Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p36910 Brassica napus
A04p15450 Brassica napus
A06p39780 Brassica napus
A09p04150 Brassica napus
Aa31LG2G3780 Aethionema arabicum
Aa31LG9G16780 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.979 Anthoceros agrestis
Actinidia13397 Actinidia chinensis
Actinidia16150 Actinidia chinensis
Actinidia17601 Actinidia chinensis
Actinidia18073 Actinidia chinensis
Actinidia26265 Actinidia chinensis
Actinidia26266 Actinidia chinensis
Actinidia26535 Actinidia chinensis
Actinidia36264 Actinidia chinensis
Ah.10g038130 Amaranthus hybridus
Ah.16g101100 Amaranthus hybridus
AL5G19860 Arabidopsis lyrata
AL7G51450 Arabidopsis lyrata
Aqoxy3G00510 Aquilegia oxysepala
Aqoxy4G02987 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.27TAQT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2F8F1S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.31R89H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E6G4NP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JZF5VE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R5KZJD Arachis hypogaea
AT3G30180 Arabidopsis thaliana
AT5G38970 Arabidopsis thaliana
ATR0827G030 Amborella trichopoda
ATR0827G080 Amborella trichopoda
Atru.chr11.1597 Acer truncatum
Atru.chr11.1598 Acer truncatum
Atru.chr8.549 Acer truncatum
AUR62009490 Chenopodium quinoa
AUR62023168 Chenopodium quinoa
BcaB04g19521 Brassica carinata
BcaB06g27722 Brassica carinata
BcaB07g30067 Brassica carinata
BcaC02g08866 Brassica carinata
BcaC03g17606 Brassica carinata
BcaC04g23829 Brassica carinata
BcaC06g30853 Brassica carinata
BcaC06g33711 Brassica carinata
BolC2t11654H Brassica oleracea
BolC4t26560H Brassica oleracea
BolC7t44370H Brassica oleracea
BolC9t53367H Brassica oleracea
BraA02t08682Z Brassica rapa
BraA04t17181Z Brassica rapa
BraA06t26893Z Brassica rapa
BraA09t36051Z Brassica rapa
C02p55950 Brassica napus
C04p49710 Brassica napus
C07p38440 Brassica napus
C09p04370 Brassica napus
CAN.G497.79 Capsicum annuum
CAN.G93.52 Capsicum annuum
CANSAT64G2154 Cannabis sativa
CANSAT80G2844 Cannabis sativa
CARHR153250 Cardamine hirsuta
CARHR263500 Cardamine hirsuta
CARHR263510 Cardamine hirsuta
Carub.0005s0840 Capsella rubella
Carub.0007s3688 Capsella rubella
Ca_06832_v3 Cicer arietinum L.
Ca_20765_v3 Cicer arietinum L.
Ca_20766_v3 Cicer arietinum L.
Cc00_g14180 Coffea canephora
Cc11_g11780 Coffea canephora
CDE04G0332 Ceratophyllum demersum
CDE07G1330 Ceratophyllum demersum
CDE10G0425 Ceratophyllum demersum
CDE10G0882 Ceratophyllum demersum
Cfa007685 Carpinus fangiana
Ciclev10011662m.g Citrus clementina
Ciclev10031449m.g Citrus clementina
CiPaw.03G084100 Carya illinoinensis
CiPaw.04G052600 Carya illinoinensis
ClCG11G004920 Citrullus lanatus
COL.COLO4_08395 Corchorus olitorius
COL.COLO4_08396 Corchorus olitorius
COL.COLO4_27852 Corchorus olitorius
Cpa.g.sc1.155 Carica papaya
Cpa.g.sc14.209 Carica papaya
CsaV3_4G028870 Cucumis sativus L.
CsaV3_5G038650 Cucumis sativus L.
