Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p08730 Brassica napus
A09p42320 Brassica napus
Aa31LG1G17350 Aethionema arabicum
Aa31LG7G6380 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1576 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.3214 Anthoceros agrestis
Actinidia06631 Actinidia chinensis
Actinidia10344 Actinidia chinensis
Actinidia20085 Actinidia chinensis
Actinidia33124 Actinidia chinensis
Actinidia37406 Actinidia chinensis
Ah.03g146810 Amaranthus hybridus
Ah.05g169690 Amaranthus hybridus
AL1G35980 Arabidopsis lyrata
AL8G42010 Arabidopsis lyrata
Aqoxy6G00338 Aquilegia oxysepala
Aqoxy6G00719 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8GA97S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BL38BA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C5EDTH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G1UYRW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S2AXZ8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SH9IX0 Arachis hypogaea
AT1G22460 Arabidopsis thaliana
AT5G64600 Arabidopsis thaliana
ATR0684G012 Amborella trichopoda
ATR1136G122 Amborella trichopoda
Atru.chr13.1120 Acer truncatum
Atru.chr4.917 Acer truncatum
AUR62003590 Chenopodium quinoa
AUR62017903 Chenopodium quinoa
AUR62018968 Chenopodium quinoa
AUR62027810 Chenopodium quinoa
AUR62043563 Chenopodium quinoa
BcaB04g19976 Brassica carinata
BcaB04g19977 Brassica carinata
BcaB07g32257 Brassica carinata
BcaC04g23308 Brassica carinata
BcaC05g26171 Brassica carinata
BolC5t30851H Brassica oleracea
BolC9t53895H Brassica oleracea
BraA09t36522Z Brassica rapa
BraA09t39713Z Brassica rapa
C05p21560 Brassica napus
C09p09870 Brassica napus
CAN.G1032.1 Capsicum annuum
CAN.G12.17 Capsicum annuum
CAN.G857.12 Capsicum annuum
CANSAT01G2253 Cannabis sativa
CANSAT25G1638 Cannabis sativa
CARHR022800 Cardamine hirsuta
CARHR278560 Cardamine hirsuta
Carub.0001s2199 Capsella rubella
Carub.0008s2539 Capsella rubella
Ca_05313_v3 Cicer arietinum L.
Ca_16038_v3 Cicer arietinum L.
Ca_16935_v3 Cicer arietinum L.
CBR_g38891 Chara braunii
Cc07_g18260 Coffea canephora
Cc10_g06710 Coffea canephora
CDE02G1658 Ceratophyllum demersum
CDE02G3036 Ceratophyllum demersum
CDE03G0390 Ceratophyllum demersum
CDE06G2228 Ceratophyllum demersum
Cfa017890 Carpinus fangiana
Ciclev10000706m.g Citrus clementina
Ciclev10000858m.g Citrus clementina
Ciclev10013940m.g Citrus clementina
CiPaw.03G122900 Carya illinoinensis
CiPaw.15G046200 Carya illinoinensis
CiPaw.16G033100 Carya illinoinensis
ClCG01G015440 Citrullus lanatus
ClCG08G011300 Citrullus lanatus
ClCG11G014270 Citrullus lanatus
COL.COLO4_12013 Corchorus olitorius
COL.COLO4_35700 Corchorus olitorius
Cpa.g.sc36.177 Carica papaya
Cpa.g.sc382.1 Carica papaya
CsaV3_2G029870 Cucumis sativus L.
CsaV3_3G047660 Cucumis sativus L.
CsaV3_6G041680 Cucumis sativus L.
