Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p28120 Brassica napus
A09p18660 Brassica napus
Aa31LG1G5410 Aethionema arabicum
Aa31LG2G11240 Aethionema arabicum
Actinidia00167 Actinidia chinensis
Actinidia08684 Actinidia chinensis
Actinidia26186 Actinidia chinensis
Ah.06g188440 Amaranthus hybridus
AL1G67330 Arabidopsis lyrata
Aqoxy5G00844 Aquilegia oxysepala
Aqoxy7G00018 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3P7FNU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I3LLGY Arachis hypogaea
AT1G57680 Arabidopsis thaliana
ATR0152G016 Amborella trichopoda
ATR0620G159 Amborella trichopoda
ATR0733G018 Amborella trichopoda
ATR0737G083 Amborella trichopoda
ATR1089G101 Amborella trichopoda
Atru.chr12.2359 Acer truncatum
Atru.chr6.455 Acer truncatum
AUR62000568 Chenopodium quinoa
BcaB04g20182 Brassica carinata
BcaB07g31158 Brassica carinata
BcaC02g10709 Brassica carinata
BcaC04g22106 Brassica carinata
BcaC06g31780 Brassica carinata
BcaC09g49521 Brassica carinata
BolC1t03524H Brassica oleracea
BolC4t24099H Brassica oleracea
BolC9t55247H Brassica oleracea
BraA01t02939Z Brassica rapa
BraA09t37489Z Brassica rapa
C01p35650 Brassica napus
C04p26980 Brassica napus
C09p23290 Brassica napus
CAN.G1527.11 Capsicum annuum
CAN.G855.35 Capsicum annuum
CANSAT21G1331 Cannabis sativa
CARHR054490 Cardamine hirsuta
Carub.0002s0693 Capsella rubella
Ca_00022_v3 Cicer arietinum L.
Ca_16753_v3 Cicer arietinum L.
CBR_g2915 Chara braunii
Cc02_g23390 Coffea canephora
CDE02G4474 Ceratophyllum demersum
Cfa004466 Carpinus fangiana
Cfa016178 Carpinus fangiana
Ciclev10001394m.g Citrus clementina
Ciclev10021220m.g Citrus clementina
CiPaw.05G002800 Carya illinoinensis
CiPaw.05G202500 Carya illinoinensis
CiPaw.06G175900 Carya illinoinensis
ClCG07G009840 Citrullus lanatus
COL.COLO4_14346 Corchorus olitorius
COL.COLO4_17694 Corchorus olitorius
Cpa.g.sc113.20 Carica papaya
Cpa.g.sc3.141 Carica papaya
Cre02.g080950 Chlamydomonas reinhardtii
CsaV3_3G006550 Cucumis sativus L.
CsaV3_4G008490 Cucumis sativus L.
CSS0009773 Camellia sinensis var. sinensis
CSS0014121 Camellia sinensis var. sinensis
DCAR_006659 Daucus carota
DCAR_012356 Daucus carota
DCAR_021340 Daucus carota
DCAR_031795 Daucus carota
Dinv19431 Davidia involucrata
Dinv29229 Davidia involucrata
Dinv29614 Davidia involucrata
Dinv35371 Davidia involucrata
Duzib052G0871 Durio zibethinus
Duzib068G1338 Durio zibethinus
Duzib084G0218 Durio zibethinus
Duzib132G0923 Durio zibethinus
Duzib205G1289 Durio zibethinus
ECA234G2699 Erigeron canadensis
EL10Ac4g09691 Beta vulgaris
Eucgr.G00246 Eucalyptus grandis
FAN01G2103 Fragaria x ananassa
FAN03G2192 Fragaria x ananassa
FAN04G1944 Fragaria x ananassa
FAN08G2963 Fragaria x ananassa
FAN10G0171 Fragaria x ananassa
FAN10G2062 Fragaria x ananassa
FAN18G1247 Fragaria x ananassa
FvH4_5g28140 Fragaria vesca
FvH4_7g32590 Fragaria vesca
Glyma.04G231300 Glycine max
Glyma.06G133900 Glycine max
