Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p17190 Brassica napus
A03p27570 Brassica napus
A10p08660 Brassica napus
Aa31LG3G290 Aethionema arabicum
Aa31LG3G300 Aethionema arabicum
Aa31LG3G6750 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1124 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis
Actinidia02507 Actinidia chinensis
Actinidia06471 Actinidia chinensis
Actinidia26164 Actinidia chinensis
Ah.09g230010 Amaranthus hybridus
AL7G27100 Arabidopsis lyrata
AL8G23890 Arabidopsis lyrata
Aqoxy6G00125 Aquilegia oxysepala
Aqoxy7G02984 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.G1RM5S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MKF9WG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QS0PB5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UW8EWK Arachis hypogaea
AT4G25910 Arabidopsis thaliana
AT5G49940 Arabidopsis thaliana
ATR0580G236 Amborella trichopoda
ATR1134G081 Amborella trichopoda
Atru.chr6.763 Acer truncatum
Atru.chr7.837 Acer truncatum
AUR62021316 Chenopodium quinoa
AUR62022780 Chenopodium quinoa
AUR62033233 Chenopodium quinoa
BcaB01g02931 Brassica carinata
BcaB01g02932 Brassica carinata
BcaB08g35376 Brassica carinata
BcaC01g04843 Brassica carinata
BcaC04g20838 Brassica carinata
BcaC09g50733 Brassica carinata
BcaNung03768 Brassica carinata
BolC1t02071H Brassica oleracea
BolC3t15650H Brassica oleracea
BolC9t56717H Brassica oleracea
BraA01t01675Z Brassica rapa
BraA03t11970Z Brassica rapa
BraSC37t46137Z Brassica rapa
C01p21510 Brassica napus
C03p33280 Brassica napus
C09p38620 Brassica napus
CAN.G798.52 Capsicum annuum
CAN.G97.7 Capsicum annuum
CANSAT11G1414 Cannabis sativa
CANSAT54G0695 Cannabis sativa
CARHR233380 Cardamine hirsuta
CARHR258780 Cardamine hirsuta
Carub.0007s1504 Capsella rubella
Carub.0008s0982 Capsella rubella
Ca_00046_v3 Cicer arietinum L.
Ca_02035_v3 Cicer arietinum L.
CBR_g3282 Chara braunii
Cc02_g23000 Coffea canephora
Cc05_g08650 Coffea canephora
CDE02G0161 Ceratophyllum demersum
CDE07G0634 Ceratophyllum demersum
CDE08G1347 Ceratophyllum demersum
Cfa004509 Carpinus fangiana
Cfa013406 Carpinus fangiana
Ciclev10002359m.g Citrus clementina
Ciclev10009375m.g Citrus clementina
CiPaw.01G010200 Carya illinoinensis
CiPaw.05G005900 Carya illinoinensis
CiPaw.06G173000 Carya illinoinensis
CiPaw.07G194400 Carya illinoinensis
CiPaw.10G108200 Carya illinoinensis
ClCG02G019990 Citrullus lanatus
ClCG09G022880 Citrullus lanatus
ClCG10G007540 Citrullus lanatus
ClCG11G011960 Citrullus lanatus
ClCG11G013330 Citrullus lanatus
COL.COLO4_06000 Corchorus olitorius
COL.COLO4_17741 Corchorus olitorius
Cpa.g.c34934.1 Carica papaya
Cpa.g.sc30.41 Carica papaya
Cre18.g748447 Chlamydomonas reinhardtii
CsaV3_2G008550 Cucumis sativus L.
CsaV3_5G029830 Cucumis sativus L.
