Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p38430 Brassica napus
A05p33760 Brassica napus
A07p22310 Brassica napus
A09p47840 Brassica napus
Aa31LG8G2860 Aethionema arabicum
Aa31sc43G70 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.376 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1014 Anthoceros agrestis
Actinidia19534 Actinidia chinensis
Actinidia28998 Actinidia chinensis
Ah.03g136480 Amaranthus hybridus
Ah.05g170000 Amaranthus hybridus
AL1G49430 Arabidopsis lyrata
AL3G28320 Arabidopsis lyrata
AL3G40870 Arabidopsis lyrata
AL5G36010 Arabidopsis lyrata
Aqoxy1G02463 Aquilegia oxysepala
Aqoxy1G03999 Aquilegia oxysepala
Aqoxy5G02903 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.18IZSC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.25IQBC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5F4UJS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BU1MR9 Arachis hypogaea
AT3G15660 Arabidopsis thaliana
AT3G54900 Arabidopsis thaliana
ATR0582G248 Amborella trichopoda
ATR0724G012 Amborella trichopoda
ATR0724G071 Amborella trichopoda
ATR0767G165 Amborella trichopoda
Atru.chr1.3105 Acer truncatum
Atru.chr6.2748 Acer truncatum
AUR62003247 Chenopodium quinoa
AUR62027223 Chenopodium quinoa
AUR62027755 Chenopodium quinoa
AUR62038520 Chenopodium quinoa
BcaB01g00148 Brassica carinata
BcaB02g07714 Brassica carinata
BcaB04g20909 Brassica carinata
BcaC07g39768 Brassica carinata
BcaC08g44706 Brassica carinata
BcaC09g48547 Brassica carinata
BolC1t04829H Brassica oleracea
BolC6t37427H Brassica oleracea
BolC8t50618H Brassica oleracea
BraA01t03893Z Brassica rapa
BraA05t22199Z Brassica rapa
BraA07t29909Z Brassica rapa
BraA09t40241Z Brassica rapa
C01p48740 Brassica napus
C05p50770 Brassica napus
C06p22400 Brassica napus
C08p30090 Brassica napus
CAN.G395.44 Capsicum annuum
CAN.G809.5 Capsicum annuum
CANSAT54G1807 Cannabis sativa
CANSAT64G0395 Cannabis sativa
CARHR090750 Cardamine hirsuta
CARHR164890 Cardamine hirsuta
Carub.0003s1541 Capsella rubella
Carub.0005s2151 Capsella rubella
Ca_01086_v3 Cicer arietinum L.
CBR_g41800 Chara braunii
Cc04_g03980 Coffea canephora
Cc05_g02070 Coffea canephora
Cc07_g01480 Coffea canephora
CDE01G0177 Ceratophyllum demersum
CDE09G0376 Ceratophyllum demersum
Cfa006281 Carpinus fangiana
Cfa010927 Carpinus fangiana
Ciclev10016894m.g Citrus clementina
Ciclev10026629m.g Citrus clementina
CiPaw.01G244000 Carya illinoinensis
CiPaw.08G116300 Carya illinoinensis
ClCG10G010110 Citrullus lanatus
ClCG11G010980 Citrullus lanatus
COL.COLO4_06601 Corchorus olitorius
COL.COLO4_12888 Corchorus olitorius
Cpa.g.sc10.223 Carica papaya
Cre07.g325600 Chlamydomonas reinhardtii
Cre07.g325743 Chlamydomonas reinhardtii
CsaV3_2G009510 Cucumis sativus L.
CsaV3_4G001380 Cucumis sativus L.