Glyma.07G273400 Glycine max
Glyma.08G299100 Glycine max
Glyma.12G165000 Glycine max
Glyma.16G001300 Glycine max
Gohir.A03G216000 Gossypium hirsutum
Gohir.A04G134000 Gossypium hirsutum
Gohir.A08G097800 Gossypium hirsutum
Gohir.D01G131300 Gossypium hirsutum
Gohir.D02G237600 Gossypium hirsutum
Gohir.D04G177200 Gossypium hirsutum
Gohir.D08G114700 Gossypium hirsutum
Gorai.002G163000 Gossypium raimondii
Gorai.004G123600 Gossypium raimondii
Gorai.005G266100 Gossypium raimondii
Gorai.012G170100 Gossypium raimondii
GSVIVG01023219001 Vitis vinifera
HanXRQChr03g0068081 Helianthus annuus
HanXRQChr10g0299381 Helianthus annuus
HanXRQChr16g0513621 Helianthus annuus
Haze_10023 Corylus avellana
Hma1.2p1_0157F.1_g068985 Hydrangea macrophylla
Hma1.2p1_1368F.1_g278530 Hydrangea macrophylla
HPP92_000459 Vanilla planifolia
HPP92_004505 Vanilla planifolia
HPP92_004537 Vanilla planifolia
HPP92_004661 Vanilla planifolia
Hund07200 Selenicereus undatus
Hund21778 Selenicereus undatus
Hund26186 Selenicereus undatus
Lalb_Chr08g0239831 Lupinus albus
Lalb_Chr18g0061101 Lupinus albus
Lalb_Chr23g0271821 Lupinus albus
Lj1g0010184 Lotus japonicus
Lj1P1026T15 Lonicera japonica
Lj3P898T29 Lonicera japonica
Lj5P271T19 Lonicera japonica
Lj6g0026247 Lotus japonicus
Lj9P296T23 Lonicera japonica
Lsat_1_v5_gn_5_104780 Lactuca sativa
Lsat_1_v5_gn_8_4621 Lactuca sativa
Lsat_1_v5_gn_9_121240 Lactuca sativa
Manes.01G039000 Manihot esculenta
Manes.05G193600 Manihot esculenta
Manes.07G026600 Manihot esculenta
Manes.10G115400 Manihot esculenta
Mapoly0003s0203 Marchantia polymorpha
Mapoly0076s0026 Marchantia polymorpha
MBI03_g28424_MAGBIO Magnolia biondii
MD01G1227000 Malus domestica
MD07G1297300 Malus domestica
MD08G1245000 Malus domestica
MD15G1440100 Malus domestica
Medtr2g005260 Medicago truncatula
Medtr3g092200 Medicago truncatula
Medtr4g081890 Medicago truncatula
Medtr4g081900 Medicago truncatula
MELO3C016080.2 Cucumis melo
MELO3C016485.2 Cucumis melo
Migut.B00736 Erythranthe guttata
Migut.F00164 Erythranthe guttata
Migut.F01000 Erythranthe guttata
Migut.N00855 Erythranthe guttata
MSTRG.16479 Avicennia marina
MSTRG.26992 Avicennia marina
MSTRG.27874 Avicennia marina
MSTRG.38 Avicennia marina
MSTRG.5197 Avicennia marina
Nitab4.5_0000015g0110 Nicotiana tabacum
Nitab4.5_0000319g0280 Nicotiana tabacum
Nitab4.5_0001057g0160 Nicotiana tabacum
Nitab4.5_0001865g0020 Nicotiana tabacum
Nitab4.5_0002546g0060 Nicotiana tabacum
Nitab4.5_0007028g0010 Nicotiana tabacum
Nn1g00396 Nelumbo nucifera
Nn3g18827 Nelumbo nucifera
Nn5g27275 Nelumbo nucifera
Oeu010215.1 Olea europaea
Oeu021642.1 Olea europaea
Oeu021643.1 Olea europaea
Oeu021644.1 Olea europaea
Oeu021645.1 Olea europaea
Oeu037030.1 Olea europaea
Oeu043622.1 Olea europaea
Oeu058643.1 Olea europaea
Oeu061018.1 Olea europaea
Os01g0885200 Oryza sativa ssp. japonica
Os04g0443700 Oryza sativa ssp. japonica
Peaxi162Scf00011g01619 Petunia axillaris
Peaxi162Scf00011g01728 Petunia axillaris
