Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p10800 Brassica napus
A09p43360 Brassica napus
Aa31LG2G16410 Aethionema arabicum
Aa31LG8G13270 Aethionema arabicum
Actinidia00435 Actinidia chinensis
Actinidia12054 Actinidia chinensis
Actinidia16485 Actinidia chinensis
Actinidia36492 Actinidia chinensis
Ah.02g124250 Amaranthus hybridus
AL3G47350 Arabidopsis lyrata
AL3G47360 Arabidopsis lyrata
AL5G30470 Arabidopsis lyrata
AL7G17400 Arabidopsis lyrata
Aqoxy6G01312 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3RN0DU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L9K6IL Arachis hypogaea
AT2G15590 Arabidopsis thaliana
AT2G15610 Arabidopsis thaliana
AT3G50350 Arabidopsis thaliana
AT4G33985 Arabidopsis thaliana
ATR1102G011 Amborella trichopoda
Atru.chr3.330 Acer truncatum
Atru.chr5.2691 Acer truncatum
AUR62001929 Chenopodium quinoa
BcaB01g00623 Brassica carinata
BcaB03g11863 Brassica carinata
BcaB07g31786 Brassica carinata
BcaC01g00942 Brassica carinata
BcaC04g23044 Brassica carinata
BcaC07g39494 Brassica carinata
BcaNung03355 Brassica carinata
BolC3t20906H Brassica oleracea
BolC7t46451H Brassica oleracea
BolC8t50161H Brassica oleracea
BolC9t54164H Brassica oleracea
BraA03t15321Z Brassica rapa
BraA08t33684Z Brassica rapa
BraA09t36722Z Brassica rapa
BraA09t39805Z Brassica rapa
C03p86180 Brassica napus
C07p60110 Brassica napus
C08p25400 Brassica napus
C09p12770 Brassica napus
CAN.G1041.32 Capsicum annuum
CAN.G660.6 Capsicum annuum
CANSAT01G3177 Cannabis sativa
CANSAT25G1617 Cannabis sativa
CANSAT25G3221 Cannabis sativa
CARHR105930 Cardamine hirsuta
CARHR105940 Cardamine hirsuta
CARHR159810 Cardamine hirsuta
CARHR242120 Cardamine hirsuta
Carub.0003s2936 Capsella rubella
Carub.0003s2937 Capsella rubella
Carub.0005s1666 Capsella rubella
Carub.0007s0641 Capsella rubella
Ca_18692_v3 Cicer arietinum L.
Cc02_g18850 Coffea canephora
Cc07_g05980 Coffea canephora
CDE04G2954 Ceratophyllum demersum
CDE08G1149 Ceratophyllum demersum
Cfa004022 Carpinus fangiana
Cfa004532 Carpinus fangiana
Ciclev10026655m.g Citrus clementina
Ciclev10029483m.g Citrus clementina
CiPaw.01G018300 Carya illinoinensis
CiPaw.02G008300 Carya illinoinensis
CiPaw.05G007400 Carya illinoinensis
ClCG01G016820 Citrullus lanatus
ClCG02G012570 Citrullus lanatus
COL.COLO4_11410 Corchorus olitorius
COL.COLO4_32648 Corchorus olitorius
Cpa.g.sc55.149 Carica papaya
Cpa.g.sc62.5 Carica papaya
CsaV3_2G016680 Cucumis sativus L.
CsaV3_6G043260 Cucumis sativus L.