CSS0007553 Camellia sinensis var. sinensis
CSS0007840 Camellia sinensis var. sinensis
CSS0008516 Camellia sinensis var. sinensis
CSS0010435 Camellia sinensis var. sinensis
CSS0042131 Camellia sinensis var. sinensis
DCAR_012885 Daucus carota
Dinv24340 Davidia involucrata
Duzib041G0195 Durio zibethinus
Duzib093G1793 Durio zibethinus
Duzib147G1226 Durio zibethinus
ECA246G2791 Erigeron canadensis
ECA247G0965 Erigeron canadensis
EL10Ac1g01149 Beta vulgaris
EL10Ac6g15285 Beta vulgaris
Eucgr.B00039 Eucalyptus grandis
Eucgr.F00374 Eucalyptus grandis
Eucgr.I00223 Eucalyptus grandis
FAN04G0158 Fragaria x ananassa
FAN04G2113 Fragaria x ananassa
FAN08G3484 Fragaria x ananassa
FAN13G3047 Fragaria x ananassa
FAN18G1411 Fragaria x ananassa
FAN19G0405 Fragaria x ananassa
FAN23G1879 Fragaria x ananassa
FAN23G2180 Fragaria x ananassa
FAN26G0939 Fragaria x ananassa
FAN28G1459 Fragaria x ananassa
FvH4_1g24200 Fragaria vesca
FvH4_5g36600 Fragaria vesca
Glyma.02G209100 Glycine max
Glyma.04G099300 Glycine max
Glyma.04G213700 Glycine max
Glyma.06G101200 Glycine max
Glyma.06G152600 Glycine max
Glyma.14G177300 Glycine max
Gohir.A05G265900 Gossypium hirsutum
Gohir.A06G033700 Gossypium hirsutum
Gohir.A11G020900 Gossypium hirsutum
Gohir.D05G268000 Gossypium hirsutum
Gohir.D06G034600 Gossypium hirsutum
Gohir.D11G020600 Gossypium hirsutum
Gorai.007G021900 Gossypium raimondii
Gorai.009G280200 Gossypium raimondii
Gorai.010G038100 Gossypium raimondii
GSVIVG01009080001 Vitis vinifera
GSVIVG01026498001 Vitis vinifera
HanXRQChr02g0040291 Helianthus annuus
HanXRQChr05g0149641 Helianthus annuus
HanXRQChr07g0192721 Helianthus annuus
Haze_18271 Corylus avellana
Haze_18275 Corylus avellana
Haze_25211 Corylus avellana
Hma1.2p1_0047F.1_g027860 Hydrangea macrophylla
Hma1.2p1_1148F.1_g261610 Hydrangea macrophylla
HPP92_011191 Vanilla planifolia
HPP92_011197 Vanilla planifolia
HPP92_011417 Vanilla planifolia
Hund10958 Selenicereus undatus
Hund16888 Selenicereus undatus
Hund26986 Selenicereus undatus
Lalb_Chr08g0238411 Lupinus albus
Lalb_Chr08g0238421 Lupinus albus
Lalb_Chr08g0242171 Lupinus albus
Lalb_Chr10g0102521 Lupinus albus
Lalb_Chr11g0065271 Lupinus albus
Lalb_Chr17g0344291 Lupinus albus
Lj1g0005163 Lotus japonicus
Lj1g0009652 Lotus japonicus
Lj1g0014604 Lotus japonicus
Lj2A605G53 Lonicera japonica
Lj4A726G67 Lonicera japonica
Lj4A97T73 Lonicera japonica
Lsat_1_v5_gn_1_3200 Lactuca sativa
Lsat_1_v5_gn_5_42701 Lactuca sativa
Manes.02G149400 Manihot esculenta
Manes.12G154200 Manihot esculenta
Manes.18G064150 Manihot esculenta
Mapoly0014s0149 Marchantia polymorpha
Mapoly0103s0076 Marchantia polymorpha
MBI02_g33227_MAGBIO Magnolia biondii
MBI05_g22322_MAGBIO Magnolia biondii
MBI08_g37822_MAGBIO Magnolia biondii
MD08G1188000 Malus domestica
MD08G1188100 Malus domestica
MD15G1374000 Malus domestica
MD15G1374100 Malus domestica
Medtr3g096020 Medicago truncatula
Medtr3g099480 Medicago truncatula
Medtr5g064620 Medicago truncatula
MELO3C003558.2 Cucumis melo
MELO3C008053.2 Cucumis melo
MELO3C011046.2 Cucumis melo
Migut.L00889 Erythranthe guttata
MSTRG.15577 Avicennia marina
MSTRG.22168 Avicennia marina