CSS0009163 Camellia sinensis var. sinensis
CSS0016276 Camellia sinensis var. sinensis
CSS0022165 Camellia sinensis var. sinensis
CSS0022469 Camellia sinensis var. sinensis
CSS0029114 Camellia sinensis var. sinensis
CSS0032119 Camellia sinensis var. sinensis
CSS0032266 Camellia sinensis var. sinensis
CSS0038997 Camellia sinensis var. sinensis
CSS0043406 Camellia sinensis var. sinensis
CSS0045002 Camellia sinensis var. sinensis
DCAR_000959 Daucus carota
DCAR_021328 Daucus carota
Dinv11584 Davidia involucrata
Dinv30210 Davidia involucrata
Dinv33255 Davidia involucrata
Duzib128G0294 Durio zibethinus
Duzib192G0175 Durio zibethinus
ECA234G3104 Erigeron canadensis
ECA238G2587 Erigeron canadensis
ECA246G2008 Erigeron canadensis
EL10Ac1g01218 Beta vulgaris
EL10Ac6g13924 Beta vulgaris
Eucgr.D00987 Eucalyptus grandis
Eucgr.D00992 Eucalyptus grandis
Eucgr.D00994 Eucalyptus grandis
Eucgr.I01560 Eucalyptus grandis
FAN02G4334 Fragaria x ananassa
FAN05G3026 Fragaria x ananassa
FAN09G1422 Fragaria x ananassa
FAN09G3438 Fragaria x ananassa
FAN14G1569 Fragaria x ananassa
FAN25G3150 Fragaria x ananassa
FvH4_6g00720 Fragaria vesca
FvH4_6g30390 Fragaria vesca
Glyma.07G032600 Glycine max
Glyma.08G209900 Glycine max
Glyma.09G252200 Glycine max
Glyma.13G363100 Glycine max
Glyma.18G240400 Glycine max
Gohir.A10G076500 Gossypium hirsutum
Gohir.A11G020200 Gossypium hirsutum
Gohir.D10G074800 Gossypium hirsutum
Gohir.D11G019900 Gossypium hirsutum
Gorai.007G021200 Gossypium raimondii
Gorai.011G080700 Gossypium raimondii
GSVIVG01017244001 Vitis vinifera
GSVIVG01032936001 Vitis vinifera
HanXRQChr10g0304481 Helianthus annuus
HanXRQChr14g0451571 Helianthus annuus
HanXRQChr16g0504211 Helianthus annuus
Haze_03014 Corylus avellana
Haze_03021 Corylus avellana
Haze_04529 Corylus avellana
Haze_26315 Corylus avellana
Haze_27646 Corylus avellana
Hma1.2p1_0421F.1_g149800 Hydrangea macrophylla
Hma1.2p1_0421F.1_g149810 Hydrangea macrophylla
Hma1.2p1_0515F.1_g170270 Hydrangea macrophylla
HPP92_006344 Vanilla planifolia
Lalb_Chr03g0038351 Lupinus albus
Lalb_Chr22g0351021 Lupinus albus
Lj1g0025103 Lotus japonicus
Lj3g0003704 Lotus japonicus
Lj3g0006687 Lotus japonicus
Lj5A68T68 Lonicera japonica
Lj7P620T26 Lonicera japonica
Lsat_1_v5_gn_1_37260 Lactuca sativa
Lsat_1_v5_gn_2_95140 Lactuca sativa
Lsat_1_v5_gn_6_117141 Lactuca sativa
Manes.04G095400 Manihot esculenta
Manes.04G117000 Manihot esculenta
Manes.11G052500 Manihot esculenta
Mapoly0006s0309 Marchantia polymorpha
Mapoly0037s0022 Marchantia polymorpha
MBI01_g11878_MAGBIO Magnolia biondii
MBI11_g22250_MAGBIO Magnolia biondii
MBI11_g35129_MAGBIO Magnolia biondii
MCO03G072 Micromonas commoda
MCO10G282 Micromonas commoda
MD04G1241900 Malus domestica
MD12G1258800 Malus domestica
MD17G1204000 Malus domestica
Medtr2g103130 Medicago truncatula
Medtr7g079520 Medicago truncatula
MELO3C008750.2 Cucumis melo
MELO3C017902.2 Cucumis melo
Migut.B01277 Erythranthe guttata
Migut.F00004 Erythranthe guttata
MSTRG.3033 Avicennia marina
MSTRG.334 Avicennia marina
Nitab4.5_0000620g0090 Nicotiana tabacum
Nitab4.5_0003512g0090 Nicotiana tabacum