CSS0004479 Camellia sinensis var. sinensis
CSS0005246 Camellia sinensis var. sinensis
CSS0023625 Camellia sinensis var. sinensis
CSS0037387 Camellia sinensis var. sinensis
CSS0039510 Camellia sinensis var. sinensis
DCAR_010893 Daucus carota
DCAR_019242 Daucus carota
Dinv01796 Davidia involucrata
Dinv15717 Davidia involucrata
Dinv29985 Davidia involucrata
Dinv39850 Davidia involucrata
Duzib147G0091 Durio zibethinus
Duzib187G0893 Durio zibethinus
Duzib248G1188 Durio zibethinus
Duzib264G1145 Durio zibethinus
ECA232G4130 Erigeron canadensis
ECA236G2615 Erigeron canadensis
ECA238G1425 Erigeron canadensis
ECA240G2293 Erigeron canadensis
ECA246G1315 Erigeron canadensis
EL10Ac6g15746 Beta vulgaris
Eucgr.H01662 Eucalyptus grandis
Eucgr.I00927 Eucalyptus grandis
Eucgr.I01146 Eucalyptus grandis
FAN15G2689 Fragaria x ananassa
FAN19G2065 Fragaria x ananassa
FAN23G0138 Fragaria x ananassa
FAN26G2013 Fragaria x ananassa
FAN27G3466 Fragaria x ananassa
FAN28G2874 Fragaria x ananassa
FvH4_1g16050 Fragaria vesca
FvH4_2g05911 Fragaria vesca
Glyma.01G185900 Glycine max
Glyma.07G218300 Glycine max
Glyma.11G056100 Glycine max
Glyma.20G015200 Glycine max
Gohir.A02G157400 Gossypium hirsutum
Gohir.A03G188800 Gossypium hirsutum
Gohir.A10G091800 Gossypium hirsutum
Gohir.A11G192200 Gossypium hirsutum
Gohir.A12G071000 Gossypium hirsutum
Gohir.A13G040800 Gossypium hirsutum
Gohir.D02G209500 Gossypium hirsutum
Gohir.D03G023400 Gossypium hirsutum
Gohir.D08G139450 Gossypium hirsutum
Gohir.D08G190200 Gossypium hirsutum
Gohir.D10G096500 Gossypium hirsutum
Gohir.D11G198900 Gossypium hirsutum
Gohir.D12G069300 Gossypium hirsutum
Gohir.D13G039500 Gossypium hirsutum
Gorai.003G024600 Gossypium raimondii
Gorai.004G143500 Gossypium raimondii
Gorai.004G200200 Gossypium raimondii
Gorai.005G237600 Gossypium raimondii
Gorai.007G213000 Gossypium raimondii
Gorai.008G075900 Gossypium raimondii
Gorai.011G105800 Gossypium raimondii
Gorai.013G044400 Gossypium raimondii
HanXRQChr03g0075831 Helianthus annuus
HanXRQChr03g0075851 Helianthus annuus
HanXRQChr04g0128171 Helianthus annuus
HanXRQChr09g0263841 Helianthus annuus
HanXRQChr10g0295421 Helianthus annuus
HanXRQChr12g0375661 Helianthus annuus
HanXRQChr12g0378821 Helianthus annuus
HanXRQChr14g0442811 Helianthus annuus
Haze_10091 Corylus avellana
Haze_15399 Corylus avellana
Hma1.2p1_0474F.1_g160440 Hydrangea macrophylla
HPP92_004225 Vanilla planifolia
HPP92_010967 Vanilla planifolia
HPP92_016388 Vanilla planifolia
Hund16324 Selenicereus undatus
Lalb_Chr09g0323171 Lupinus albus
Lalb_Chr09g0328361 Lupinus albus
Lalb_Chr16g0378531 Lupinus albus
Lalb_Chr16g0384761 Lupinus albus
Lj2g0010115 Lotus japonicus
Lj4A149T27 Lonicera japonica
Lj4g0026197 Lotus japonicus
Lj9A357T87 Lonicera japonica
Lsat_1_v5_gn_2_84120 Lactuca sativa
Lsat_1_v5_gn_3_90900 Lactuca sativa
Lsat_1_v5_gn_4_166460 Lactuca sativa
Lsat_1_v5_gn_7_86781 Lactuca sativa
Lsat_1_v5_gn_9_109660 Lactuca sativa
Manes.10G056800 Manihot esculenta
Manes.12G100600 Manihot esculenta
Manes.13G124400 Manihot esculenta
MBI03_g13468_MAGBIO Magnolia biondii
MBI14_g32391_MAGBIO Magnolia biondii
MD02G1171900 Malus domestica
MD05G1081800 Malus domestica
MD15G1283800 Malus domestica
Medtr4g085970 Medicago truncatula
