Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p40470 Brassica napus
A03p38000 Brassica napus
Aa31LG8G270 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2973 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4061 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4062 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1463 Anthoceros agrestis
Actinidia29987 Actinidia chinensis
Actinidia38541 Actinidia chinensis
Ah.04g164160 Amaranthus hybridus
Ah.04g164180 Amaranthus hybridus
Ah.06g185550 Amaranthus hybridus
Ah.06g185560 Amaranthus hybridus
Ah.15g094250 Amaranthus hybridus
AL3G24760 Arabidopsis lyrata
Aqoxy5G03696 Aquilegia oxysepala
Aqoxy5G03697 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4E0G5V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PSV4UT Arachis hypogaea
AT3G13050 Arabidopsis thaliana
Atru.chr3.4095_Atru.chr3.4097 Acer truncatum
AUR62001308 Chenopodium quinoa
AUR62019597 Chenopodium quinoa
AUR62019600 Chenopodium quinoa
AUR62019601 Chenopodium quinoa
AUR62025690 Chenopodium quinoa
AUR62037566 Chenopodium quinoa
AUR62037573 Chenopodium quinoa
AUR62037575 Chenopodium quinoa
AUR62040614 Chenopodium quinoa
AUR62041593 Chenopodium quinoa
BcaNung06035 Brassica carinata
BcaNung06036 Brassica carinata
BcaNung06037 Brassica carinata
BcaNung07233 Brassica carinata
BolC1t05149H Brassica oleracea
BolC3t16881H Brassica oleracea
BraA01t04082Z Brassica rapa
BraA03t12953Z Brassica rapa
C01p52060 Brassica napus
C03p46080 Brassica napus
CAN.G1124.6 Capsicum annuum
CAN.G1124.7 Capsicum annuum
CAN.G790.2 Capsicum annuum
CANSAT01G2068 Cannabis sativa
CANSAT80G0916 Cannabis sativa
CARHR087610 Cardamine hirsuta
Carub.0003s1237 Capsella rubella
Ca_20975_v3 Cicer arietinum L.
CBR_g24109 Chara braunii
CBR_g48431 Chara braunii
CBR_g51099 Chara braunii
Cc06_g23530 Coffea canephora
Cc06_g23540 Coffea canephora
Cc06_g23550 Coffea canephora
Cc06_g23560 Coffea canephora
Cc06_g23570 Coffea canephora
CDE07G0621 Ceratophyllum demersum
Cfa002164 Carpinus fangiana
Cfa023146 Carpinus fangiana
Ciclev10008092m.g Citrus clementina
Ciclev10008130m.g Citrus clementina
Ciclev10008131m.g Citrus clementina
Ciclev10008136m.g Citrus clementina
Ciclev10008141m.g Citrus clementina
Ciclev10008343m.g Citrus clementina
Ciclev10010744m.g Citrus clementina
Ciclev10028224m.g Citrus clementina
CiPaw.01G092900 Carya illinoinensis
ClCG05G010430 Citrullus lanatus
COL.COLO4_08831 Corchorus olitorius
COL.COLO4_26820 Corchorus olitorius
Cpa.g.sc10.4 Carica papaya
Cre02.g094200 Chlamydomonas reinhardtii
Cre07.g337850 Chlamydomonas reinhardtii
CsaV3_3G018060 Cucumis sativus L.