CSS0004050 Camellia sinensis var. sinensis
CSS0009174 Camellia sinensis var. sinensis
CSS0014427 Camellia sinensis var. sinensis
CSS0020513 Camellia sinensis var. sinensis
CSS0027748 Camellia sinensis var. sinensis
CSS0028270 Camellia sinensis var. sinensis
DCAR_011026 Daucus carota
DCAR_024133 Daucus carota
DCAR_025449 Daucus carota
Dinv20149 Davidia involucrata
Dinv33855 Davidia involucrata
Dinv34047 Davidia involucrata
Dinv34915 Davidia involucrata
Duzib133G1396 Durio zibethinus
Duzib138G0461 Durio zibethinus
Duzib211G0271 Durio zibethinus
Duzib251G0244 Durio zibethinus
ECA232G0127 Erigeron canadensis
ECA246G3249 Erigeron canadensis
EL10Ac2g04449 Beta vulgaris
Eucgr.I02054 Eucalyptus grandis
Eucgr.J01402 Eucalyptus grandis
Eucgr.J01404 Eucalyptus grandis
Eucgr.J01407 Eucalyptus grandis
Eucgr.L01750 Eucalyptus grandis
Eucgr.L03131 Eucalyptus grandis
FAN02G0519 Fragaria x ananassa
FAN05G3923 Fragaria x ananassa
FAN09G0427 Fragaria x ananassa
FAN14G5537 Fragaria x ananassa
FvH4_6g46500 Fragaria vesca
Glyma.02G120700 Glycine max
Glyma.08G250000 Glycine max
Glyma.13G052900 Glycine max
Glyma.18G272300 Glycine max
Glyma.19G033900 Glycine max
Gohir.A07G079400 Gossypium hirsutum
Gohir.A07G180600 Gossypium hirsutum
Gohir.A13G084100 Gossypium hirsutum
Gohir.A13G084166 Gossypium hirsutum
Gohir.D07G084700 Gossypium hirsutum
Gohir.D07G187300 Gossypium hirsutum
Gohir.D13G083600 Gossypium hirsutum
Gorai.001G090300 Gossypium raimondii
Gorai.001G208200 Gossypium raimondii
Gorai.013G095400 Gossypium raimondii
GSVIVG01012240001 Vitis vinifera
GSVIVG01012243001 Vitis vinifera
GSVIVG01036558001 Vitis vinifera
HanXRQChr15g0472771 Helianthus annuus
HanXRQChr17g0546501 Helianthus annuus
Haze_11881 Corylus avellana
Haze_14392 Corylus avellana
Hma1.2p1_0069F.1_g037460 Hydrangea macrophylla
Hma1.2p1_0566F.1_g179980 Hydrangea macrophylla
Hma1.2p1_1502F.1_g287360 Hydrangea macrophylla
Hma1.2p1_2026F.1_g311600 Hydrangea macrophylla
HPP92_000889 Vanilla planifolia
HPP92_001846 Vanilla planifolia
HPP92_006043 Vanilla planifolia
Hund13682 Selenicereus undatus
Lalb_Chr02g0158731 Lupinus albus
Lalb_Chr04g0258391 Lupinus albus
Lalb_Chr04g0258401 Lupinus albus
Lalb_Chr06g0174841 Lupinus albus
Lalb_Chr10g0098951 Lupinus albus
Lalb_Chr10g0098971 Lupinus albus
Lalb_Chr10g0098991 Lupinus albus
Lalb_Chr10g0099011 Lupinus albus
Lj1g0013308 Lotus japonicus
Lj2g0000392 Lotus japonicus
Lj2g0003518 Lotus japonicus
Lj2g0025933 Lotus japonicus
Lj3A1029T41 Lonicera japonica
Lj4C122T5 Lonicera japonica
Lju361A4T50 Lonicera japonica
Lsat_1_v5_gn_3_96420 Lactuca sativa
Manes.01G102800 Manihot esculenta
Manes.02G058500 Manihot esculenta
Manes.05G112400 Manihot esculenta
MBI16_g31777_MAGBIO Magnolia biondii
MD09G1073300 Malus domestica
MD17G1064800 Malus domestica
Medtr3g007320 Medicago truncatula
Medtr6g015910 Medicago truncatula
Medtr7g016040 Medicago truncatula
MELO3C019193.2 Cucumis melo
MELO3C022045.2 Cucumis melo
