Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p16360 Brassica napus
A07p15860 Brassica napus
A07p41520 Brassica napus
Aa31LG6G16670 Aethionema arabicum
Aa31LG7G4640 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.297 Anthoceros agrestis
Actinidia08412 Actinidia chinensis
Actinidia17017 Actinidia chinensis
Actinidia18043 Actinidia chinensis
Actinidia20524 Actinidia chinensis
Actinidia21474 Actinidia chinensis
Ah.07g201150 Amaranthus hybridus
Ah.12g055760 Amaranthus hybridus
AL1G33110 Arabidopsis lyrata
AL2G36050 Arabidopsis lyrata
AL7G10380 Arabidopsis lyrata
Aqoxy5G01110 Aquilegia oxysepala
Aqoxy6G02018 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.22GGTV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I9L5JE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JHE8BQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P458TM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UL609B Arachis hypogaea
AT1G20260 Arabidopsis thaliana
AT1G76030 Arabidopsis thaliana
AT4G38510 Arabidopsis thaliana
ATR0315G072 Amborella trichopoda
Atru.chr13.226 Acer truncatum
Atru.chr5.3427 Acer truncatum
AUR62007389 Chenopodium quinoa
AUR62018596 Chenopodium quinoa
AUR62018598 Chenopodium quinoa
BcaB03g12874 Brassica carinata
BcaB03g14326 Brassica carinata
BcaB07g32032 Brassica carinata
BcaC05g25927 Brassica carinata
BcaC07g39028 Brassica carinata
BcaC08g47095 Brassica carinata
BcaC08g47305 Brassica carinata
BolC5t30584H Brassica oleracea
BolC6t40033H Brassica oleracea
BolC7t42852H Brassica oleracea
BolC8t49640H Brassica oleracea
BraA06t24740Z Brassica rapa
BraA07t29312Z Brassica rapa
BraA07t29317Z Brassica rapa
BraA07t31684Z Brassica rapa
BraA08t34880Z Brassica rapa
C05p18790 Brassica napus
C06p49940 Brassica napus
C07p23150 Brassica napus
C08p20050 Brassica napus
CAN.G1.69 Capsicum annuum
CAN.G588.97 Capsicum annuum
CANSAT25G0160 Cannabis sativa
CARHR020750 Cardamine hirsuta
CARHR069560 Cardamine hirsuta
CARHR294240 Cardamine hirsuta
Carub.0001s1978 Capsella rubella
Carub.0002s2291 Capsella rubella
Carub.0007s0040 Capsella rubella
Ca_03298_v3 Cicer arietinum L.
Ca_08041_v3 Cicer arietinum L.
CBR_g26471 Chara braunii
Cc09_g10280 Coffea canephora
Cc09_g10290 Coffea canephora
CDE02G0917 Ceratophyllum demersum
CDE05G0427 Ceratophyllum demersum
CDE08G0220 Ceratophyllum demersum
Cfa005283 Carpinus fangiana
Ciclev10028070m.g Citrus clementina
CiPaw.05G084900 Carya illinoinensis
CiPaw.06G120400 Carya illinoinensis
ClCG02G003920 Citrullus lanatus
COL.COLO4_26094 Corchorus olitorius
Cpa.g.sc20.109 Carica papaya
Cpa.g.sc20.110 Carica papaya
Cre02.g076350 Chlamydomonas reinhardtii
CsaV3_7G001210 Cucumis sativus L.