CSS0002816 Camellia sinensis var. sinensis
CSS0033948 Camellia sinensis var. sinensis
DCAR_010675 Daucus carota
DCAR_020445 Daucus carota
DCAR_030938 Daucus carota
DCAR_030942 Daucus carota
Dinv12632 Davidia involucrata
Dinv20316 Davidia involucrata
Duzib192G0107 Durio zibethinus
Duzib192G0205 Durio zibethinus
Duzib235G0389 Durio zibethinus
ECA234G3835 Erigeron canadensis
ECA234G4416 Erigeron canadensis
ECA236G2327 Erigeron canadensis
ECA240G3134 Erigeron canadensis
ECA248G2026 Erigeron canadensis
EL10Ac4g08377 Beta vulgaris
EL10Ac4g08378 Beta vulgaris
EL10Ac4g08379 Beta vulgaris
EL10Ac7g18108 Beta vulgaris
Eucgr.J03196 Eucalyptus grandis
FAN05G1453 Fragaria x ananassa
FAN09G2389 Fragaria x ananassa
FAN14G4876 Fragaria x ananassa
FvH4_6g36460 Fragaria vesca
Glyma.07G000800 Glycine max
Glyma.08G226400 Glycine max
Gohir.A05G116064 Gossypium hirsutum
Gohir.A06G182400 Gossypium hirsutum
Gohir.A08G082200 Gossypium hirsutum
Gohir.A08G082400 Gossypium hirsutum
Gohir.D05G116800 Gossypium hirsutum
Gohir.D06G189300 Gossypium hirsutum
Gohir.D08G091800 Gossypium hirsutum
Gohir.D08G091900 Gossypium hirsutum
Gorai.004G097300 Gossypium raimondii
Gorai.004G097400 Gossypium raimondii
Gorai.009G120800 Gossypium raimondii
Gorai.010G222000 Gossypium raimondii
GSVIVG01029459001 Vitis vinifera
HanXRQChr02g0055411 Helianthus annuus
HanXRQChr05g0140371 Helianthus annuus
HanXRQChr09g0245291 Helianthus annuus
HanXRQChr10g0309391 Helianthus annuus
Haze_16243 Corylus avellana
Hma1.2p1_0391F.1_g142880 Hydrangea macrophylla
Hma1.2p1_1111F.1_g258490 Hydrangea macrophylla
HPP92_010336 Vanilla planifolia
HPP92_011641 Vanilla planifolia
HPP92_015804 Vanilla planifolia
HPP92_017374 Vanilla planifolia
Hund02281 Selenicereus undatus
Hund05661 Selenicereus undatus
Hund14943 Selenicereus undatus
Hund18554 Selenicereus undatus
Lalb_Chr25g0278501 Lupinus albus
Lj3g0014468 Lotus japonicus
Lj5A772T62 Lonicera japonica
Lj5A811G51 Lonicera japonica
Lj5A811T56 Lonicera japonica
Lj5A811T57 Lonicera japonica
Lj5A836G38 Lonicera japonica
Lj5A836T54 Lonicera japonica
Lj5A837G63 Lonicera japonica
Lj5C777T8 Lonicera japonica
Lj5C832G3 Lonicera japonica
Lj5C832G9 Lonicera japonica
Lj5C836T9 Lonicera japonica
Lj6A249T4 Lonicera japonica
Lj6A29G60 Lonicera japonica
Lj6A36G17 Lonicera japonica
Lj6C34T1 Lonicera japonica
Lsat_1_v5_gn_1_112361 Lactuca sativa
Lsat_1_v5_gn_5_20981 Lactuca sativa
Lsat_1_v5_gn_5_79940 Lactuca sativa
Lsat_1_v5_gn_5_81821 Lactuca sativa
Lsat_1_v5_gn_7_57100 Lactuca sativa
Lsat_1_v5_gn_8_69720 Lactuca sativa
Manes.02G207900 Manihot esculenta
Manes.02G225400 Manihot esculenta
Manes.06G178400 Manihot esculenta
Manes.14G000300 Manihot esculenta
Mapoly0084s0014 Marchantia polymorpha
MBI13_g33581_MAGBIO Magnolia biondii
MBI13_g46509_MAGBIO Magnolia biondii
MCO04G033 Micromonas commoda
MCO05G360 Micromonas commoda
MCO11G350 Micromonas commoda
MD09G1168900 Malus domestica
MD17G1157900 Malus domestica
Medtr3g098360 Medicago truncatula
Medtr4g005090 Medicago truncatula
MELO3C009081.2 Cucumis melo
MELO3C019560.2 Cucumis melo
MELO3C035579.2 Cucumis melo
Migut.I01213 Erythranthe guttata