Migut.E00042 Erythranthe guttata
Migut.H00596 Erythranthe guttata
MSTRG.23862 Avicennia marina
MSTRG.2979 Avicennia marina
Nitab4.5_0001541g0080 Nicotiana tabacum
Nitab4.5_0003403g0040 Nicotiana tabacum
Nitab4.5_0005120g0020 Nicotiana tabacum
Nitab4.5_0006516g0010 Nicotiana tabacum
Nn3g17504 Nelumbo nucifera
Nn3g19532 Nelumbo nucifera
Nn4g23495 Nelumbo nucifera
Oeu007076.2 Olea europaea
Oeu028718.1 Olea europaea
Oeu033406.1 Olea europaea
Os03g0602300 Oryza sativa ssp. japonica
Peaxi162Scf00166g00212 Petunia axillaris
Peaxi162Scf01197g00112 Petunia axillaris
PGR004G0845 Punica granatum
PGSC0003DMG400001374 Solanum tuberosum
PGSC0003DMG400037578 Solanum tuberosum
Phvul.003G040300 Phaseolus vulgaris
Phvul.004G041700 Phaseolus vulgaris
Phvul.008G028800 Phaseolus vulgaris
Potri.004G117700 Populus trichocarpa
Potri.010G156800 Populus trichocarpa
Potri.017G099000 Populus trichocarpa
Prupe.3G250000 Prunus persica
Psat1g034560 Pisum sativum
Psat1g036080 Pisum sativum
Psat1g066240 Pisum sativum
Psat3g204200 Pisum sativum
PSO017G1636 Papaver somniferum
PSO478G1409 Papaver somniferum
QL02p066169 Quercus lobata
QL03p073599 Quercus lobata
QL03p073609 Quercus lobata
RcHm_v2.0_Chr2g0165151 Rosa chinensis
Rhsim08G0076200 Rhododendron simsii
Rhsim09G0125800 Rhododendron simsii
Rhsim10G0055800 Rhododendron simsii
Sabra04G0070800 Salix brachista
Sabra17G0085500 Salix brachista
SalBow1G8028 Salvia bowleyana
SalBow8G3033 Salvia bowleyana
Sc11g0008770 Simmondsia chinensis
Sed0013203 Sechium edule
Sed0019021 Sechium edule
SEGI_01588 Sequoiadendron giganteum
SEGI_04623 Sequoiadendron giganteum
SEGI_19950 Sequoiadendron giganteum
SGA_v2.0_scaffold52G19105 Striga asiatica
SHI33865 Sapria himalayana
Solyc02g065750.3 Solanum lycopersicum
Solyc02g089160.3 Solanum lycopersicum
Sopen02g015970 Solanum pennellii
Sopen02g033950 Solanum pennellii
Sp2g18100 Schrenkiella parvula
Sp7g02910 Schrenkiella parvula
TAR371G1008 Trochodendron aralioides
TAR374G0304 Trochodendron aralioides
TAR622G0479 Trochodendron aralioides
TAR629G1468 Trochodendron aralioides
TAR636G1348 Trochodendron aralioides
THA.LOC104805522 Tarenaya hassleriana
THA.LOC104822777 Tarenaya hassleriana
THA.LOC104823884 Tarenaya hassleriana
Thecc.02G327000 Theobroma cacao
Thecc.04G104500 Theobroma cacao
Thhalv10004156m.g Eutrema salsugineum
Thhalv10027742m.g Eutrema salsugineum
TPR.G15944 Trifolium pratense
TPR.G23426 Trifolium pratense
TWI31G1316 Tripterygium wilfordii
TWI32G0979 Tripterygium wilfordii
TWI60G0450 Tripterygium wilfordii
unitig_21.g20942 Utricularia gibba
unitig_736.g22270 Utricularia gibba
unitig_899.g15107 Utricularia gibba
vmacro05618 Vaccinium macrocarpon
vmacro10439 Vaccinium macrocarpon
vmacro18134 Vaccinium macrocarpon
vmacro20923 Vaccinium macrocarpon
VMungo0464G2123 Vigna mungo
VMungo1215G0350 Vigna mungo
VMungo1383G1022 Vigna mungo
Zm00001eb002360 Zea mays
Zm00001eb050010 Zea mays

User provided reference genes

Program Settings