacro22196 Vaccinium macrocarpon
vmacro23197 Vaccinium macrocarpon
VMungo0251G1356 Vigna mungo
VMungo0647G0639 Vigna mungo
VMungo1215G2759 Vigna mungo
Zm00001eb004320 Zea mays
Zm00001eb059130 Zea mays
Zm00001eb115890 Zea mays
Zm00001eb165310 Zea mays
Zm00001eb165330 Zea mays
Zm00001eb259020 Zea mays

User provided reference genes

Program Settings