Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p00730 Brassica napus
Aa31LG10G14220 Aethionema arabicum
Aa31LG1G28410 Aethionema arabicum
Actinidia02541 Actinidia chinensis
Actinidia06397 Actinidia chinensis
Actinidia07530 Actinidia chinensis
Actinidia18503 Actinidia chinensis
Actinidia21351 Actinidia chinensis
Ah.02g112670 Amaranthus hybridus
Ah.07g203730 Amaranthus hybridus
Ah.11g045830 Amaranthus hybridus
AL4G46570 Arabidopsis lyrata
AL5G42210 Arabidopsis lyrata
Aqoxy5G02784 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5CG51V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W095Z9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XS47FH Arachis hypogaea
AT2G47070 Arabidopsis thaliana
AT3G60030 Arabidopsis thaliana
ATR0796G210 Amborella trichopoda
Atru.chr4.3133 Acer truncatum
Atru.chr5.894 Acer truncatum
Atru.chr5.895 Acer truncatum
AUR62002563 Chenopodium quinoa
AUR62011728 Chenopodium quinoa
AUR62024559 Chenopodium quinoa
AUR62024560 Chenopodium quinoa
AUR62029983 Chenopodium quinoa
AUR62029984 Chenopodium quinoa
BcaB01g03184 Brassica carinata
BcaB02g08804 Brassica carinata
BcaC02g09025 Brassica carinata
BolC4t21727H Brassica oleracea
BraA05t19077Z Brassica rapa
C04p00890 Brassica napus
CAN.G100.32 Capsicum annuum
CAN.G305.41 Capsicum annuum
CANSAT25G1789 Cannabis sativa
CANSAT78G0427 Cannabis sativa
CARHR142430 Cardamine hirsuta
CARHR170330 Cardamine hirsuta
Carub.0004s2981 Capsella rubella
Carub.0005s2676 Capsella rubella
Ca_02369_v3 Cicer arietinum L.
Ca_10248_v3 Cicer arietinum L.
Cc01_g21870 Coffea canephora
Cc03_g00210 Coffea canephora
CDE11G1087 Ceratophyllum demersum
Cfa004887 Carpinus fangiana
Cfa021286 Carpinus fangiana
Ciclev10004227m.g Citrus clementina
Ciclev10018697m.g Citrus clementina
CiPaw.01G130200 Carya illinoinensis
CiPaw.02G070500 Carya illinoinensis
CiPaw.07G123900 Carya illinoinensis
CiPaw.08G084300 Carya illinoinensis
ClCG10G011820 Citrullus lanatus
COL.COLO4_23150 Corchorus olitorius
Cpa.g.sc146.32 Carica papaya
Cpa.g.sc181.10 Carica papaya
Cpa.g.sc181.11 Carica papaya
CsaV3_3G031570 Cucumis sativus L.
CSS0001928 Camellia sinensis var. sinensis
CSS0008353 Camellia sinensis var. sinensis
CSS0019036 Camellia sinensis var. sinensis
CSS0024125 Camellia sinensis var. sinensis
CSS0037020 Camellia sinensis var. sinensis
CSS0037275 Camellia sinensis var. sinensis
CSS0037326 Camellia sinensis var. sinensis
DCAR_002547 Daucus carota
DCAR_026953 Daucus carota
Dinv12094 Davidia involucrata
Dinv18029 Davidia involucrata
Dinv29517 Davidia involucrata
Dinv33162 Davidia involucrata
Duzib133G0518 Durio zibethinus
Duzib138G1731 Durio zibethinus
Duzib211G0455 Durio zibethinus
Duzib212G0746 Durio zibethinus
ECA246G0490 Erigeron canadensis
EL10Ac2g03657 Beta vulgaris
EL10Ac3g06264 Beta vulgaris
EL10Ac4g09048 Beta vulgaris
EL10Ac5g10644 Beta vulgaris
Eucgr.A01019 Eucalyptus grandis
Eucgr.H04114 Eucalyptus grandis
FAN07G1875 Fragaria x ananassa
FAN07G2474 Fragaria x ananassa
FAN12G2890 Fragaria x ananassa