Nitab4.5_0011381g0010 Nicotiana tabacum
Nitab4.5_0011717g0010 Nicotiana tabacum
Nn3g16178 Nelumbo nucifera
Nn3g16181 Nelumbo nucifera
Nn7g37528 Nelumbo nucifera
Oeu033463.1 Olea europaea
Os01g0174900 Oryza sativa ssp. japonica
Os01g0530400 Oryza sativa ssp. japonica
Os03g0851200 Oryza sativa ssp. japonica
Peaxi162Scf00207g00075 Petunia axillaris
Peaxi162Scf00331g00001 Petunia axillaris
Peaxi162Scf00404g00097 Petunia axillaris
PGR102G1290 Punica granatum
PGR142G0333 Punica granatum
PGSC0003DMG400013635 Solanum tuberosum
PGSC0003DMG401028515 Solanum tuberosum
Phvul.008G055800 Phaseolus vulgaris
Phvul.010G153500 Phaseolus vulgaris
Potri.003G060600 Populus trichocarpa
Potri.014G141200 Populus trichocarpa
Pp3c24_14100 Physcomitrium patens
Pp3c26_14030 Physcomitrium patens
Pp3c3_2430 Physcomitrium patens
Pp3c8_18520 Physcomitrium patens
PRCOL_00004742 Prasinoderma coloniale
PRCOL_00004792 Prasinoderma coloniale
Prupe.3G079000 Prunus persica
Prupe.6G359300 Prunus persica
Prupe.8G067300 Prunus persica
Psat3g104200 Pisum sativum
Psat5g300480 Pisum sativum
PSO017G6205 Papaver somniferum
PSO170G1001 Papaver somniferum
PSO210G6149 Papaver somniferum
PSO407G0198 Papaver somniferum
PSO478G4380 Papaver somniferum
QL07p015408 Quercus lobata
RcHm_v2.0_Chr2g0136741 Rosa chinensis
RcHm_v2.0_Chr3g0448191 Rosa chinensis
Rhsim02G0062300 Rhododendron simsii
Sabra03G0034800 Salix brachista
Sabra14G0106500 Salix brachista
SalBow4G1428 Salvia bowleyana
SalBow5G2628 Salvia bowleyana
Sc07g0003420 Simmondsia chinensis
Sc09g0002660 Simmondsia chinensis
Sed0007820 Sechium edule
Sed0018385 Sechium edule
SEGI_39266 Sequoiadendron giganteum
SGA_v2.0_scaffold173G39202 Striga asiatica
SGA_v2.0_scaffold39G15188 Striga asiatica
SHI32413 Sapria himalayana
SMO141G0103 Selaginella moellendorffii
SMO340G0324 Selaginella moellendorffii
SMO347G0493 Selaginella moellendorffii
Solyc02g082200.4 Solanum lycopersicum
Solyc06g067960.3 Solanum lycopersicum
Sopen02g026860 Solanum pennellii
Sopen06g025240 Solanum pennellii
Sp3g13960 Schrenkiella parvula
Sp5g07530 Schrenkiella parvula
TAR383G0630 Trochodendron aralioides
TAR622G0119 Trochodendron aralioides
TAR636G1119 Trochodendron aralioides
THA.LOC104809971 Tarenaya hassleriana
THA.LOC104815538 Tarenaya hassleriana
THA.LOC104818039 Tarenaya hassleriana
THA.LOC104824236 Tarenaya hassleriana
Thecc.06G074000 Theobroma cacao
Thecc.09G244600 Theobroma cacao
Thhalv10010760m.g Eutrema salsugineum
Thhalv10021647m.g Eutrema salsugineum
TPR.G36142 Trifolium pratense
TPR.G37160 Trifolium pratense
TWI12G0482 Tripterygium wilfordii
TWI12G0603 Tripterygium wilfordii
TWI18G1279 Tripterygium wilfordii
TWI23G0202 Tripterygium wilfordii
unitig_26.g9275 Utricularia gibba
vmacro15570 Vaccinium macrocarpon
vmacro22107 Vaccinium macrocarpon
vmacro22927 Vaccinium macrocarpon
VMungo0331G1315 Vigna mungo
VMungo1215G2316 Vigna mungo
Zm00001eb064590 Zea mays
Zm00001eb210730 Zea mays
Zm00001eb319160 Zea mays
Zm00001eb336840 Zea mays
Zm00001eb360150 Zea mays
Zm00001eb424600 Zea mays

User provided reference genes

Program Settings