Migut.J00860 Erythranthe guttata
Migut.J00861 Erythranthe guttata
MSTRG.19413 Avicennia marina
MSTRG.22496 Avicennia marina
MSTRG.5972 Avicennia marina
MSTRG.5973 Avicennia marina
Nitab4.5_0000170g0270 Nicotiana tabacum
Nitab4.5_0000807g0140 Nicotiana tabacum
Nitab4.5_0000807g0160 Nicotiana tabacum
Oeu036966.3 Olea europaea
Oeu062493.1 Olea europaea
Os03g0638200 Oryza sativa ssp. japonica
Os04g0609200 Oryza sativa ssp. japonica
Os07g0571700 Oryza sativa ssp. japonica
Peaxi162Scf00038g02654 Petunia axillaris
Peaxi162Scf00474g00008 Petunia axillaris
Peaxi162Scf00474g00017 Petunia axillaris
Peaxi162Scf00474g00019 Petunia axillaris
Peaxi162Scf01347g00143 Petunia axillaris
PGR031G1558 Punica granatum
PGSC0003DMG400013562 Solanum tuberosum
PGSC0003DMG402026733 Solanum tuberosum
Phvul.010G165500 Phaseolus vulgaris
Potri.007G003000 Populus trichocarpa
Potri.007G003100 Populus trichocarpa
Potri.014G000800 Populus trichocarpa
Potri.018G150700 Populus trichocarpa
Potri.018G151700 Populus trichocarpa
Pp3c12_1850 Physcomitrium patens
Pp3c1_29810 Physcomitrium patens
Pp3c2_6560 Physcomitrium patens
Pp3s30_122 Physcomitrium patens
Pp3s32_530 Physcomitrium patens
PRCOL_00000939 Prasinoderma coloniale
Prupe.3G027200 Prunus persica
Psat7g264680 Pisum sativum
PSO063G1162 Papaver somniferum
PSO170G6886 Papaver somniferum
QL05p085455 Quercus lobata
QL05p085494 Quercus lobata
QL11p005780 Quercus lobata
QL11p005787 Quercus lobata
QL11p006481 Quercus lobata
QL11p006493 Quercus lobata
RcHm_v2.0_Chr2g0148591 Rosa chinensis
Rhsim02G0179600 Rhododendron simsii
Rhsim08G0116300 Rhododendron simsii
Rhsim08G0117300 Rhododendron simsii
Sabra07G0002200 Salix brachista
Sabra18G0126900 Salix brachista
SalBow5G5052 Salvia bowleyana
SalBow6G0987 Salvia bowleyana
SalBow6G4579 Salvia bowleyana
SalBow6G5843 Salvia bowleyana
SalBow6G6770 Salvia bowleyana
Sc12g0011280 Simmondsia chinensis
Sc12g0011400 Simmondsia chinensis
Sed0005238 Sechium edule
Sed0007185 Sechium edule
SEGI_35551 Sequoiadendron giganteum
SEGI_37872 Sequoiadendron giganteum
SGA_v2.0_scaffold122G33257 Striga asiatica
SGA_v2.0_scaffold318G48493 Striga asiatica
SGA_v2.0_scaffold318G48497 Striga asiatica
SHI17049 Sapria himalayana
SMO356G0004 Selaginella moellendorffii
Solyc07g042690.4 Solanum lycopersicum
Solyc07g042900.4 Solanum lycopersicum
Sopen07g022380 Solanum pennellii
Sopen07g022500 Solanum pennellii
Sp3g11200 Schrenkiella parvula
TAR636G0146 Trochodendron aralioides
THA.LOC104815707 Tarenaya hassleriana
THA.LOC104822742 Tarenaya hassleriana
Thecc.06G051000 Theobroma cacao
Thecc.09G197500 Theobroma cacao
Thecc.09G201900 Theobroma cacao
Thecc.K0005000 Theobroma cacao
Thhalv10020555m.g Eutrema salsugineum
TPR.G38798 Trifolium pratense
TWI12G0919 Tripterygium wilfordii
TWI63G1520 Tripterygium wilfordii
unitig_578.g15871 Utricularia gibba
vmacro11068 Vaccinium macrocarpon
vmacro17834 Vaccinium macrocarpon
Zm00001eb028020 Zea mays
Zm00001eb050840 Zea mays
Zm00001eb050850 Zea mays
Zm00001eb104660 Zea mays
Zm00001eb107320 Zea mays
Zm00001eb222640 Zea mays

User provided reference genes

Program Settings