CSS0003120 Camellia sinensis var. sinensis
CSS0037071 Camellia sinensis var. sinensis
CSS0037310 Camellia sinensis var. sinensis
CSS0041334 Camellia sinensis var. sinensis
CSS0041541 Camellia sinensis var. sinensis
DCAR_022817 Daucus carota
Dinv14124 Davidia involucrata
Dinv41920 Davidia involucrata
Duzib041G0574 Durio zibethinus
Duzib084G0669 Durio zibethinus
Duzib093G1934 Durio zibethinus
Duzib205G1040 Durio zibethinus
ECA232G1238 Erigeron canadensis
ECA246G2244 Erigeron canadensis
EL10Ac5g11965 Beta vulgaris
Eucgr.F03718 Eucalyptus grandis
Eucgr.G00720 Eucalyptus grandis
Eucgr.G00785 Eucalyptus grandis
Eucgr.G01788 Eucalyptus grandis
FAN15G0499 Fragaria x ananassa
FAN20G0855 Fragaria x ananassa
FAN24G0400 Fragaria x ananassa
FAN27G1308 Fragaria x ananassa
FvH4_2g15620 Fragaria vesca
Glyma.09G245700 Glycine max
Glyma.10G283200 Glycine max
Glyma.18G247300 Glycine max
Glyma.20G106500 Glycine max
Gohir.A01G109000 Gossypium hirsutum
Gohir.A05G256100 Gossypium hirsutum
Gohir.A09G175600 Gossypium hirsutum
Gohir.A11G003800 Gossypium hirsutum
Gohir.D01G095700 Gossypium hirsutum
Gohir.D05G257700 Gossypium hirsutum
Gohir.D09G170600 Gossypium hirsutum
Gohir.D11G003300 Gossypium hirsutum
Gorai.002G121100 Gossypium raimondii
Gorai.006G192200 Gossypium raimondii
Gorai.007G004300 Gossypium raimondii
Gorai.009G269100 Gossypium raimondii
GSVIVG01008750001 Vitis vinifera
GSVIVG01023982001 Vitis vinifera
HanXRQChr05g0148731 Helianthus annuus
HanXRQChr05g0149561 Helianthus annuus
HanXRQChr11g0326121 Helianthus annuus
Haze_02109 Corylus avellana
Haze_22695 Corylus avellana
Haze_26432 Corylus avellana
Haze_27565 Corylus avellana
Hma1.2p1_0032F.1_g019260 Hydrangea macrophylla
Hma1.2p1_0163F.1_g072680 Hydrangea macrophylla
Hma1.2p1_1241F.1_g269680 Hydrangea macrophylla
HPP92_019657 Vanilla planifolia
Hund01714 Selenicereus undatus
Hund11141 Selenicereus undatus
Hund14344 Selenicereus undatus
Lalb_Chr02g0143491 Lupinus albus
Lalb_Chr06g0163721 Lupinus albus
Lalb_Chr21g0307011 Lupinus albus
Lj1g0019006 Lotus japonicus
Lj5C436G8 Lonicera japonica
Lj5g0004072 Lotus japonicus
Lj9A400T57 Lonicera japonica
Lsat_1_v5_gn_3_114341 Lactuca sativa
Lsat_1_v5_gn_4_136201 Lactuca sativa
Lsat_1_v5_gn_6_97661 Lactuca sativa
Manes.04G071200 Manihot esculenta
Manes.05G143200 Manihot esculenta
Manes.11G097700 Manihot esculenta
Manes.18G009500 Manihot esculenta
Mapoly0093s0019 Marchantia polymorpha
Mapoly0113s0041 Marchantia polymorpha
MBI01_g07169_MAGBIO Magnolia biondii
MBI04_g19164_MAGBIO Magnolia biondii
MCO11G333 Micromonas commoda
MD05G1124700 Malus domestica
MD10G1127400 Malus domestica
Medtr1g112870 Medicago truncatula
Medtr7g081010 Medicago truncatula
MELO3C013334.2 Cucumis melo
Migut.B00060 Erythranthe guttata
Migut.N01331 Erythranthe guttata
MSTRG.16928 Avicennia marina
MSTRG.19976 Avicennia marina
MSTRG.5461 Avicennia marina
Nitab4.5_0000079g0230 Nicotiana tabacum
Nitab4.5_0003698g0090 Nicotiana tabacum
Nitab4.5_0004864g0020 Nicotiana tabacum
Nitab4.5_0007759g0030 Nicotiana tabacum
Nitab4.5_0011281g0010 Nicotiana tabacum
Nitab4.5_0011832g0020 Nicotiana tabacum
Nn5g30839 Nelumbo nucifera