CSS0009235 Camellia sinensis var. sinensis
CSS0034043 Camellia sinensis var. sinensis
CSS0038161 Camellia sinensis var. sinensis
CSS0043588 Camellia sinensis var. sinensis
DCAR_014691 Daucus carota
DCAR_017986 Daucus carota
DCAR_029272 Daucus carota
Dinv07475 Davidia involucrata
Dinv19399 Davidia involucrata
Dinv19562 Davidia involucrata
Duzib052G1033 Durio zibethinus
Duzib150G1318 Durio zibethinus
Duzib170G0717 Durio zibethinus
Duzib248G1383 Durio zibethinus
ECA236G3292 Erigeron canadensis
ECA240G1393 Erigeron canadensis
EL10Ac1g02279 Beta vulgaris
EL10Ac4g08741 Beta vulgaris
EL10Ac5g11549 Beta vulgaris
EL10Ac5g11749 Beta vulgaris
EL10Ac8g18301 Beta vulgaris
Eucgr.C02388 Eucalyptus grandis
Eucgr.G00348 Eucalyptus grandis
FAN01G0458 Fragaria x ananassa
FAN01G1194 Fragaria x ananassa
FAN03G0897 Fragaria x ananassa
FAN06G2452 Fragaria x ananassa
FAN07G2725 Fragaria x ananassa
FAN10G2163 Fragaria x ananassa
FAN12G1553 Fragaria x ananassa
FvH4_4g07770 Fragaria vesca
FvH4_7g01380 Fragaria vesca
Glyma.09G056800 Glycine max
Glyma.12G167700 Glycine max
Glyma.15G163100 Glycine max
Gohir.A01G182600 Gossypium hirsutum
Gohir.A04G132800 Gossypium hirsutum
Gohir.A05G003800 Gossypium hirsutum
Gohir.D01G173700 Gossypium hirsutum
Gohir.D04G176400 Gossypium hirsutum
Gohir.D05G004200 Gossypium hirsutum
Gorai.002G215800 Gossypium raimondii
Gorai.009G003900 Gossypium raimondii
Gorai.012G168000 Gossypium raimondii
GSVIVG01023274001 Vitis vinifera
GSVIVG01029242001 Vitis vinifera
HanXRQChr07g0202151 Helianthus annuus
HanXRQChr10g0294531 Helianthus annuus
Haze_10065 Corylus avellana
Haze_10068 Corylus avellana
Haze_21951 Corylus avellana
Hma1.2p1_0427F.1_g150720 Hydrangea macrophylla
Hma1.2p1_1086F.1_g255470 Hydrangea macrophylla
HPP92_010771 Vanilla planifolia
HPP92_019385 Vanilla planifolia
Hund09037 Selenicereus undatus
Hund15487 Selenicereus undatus
Lalb_Chr04g0264711 Lupinus albus
Lalb_Chr15g0084031 Lupinus albus
Lj6g0011770 Lotus japonicus
Lj6g0014097 Lotus japonicus
Lj9A300T37 Lonicera japonica
Lju50A10T17 Lonicera japonica
Lsat_1_v5_gn_7_53861 Lactuca sativa
Lsat_1_v5_gn_7_76401 Lactuca sativa
Manes.02G223600 Manihot esculenta
Manes.10G119902 Manihot esculenta
Manes.14G157474 Manihot esculenta
Mapoly0019s0107 Marchantia polymorpha
MBI05_g32509_MAGBIO Magnolia biondii
MBI11_g32071_MAGBIO Magnolia biondii
MBI14_g08137_MAGBIO Magnolia biondii
MBI18_g12613_MAGBIO Magnolia biondii
MBI18_g30542_MAGBIO Magnolia biondii
MCO13G021 Micromonas commoda
MD08G1240400 Malus domestica
MD15G1433600 Malus domestica
MD16G1254000 Malus domestica
MD16G1254100 Malus domestica
Medtr2g005900 Medicago truncatula
Medtr2g036690 Medicago truncatula
MELO3C004002.2 Cucumis melo
MELO3C011825.2 Cucumis melo
Migut.B00787 Erythranthe guttata
Migut.M00235 Erythranthe guttata
Migut.N00825 Erythranthe guttata
MSTRG.15077 Avicennia marina
MSTRG.5213 Avicennia marina
Nitab4.5_0000006g0140 Nicotiana tabacum
Nitab4.5_0000667g0090 Nicotiana tabacum
Nitab4.5_0000948g0080 Nicotiana tabacum
Nitab4.5_0002550g0010 Nicotiana tabacum