Peaxi162Scf00527g00740 Petunia axillaris
Peaxi162Scf00618g00019 Petunia axillaris
Peaxi162Scf00740g00054 Petunia axillaris
Peaxi162Scf01464g00029 Petunia axillaris
PGR142G3898 Punica granatum
PGR142G4069 Punica granatum
PGR142G4371 Punica granatum
PGSC0003DMG400003229 Solanum tuberosum
PGSC0003DMG400024875 Solanum tuberosum
PGSC0003DMG400030232 Solanum tuberosum
Phvul.003G075300 Phaseolus vulgaris
Phvul.006G220600 Phaseolus vulgaris
Phvul.009G049800 Phaseolus vulgaris
Potri.003G003500 Populus trichocarpa
Potri.004G227000 Populus trichocarpa
Potri.012G023500 Populus trichocarpa
Pp3c1_36080 Physcomitrium patens
Pp3c2_5540 Physcomitrium patens
PRCOL_00003360 Prasinoderma coloniale
Prupe.1G582400 Prunus persica
Prupe.2G316900 Prunus persica
Psat1g223800 Pisum sativum
Psat5g073760 Pisum sativum
PSO017G5438 Papaver somniferum
PSO063G4320 Papaver somniferum
PSO170G5519 Papaver somniferum
PSO782G2007 Papaver somniferum
QL02p101856 Quercus lobata
QL09p007458 Quercus lobata
RcHm_v2.0_Chr1g0382461 Rosa chinensis
RcHm_v2.0_Chr7g0220291 Rosa chinensis
Rhsim03G0213500 Rhododendron simsii
Rhsim05G0116700 Rhododendron simsii
Rhsim11G0121400 Rhododendron simsii
Sabra01G0172400 Salix brachista
Sabra03G0001800 Salix brachista
SalBow4G0860 Salvia bowleyana
Sc09g0002020 Simmondsia chinensis
Sc16g0009750 Simmondsia chinensis
Sed0007409 Sechium edule
Sed0008691 Sechium edule
SEGI_27222 Sequoiadendron giganteum
SEGI_28987 Sequoiadendron giganteum
SGA_v2.0_scaffold120G32906 Striga asiatica
SGA_v2.0_scaffold141G35537 Striga asiatica
SHI04877 Sapria himalayana
SHI32508 Sapria himalayana
SHI32509 Sapria himalayana
SMO266G0089 Selaginella moellendorffii
SMO364G0496 Selaginella moellendorffii
Solyc01g103200.4 Solanum lycopersicum
Solyc03g082540.4 Solanum lycopersicum
Solyc06g053230.4 Solanum lycopersicum
Sopen01g045610 Solanum pennellii
Sopen01g045630 Solanum pennellii
Sopen03g022290 Solanum pennellii
Sopen06g018300 Solanum pennellii
Sp2g05650 Schrenkiella parvula
TAR362G0126 Trochodendron aralioides
TAR381G0357 Trochodendron aralioides
TAR624G0320 Trochodendron aralioides
THA.LOC104813274 Tarenaya hassleriana
THA.LOC104816831 Tarenaya hassleriana
THA.LOC104820362 Tarenaya hassleriana
THA.LOC104823706 Tarenaya hassleriana
Thecc.02G014300 Theobroma cacao
Thecc.03G206200 Theobroma cacao
Thhalv10023548m.g Eutrema salsugineum
TPR.G2087 Trifolium pratense
TPR.G33648 Trifolium pratense
TPR.G34019 Trifolium pratense
TWI14G1040 Tripterygium wilfordii
TWI23G0700 Tripterygium wilfordii
TWI59G0859 Tripterygium wilfordii
unitig_26.g9163 Utricularia gibba
unitig_37.g11991 Utricularia gibba
unitig_699.g19846 Utricularia gibba
unitig_749.g14215 Utricularia gibba
vmacro06424 Vaccinium macrocarpon
VMungo0540G0642 Vigna mungo
VMungo1215G1734 Vigna mungo
VMungo1309G2217 Vigna mungo
Zm00001eb145510 Zea mays
Zm00001eb366030 Zea mays
Zm00001eb423090 Zea mays

User provided reference genes

Program Settings