Nn6g31918 Nelumbo nucifera
Oeu015516.2 Olea europaea
Oeu015554.3 Olea europaea
Oeu028967.1 Olea europaea
Oeu032534.1 Olea europaea
Os01g0711000 Oryza sativa ssp. japonica
Os06g0568200 Oryza sativa ssp. japonica
Peaxi162Scf00078g01330 Petunia axillaris
Peaxi162Scf00362g00534 Petunia axillaris
PGR031G2873 Punica granatum
PGR042G2669 Punica granatum
PGSC0003DMG400003419 Solanum tuberosum
PGSC0003DMG400026716 Solanum tuberosum
Phvul.007G018000 Phaseolus vulgaris
Phvul.008G050000 Phaseolus vulgaris
Potri.004G177500 Populus trichocarpa
Potri.009G137800 Populus trichocarpa
Pp3c18_5450 Physcomitrium patens
Pp3c21_18320 Physcomitrium patens
Pp3c22_17910 Physcomitrium patens
Pp3c6_12490 Physcomitrium patens
PRCOL_00003568 Prasinoderma coloniale
Prupe.8G168500 Prunus persica
Psat3g100440 Pisum sativum
Psat6g232640 Pisum sativum
PSO170G5281 Papaver somniferum
PSO210G2238 Papaver somniferum
PSO541G0645 Papaver somniferum
PSO675G7436 Papaver somniferum
PSO782G4981 Papaver somniferum
QL05p031677 Quercus lobata
QL11p051258 Quercus lobata
QL11p051533 Quercus lobata
RcHm_v2.0_Chr6g0278821 Rosa chinensis
Rhsim01G0025200 Rhododendron simsii
Rhsim06G0012500 Rhododendron simsii
Rhsim06G0012700 Rhododendron simsii
Rhsim06G0014400 Rhododendron simsii
Rhsim06G0014600 Rhododendron simsii
Sabra04G0119400 Salix brachista
Sabra09G0106900 Salix brachista
SalBow1G5060 Salvia bowleyana
SalBow5G2799 Salvia bowleyana
SalBow5G5493 Salvia bowleyana
Sc01g0007000 Simmondsia chinensis
Sc02g0008820 Simmondsia chinensis
Sc02g0008860 Simmondsia chinensis
Sc07g0008360 Simmondsia chinensis
Sc22g0001990 Simmondsia chinensis
Sc22g0002000 Simmondsia chinensis
Sed0012495 Sechium edule
Sed0017188 Sechium edule
SGA_v2.0_scaffold32G13305 Striga asiatica
SGA_v2.0_scaffold58G20344 Striga asiatica
SHI45061 Sapria himalayana
SMO266G0071 Selaginella moellendorffii
Solyc01g111760.4 Solanum lycopersicum
Solyc10g055670.2 Solanum lycopersicum
Sopen01g053800 Solanum pennellii
Sopen10g025460 Solanum pennellii
Sp1g18010 Schrenkiella parvula
Sp4g00100 Schrenkiella parvula
Sp5g31140 Schrenkiella parvula
Sp7g37260 Schrenkiella parvula
TAR381G0527 Trochodendron aralioides
TAR381G1593 Trochodendron aralioides
TAR625G1349 Trochodendron aralioides
TAR628G1332 Trochodendron aralioides
THA.LOC104807803 Tarenaya hassleriana
THA.LOC104809618 Tarenaya hassleriana
THA.LOC104811439 Tarenaya hassleriana
THA.LOC104824755 Tarenaya hassleriana
Thecc.03G053000 Theobroma cacao
Thecc.08G050500 Theobroma cacao
Thhalv10007492m.g Eutrema salsugineum
Thhalv10018462m.g Eutrema salsugineum
Thhalv10025037m.g Eutrema salsugineum
TPR.G16606 Trifolium pratense
TPR.G2414 Trifolium pratense
TPR.G32112 Trifolium pratense
TWI31G1031 Tripterygium wilfordii
TWI75G0321 Tripterygium wilfordii
TWI79G1370 Tripterygium wilfordii
unitig_0.g2357 Utricularia gibba
unitig_0.g2358 Utricularia gibba
unitig_52.g17368 Utricularia gibba
unitig_578.g16752 Utricularia gibba
vmacro13055 Vaccinium macrocarpon
vmacro21852 Vaccinium macrocarpon
VMungo0720G3030 Vigna mungo
VMungo1383G1452 Vigna mungo
Zm00001eb277330 Zea mays
Zm00001eb385040 Zea mays

User provided reference genes

Program Settings