FAN12G3930 Fragaria x ananassa
FAN17G0146 Fragaria x ananassa
FAN17G2719 Fragaria x ananassa
FvH4_4g21420 Fragaria vesca
Glyma.02G008600 Glycine max
Glyma.07G234200 Glycine max
Glyma.09G082000 Glycine max
Glyma.10G009200 Glycine max
Glyma.15G190200 Glycine max
Glyma.17G039600 Glycine max
Gohir.A02G057700 Gossypium hirsutum
Gohir.A08G037400 Gossypium hirsutum
Gohir.A11G103700 Gossypium hirsutum
Gohir.A12G120900 Gossypium hirsutum
Gohir.D02G063500 Gossypium hirsutum
Gohir.D08G047700 Gossypium hirsutum
Gohir.D11G108100 Gossypium hirsutum
Gohir.D12G124700 Gossypium hirsutum
Gorai.004G047200 Gossypium raimondii
Gorai.005G071400 Gossypium raimondii
Gorai.007G116100 Gossypium raimondii
Gorai.008G135700 Gossypium raimondii
GSVIVG01017678001 Vitis vinifera
GSVIVG01028208001 Vitis vinifera
HanXRQChr05g0148371 Helianthus annuus
Haze_00782 Corylus avellana
Haze_00787 Corylus avellana
Haze_05125 Corylus avellana
Hma1.2p1_0484F.1_g162900 Hydrangea macrophylla
HPP92_002652 Vanilla planifolia
HPP92_002664 Vanilla planifolia
HPP92_002688 Vanilla planifolia
HPP92_012770 Vanilla planifolia
Hund11631 Selenicereus undatus
Hund12248 Selenicereus undatus
Lalb_Chr02g0147041 Lupinus albus
Lalb_Chr06g0167101 Lupinus albus
Lalb_Chr08g0233051 Lupinus albus
Lalb_Chr11g0073521 Lupinus albus
Lalb_Chr12g0200621 Lupinus albus
Lalb_Chr21g0309801 Lupinus albus
Lj1C10G2 Lonicera japonica
Lj1g0013691 Lotus japonicus
Lj3A839T54 Lonicera japonica
Lj4g0009332 Lotus japonicus
Lj4g0016795 Lotus japonicus
Lj4g0017967 Lotus japonicus
Lj5g0024810 Lotus japonicus
Lj6C699T17 Lonicera japonica
Lj6g0009513 Lotus japonicus
Lsat_1_v5_gn_1_39821 Lactuca sativa
Lsat_1_v5_gn_6_117840 Lactuca sativa
Manes.01G233400 Manihot esculenta
Manes.03G211200 Manihot esculenta
Manes.05G010400 Manihot esculenta
MBI10_g36391_MAGBIO Magnolia biondii
MBI19_g32725_MAGBIO Magnolia biondii
MBI19_g32726_MAGBIO Magnolia biondii
MD13G1141300 Malus domestica
MD13G1141400 Malus domestica
MD16G1137600 Malus domestica
MD16G1137700 Malus domestica
Medtr1g086250 Medicago truncatula
Medtr2g046550 Medicago truncatula
Medtr7g110320 Medicago truncatula
MELO3C012909.2 Cucumis melo
Migut.D00024 Erythranthe guttata
Migut.G00007 Erythranthe guttata
Migut.N00008 Erythranthe guttata
Migut.O00397 Erythranthe guttata
MSTRG.18064 Avicennia marina
MSTRG.21745 Avicennia marina
MSTRG.24838 Avicennia marina
Nitab4.5_0000222g0290 Nicotiana tabacum
Nitab4.5_0000225g0020 Nicotiana tabacum
Nitab4.5_0000363g0110 Nicotiana tabacum
Nitab4.5_0000745g0150 Nicotiana tabacum
Nitab4.5_0002994g0100 Nicotiana tabacum
Nitab4.5_0003324g0070 Nicotiana tabacum
Nitab4.5_0004298g0020 Nicotiana tabacum
Nitab4.5_0004298g0030 Nicotiana tabacum
Nitab4.5_0006025g0040 Nicotiana tabacum
Nitab4.5_0006025g0050 Nicotiana tabacum
Nitab4.5_0008312g0040 Nicotiana tabacum
Nn3g21895 Nelumbo nucifera
Nn4g25403 Nelumbo nucifera
Oeu002572.1 Olea europaea
Oeu002573.1 Olea europaea
Oeu007533.1 Olea europaea
Oeu012216.3 Olea europaea
Oeu020280.2 Olea europaea