Nitab4.5_0000786g0060 Nicotiana tabacum
Nitab4.5_0000805g0110 Nicotiana tabacum
Nitab4.5_0001896g0100 Nicotiana tabacum
Nitab4.5_0002434g0030 Nicotiana tabacum
Nitab4.5_0010488g0050 Nicotiana tabacum
Nitab4.5_0011375g0030 Nicotiana tabacum
Nn1g05451 Nelumbo nucifera
Nn5g28589 Nelumbo nucifera
Nn5g30006 Nelumbo nucifera
Oeu007453.2 Olea europaea
Oeu016896.2 Olea europaea
Os06g0219400 Oryza sativa ssp. japonica
Os12g0190100 Oryza sativa ssp. japonica
Peaxi162Scf00030g02223 Petunia axillaris
Peaxi162Scf00160g10124 Petunia axillaris
Peaxi162Scf00589g00222 Petunia axillaris
PGR042G0574 Punica granatum
PGR119G1294 Punica granatum
PGSC0003DMG400017764 Solanum tuberosum
PGSC0003DMG400030835 Solanum tuberosum
Phvul.008G176800 Phaseolus vulgaris
Phvul.009G032800 Phaseolus vulgaris
Phvul.009G149700 Phaseolus vulgaris
Potri.002G100400 Populus trichocarpa
Potri.005G059600 Populus trichocarpa
Potri.005G161800 Populus trichocarpa
Pp3c3_20980 Physcomitrium patens
Pp3c6_1830 Physcomitrium patens
Pp3c6_950 Physcomitrium patens
Prupe.1G522600 Prunus persica
Psat2g069680 Pisum sativum
Psat5g060160 Pisum sativum
PSO541G5106 Papaver somniferum
PSO541G5458 Papaver somniferum
PSO675G8678 Papaver somniferum
PSO675G9192 Papaver somniferum
QL02p002473 Quercus lobata
QL02p002503 Quercus lobata
QL06p029001 Quercus lobata
QL06p029007 Quercus lobata
RcHm_v2.0_Chr2g0120631 Rosa chinensis
RcHm_v2.0_Chr2g0120641 Rosa chinensis
RcHm_v2.0_Chr7g0242381 Rosa chinensis
Rhsim07G0205100 Rhododendron simsii
Sabra02G0078600 Salix brachista
Sabra05G0050500 Salix brachista
SalBow2G0700 Salvia bowleyana
SalBow7G1576 Salvia bowleyana
Sc01g0000790 Simmondsia chinensis
Sc07g0001720 Simmondsia chinensis
Sc26g0000190 Simmondsia chinensis
Sed0003081 Sechium edule
Sed0016455 Sechium edule
Sed0019731 Sechium edule
SEGI_04458 Sequoiadendron giganteum
SEGI_30537 Sequoiadendron giganteum
SGA_v2.0_scaffold28G11903 Striga asiatica
SHI11476 Sapria himalayana
SMO116G0332 Selaginella moellendorffii
SMO144G0172 Selaginella moellendorffii
Solyc04g074670.4 Solanum lycopersicum
Solyc11g005870.2 Solanum lycopersicum
Sopen04g029640 Solanum pennellii
Sopen11g001820 Solanum pennellii
Sp1g19940 Schrenkiella parvula
Sp2g27660 Schrenkiella parvula
TAR381G0765 Trochodendron aralioides
TAR381G1004 Trochodendron aralioides
TAR381G1259 Trochodendron aralioides
TAR625G0394 Trochodendron aralioides
THA.LOC104799536 Tarenaya hassleriana
THA.LOC104810657 Tarenaya hassleriana
Thecc.01G129500 Theobroma cacao
Thecc.08G102600 Theobroma cacao
Thhalv10004008m.g Eutrema salsugineum
Thhalv10007232m.g Eutrema salsugineum
TPR.G24260 Trifolium pratense
TPR.G31380 Trifolium pratense
TPR.G34639 Trifolium pratense
TWI56G1331 Tripterygium wilfordii
TWI79G1727 Tripterygium wilfordii
unitig_32.g11834 Utricularia gibba
unitig_8.g4844 Utricularia gibba
vmacro04710 Vaccinium macrocarpon
vmacro12814 Vaccinium macrocarpon
vmacro21292 Vaccinium macrocarpon
VMungo0647G2127 Vigna mungo
VMungo1309G0739 Vigna mungo
VMungo1309G1754 Vigna mungo
Zm00001eb138670 Zea mays
Zm00001eb279330 Zea mays

User provided reference genes

Program Settings