Nitab4.5_0002596g0070 Nicotiana tabacum
Nitab4.5_0013295g0010 Nicotiana tabacum
Nn1g08385 Nelumbo nucifera
Nn2g10632 Nelumbo nucifera
Nn2g13424 Nelumbo nucifera
Oeu000129.1 Olea europaea
Oeu004408.1 Olea europaea
Oeu045933.1 Olea europaea
Os06g0694500 Oryza sativa ssp. japonica
Os11g0181500 Oryza sativa ssp. japonica
Os12g0176200 Oryza sativa ssp. japonica
Peaxi162Scf00002g02411 Petunia axillaris
Peaxi162Scf00011g00933 Petunia axillaris
Peaxi162Scf00462g00042 Petunia axillaris
PGR042G3227 Punica granatum
PGR044G0478 Punica granatum
PGR044G1571 Punica granatum
PGSC0003DMG400005276 Solanum tuberosum
PGSC0003DMG400024898 Solanum tuberosum
Phvul.006G218300 Phaseolus vulgaris
Phvul.009G238700 Phaseolus vulgaris
Potri.003G009300 Populus trichocarpa
Potri.004G222600 Populus trichocarpa
Potri.006G165600 Populus trichocarpa
Pp3c14_19650 Physcomitrium patens
PRCOL_00002783 Prasinoderma coloniale
Prupe.1G081800 Prunus persica
Prupe.1G577000 Prunus persica
Psat1g146960 Pisum sativum
Psat1g223440 Pisum sativum
PSO063G5418 Papaver somniferum
PSO170G2651 Papaver somniferum
PSO170G4354 Papaver somniferum
PSO782G4022 Papaver somniferum
QL02p100173 Quercus lobata
QL11p005109 Quercus lobata
RcHm_v2.0_Chr1g0317081 Rosa chinensis
RcHm_v2.0_Chr4g0400851 Rosa chinensis
Rhsim02G0076500 Rhododendron simsii
Rhsim05G0118200 Rhododendron simsii
Rhsim11G0124900 Rhododendron simsii
RhsimUnG0217600 Rhododendron simsii
RhsimUnG0217800 Rhododendron simsii
RhsimUnG0218000 Rhododendron simsii
Sabra06G0127400 Salix brachista
SalBow1G5435 Salvia bowleyana
SalBow3G1717 Salvia bowleyana
Sc04g0003500 Simmondsia chinensis
Sc07g0004590 Simmondsia chinensis
Sed0014348 Sechium edule
Sed0018517 Sechium edule
SEGI_16917 Sequoiadendron giganteum
SEGI_17633 Sequoiadendron giganteum
SEGI_35309 Sequoiadendron giganteum
SGA_v2.0_scaffold42G15913 Striga asiatica
SGA_v2.0_scaffold8G04434 Striga asiatica
SHI34758 Sapria himalayana
SMO024G0001 Selaginella moellendorffii
SMO347G0287 Selaginella moellendorffii
Solyc01g103710.4 Solanum lycopersicum
Solyc05g044630.3 Solanum lycopersicum
Sopen01g046120 Solanum pennellii
Sopen05g026930 Solanum pennellii
Sp6g11560 Schrenkiella parvula
Sp7g23940 Schrenkiella parvula
TAR381G0191 Trochodendron aralioides
TAR626G1426 Trochodendron aralioides
TAR628G1090 Trochodendron aralioides
TAR633G1054 Trochodendron aralioides
THA.LOC104799819 Tarenaya hassleriana
THA.LOC104817786 Tarenaya hassleriana
Thecc.02G023300 Theobroma cacao
Thecc.09G178200 Theobroma cacao
Thhalv10014572m.g Eutrema salsugineum
Thhalv10026125m.g Eutrema salsugineum
TPR.G2150 Trifolium pratense
TPR.G9244 Trifolium pratense
TWI34G1171 Tripterygium wilfordii
TWI59G1035 Tripterygium wilfordii
unitig_62.g23130 Utricularia gibba
unitig_699.g19850 Utricularia gibba
unitig_747.g21265 Utricularia gibba
vmacro17581 Vaccinium macrocarpon
vmacro19870 Vaccinium macrocarpon
VMungo0540G0123 Vigna mungo
VMungo1309G0577 Vigna mungo
VMungo1383G1795 Vigna mungo
Zm00001eb201220 Zea mays
Zm00001eb273230 Zea mays

User provided reference genes

Program Settings