Oeu034899.1 Olea europaea
Oeu038065.1 Olea europaea
Os01g0292900 Oryza sativa ssp. japonica
Os03g0833300 Oryza sativa ssp. japonica
Peaxi162Scf00058g02017 Petunia axillaris
Peaxi162Scf00126g01131 Petunia axillaris
Peaxi162Scf00164g00523 Petunia axillaris
Peaxi162Scf00919g00310 Petunia axillaris
PGR004G0140 Punica granatum
PGR042G3374 Punica granatum
PGSC0003DMG400005196 Solanum tuberosum
PGSC0003DMG400027151 Solanum tuberosum
Phvul.003G120700 Phaseolus vulgaris
Phvul.007G210600 Phaseolus vulgaris
Phvul.009G219200 Phaseolus vulgaris
Potri.002G188700 Populus trichocarpa
Potri.008G098600 Populus trichocarpa
Potri.010G154000 Populus trichocarpa
Potri.014G114300 Populus trichocarpa
Pp3c17_12760 Physcomitrium patens
Pp3c3_23940 Physcomitrium patens
Prupe.1G106500 Prunus persica
Prupe.1G106600 Prunus persica
Psat1g018120 Pisum sativum
Psat3g018160 Pisum sativum
Psat6g160520 Pisum sativum
PSO210G3653 Papaver somniferum
PSO761G0665 Papaver somniferum
QL06p014060 Quercus lobata
QL12p034448 Quercus lobata
RcHm_v2.0_Chr1g0333221 Rosa chinensis
RcHm_v2.0_Chr4g0427341 Rosa chinensis
RcHm_v2.0_Chr4g0427351 Rosa chinensis
RcHm_v2.0_Chr7g0225661 Rosa chinensis
Rhsim04G0247600 Rhododendron simsii
Rhsim13G0000500 Rhododendron simsii
Sabra02G0166600 Salix brachista
Sabra08G0074600 Salix brachista
Sabra10G0118600 Salix brachista
Sabra14G0084400 Salix brachista
SalBow6G7168 Salvia bowleyana
SalBow8G0617 Salvia bowleyana
Sc17g0000130 Simmondsia chinensis
Sc25g0001760 Simmondsia chinensis
Sed0010875 Sechium edule
Sed0026865 Sechium edule
SEGI_03728 Sequoiadendron giganteum
SEGI_16279 Sequoiadendron giganteum
SGA_v2.0_scaffold157G37380 Striga asiatica
SGA_v2.0_scaffold64G22031 Striga asiatica
SGA_v2.0_scaffold80G25685 Striga asiatica
SMO367G0900 Selaginella moellendorffii
Solyc01g068100.4 Solanum lycopersicum
Solyc05g053240.4 Solanum lycopersicum
Sopen01g030050 Solanum pennellii
Sopen05g031750 Solanum pennellii
Sp4g29060 Schrenkiella parvula
TAR362G1270 Trochodendron aralioides
TAR365G1217 Trochodendron aralioides
TAR633G1629 Trochodendron aralioides
TAR636G1610 Trochodendron aralioides
THA.LOC104827653 Tarenaya hassleriana
THA.LOC104827654 Tarenaya hassleriana
THA.LOC104827691 Tarenaya hassleriana
Thecc.01G323200 Theobroma cacao
Thecc.04G311800 Theobroma cacao
Thecc.06G088200 Theobroma cacao
Thhalv10001295m.g Eutrema salsugineum
TPR.G25933 Trifolium pratense
TPR.G3043 Trifolium pratense
TPR.G4116 Trifolium pratense
TWI14G0396 Tripterygium wilfordii
TWI59G0684 Tripterygium wilfordii
unitig_22.g6351 Utricularia gibba
unitig_26.g10612 Utricularia gibba
unitig_749.g13352 Utricularia gibba
unitig_8.g3102 Utricularia gibba
vmacro02366 Vaccinium macrocarpon
vmacro08005 Vaccinium macrocarpon
VMungo0464G1555 Vigna mungo
VMungo0720G0292 Vigna mungo
VMungo1215G1958 Vigna mungo
VMungo1309G1463 Vigna mungo
Zm00001eb063390 Zea mays
Zm00001eb129860 Zea mays
Zm00001eb211350 Zea mays
Zm00001eb332190 Zea mays

User provided reference genes

Program Settings