Medtr5g017450 Medicago truncatula
MELO3C001078.2 Cucumis melo
MELO3C020877.2 Cucumis melo
Migut.B00354 Erythranthe guttata
Migut.N01185 Erythranthe guttata
MSTRG.23747 Avicennia marina
MSTRG.27727 Avicennia marina
Nitab4.5_0000749g0190 Nicotiana tabacum
Nitab4.5_0001070g0080 Nicotiana tabacum
Nitab4.5_0002016g0070 Nicotiana tabacum
Nitab4.5_0002543g0070 Nicotiana tabacum
Nitab4.5_0003080g0110 Nicotiana tabacum
Nitab4.5_0003503g0020 Nicotiana tabacum
Nitab4.5_0007480g0070 Nicotiana tabacum
Nitab4.5_0009939g0020 Nicotiana tabacum
Nitab4.5_0016393g0010 Nicotiana tabacum
Nn3g16319 Nelumbo nucifera
Nn5g30303 Nelumbo nucifera
Oeu007290.1 Olea europaea
Oeu013714.1 Olea europaea
Oeu031523.1 Olea europaea
Oeu031524.1 Olea europaea
Oeu050785.1 Olea europaea
Os02g0766600 Oryza sativa ssp. japonica
Peaxi162Scf00016g01911 Petunia axillaris
Peaxi162Scf00450g00417 Petunia axillaris
PGR102G0584 Punica granatum
PGR142G4284 Punica granatum
PGSC0003DMG400004022 Solanum tuberosum
Phvul.002G019000 Phaseolus vulgaris
Phvul.002G094700 Phaseolus vulgaris
Potri.005G138100 Populus trichocarpa
Potri.007G043900 Populus trichocarpa
Potri.009G101300 Populus trichocarpa
Prupe.7G133400 Prunus persica
Prupe.8G126400 Prunus persica
Psat2g166320 Pisum sativum
Psat7g123880 Pisum sativum
PSO541G0675 Papaver somniferum
PSO541G4445 Papaver somniferum
PSO675G7158 Papaver somniferum
PSO675G8701 Papaver somniferum
QL06p041391 Quercus lobata
QL11p035343 Quercus lobata
RcHm_v2.0_Chr2g0105661 Rosa chinensis
RcHm_v2.0_Chr6g0257581 Rosa chinensis
Rhsim10G0118200 Rhododendron simsii
Rhsim11G0165100 Rhododendron simsii
Sabra05G0112500 Salix brachista
Sabra07G0038600 Salix brachista
Sabra09G0077100 Salix brachista
SalBow3G0088 Salvia bowleyana
SalBow6G2396 Salvia bowleyana
Sc03g0001570 Simmondsia chinensis
Sed0011188 Sechium edule
Sed0015536 Sechium edule
Sed0019151 Sechium edule
SGA_v2.0_scaffold15G07301 Striga asiatica
SGA_v2.0_scaffold336G49162 Striga asiatica
SGA_v2.0_scaffold393G50691 Striga asiatica
SGA_v2.0_scaffold90G27638 Striga asiatica
Solyc02g090840.3 Solanum lycopersicum
Sopen02g035460 Solanum pennellii
Sp3g28880 Schrenkiella parvula
Sp5g11830 Schrenkiella parvula
Sp7g31730 Schrenkiella parvula
TAR376G0970 Trochodendron aralioides
TAR381G0679 Trochodendron aralioides
TAR626G1047 Trochodendron aralioides
TAR628G0789 Trochodendron aralioides
THA.LOC104807268 Tarenaya hassleriana
THA.LOC104819576 Tarenaya hassleriana
THA.LOC104821552 Tarenaya hassleriana
Thecc.01G055800 Theobroma cacao
Thecc.02G101500 Theobroma cacao
Thhalv10011124m.g Eutrema salsugineum
Thhalv10022992m.g Eutrema salsugineum
Thhalv10026462m.g Eutrema salsugineum
TPR.G12720 Trifolium pratense
TPR.G29522 Trifolium pratense
TWI09G0342 Tripterygium wilfordii
TWI31G1407 Tripterygium wilfordii
TWI73G0618 Tripterygium wilfordii
TWI79G0995 Tripterygium wilfordii
unitig_27.g25326 Utricularia gibba
unitig_699.g19566 Utricularia gibba
unitig_899.g14661 Utricularia gibba
vmacro02042 Vaccinium macrocarpon
vmacro05336 Vaccinium macrocarpon
vmacro17954 Vaccinium macrocarpon
VMungo0251G0158 Vigna mungo
VMungo1215G3359 Vigna mungo
Zm00001eb193640 Zea mays
Zm00001eb255960 Zea mays

User provided reference genes

Program Settings