Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p01950 Brassica napus
A03p06000 Brassica napus
A10p32170 Brassica napus
Aa31LG11G7630 Aethionema arabicum
Actinidia06277 Actinidia chinensis
Ah.10g030870 Amaranthus hybridus
AL1G12230 Arabidopsis lyrata
AL1G13500 Arabidopsis lyrata
AL6G13550 Arabidopsis lyrata
AL6G24080 Arabidopsis lyrata
Aqoxy1G03235 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0YJG6G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6Q660G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C7PAZI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J6EHGP Arachis hypogaea
AT1G76705 Arabidopsis thaliana
AT5G03960 Arabidopsis thaliana
AT5G13460 Arabidopsis thaliana
ATR0721G167 Amborella trichopoda
Atru.chr1.1185 Acer truncatum
Atru.chr11.2560 Acer truncatum
Atru.chr11.2561 Acer truncatum
AUR62024525 Chenopodium quinoa
AUR62026117 Chenopodium quinoa
AUR62030538 Chenopodium quinoa
AUR62037247 Chenopodium quinoa
BcaB01g05357 Brassica carinata
BcaB05g21791 Brassica carinata
BcaC03g12969 Brassica carinata
BcaC04g19114 Brassica carinata
BcaC06g32098 Brassica carinata
BcaNung01152 Brassica carinata
BcaNung01886 Brassica carinata
BolC2t06129H Brassica oleracea
BolC2t06558H Brassica oleracea
BolC3t13202H Brassica oleracea
BolC9t60027H Brassica oleracea
BolC9t60028H Brassica oleracea
BolC9t60033H Brassica oleracea
BraA02t04795Z Brassica rapa
BraA02t05168Z Brassica rapa
BraA03t09937Z Brassica rapa
BraA10t45261Z Brassica rapa
C02p01640 Brassica napus
C02p06170 Brassica napus
C03p07040 Brassica napus
C09p72980 Brassica napus
CAN.G1237.7 Capsicum annuum
CAN.G410.28 Capsicum annuum
CANSAT80G0587 Cannabis sativa
CARHR199970 Cardamine hirsuta
CARHR209320 Cardamine hirsuta
Carub.0006s0290 Capsella rubella
Carub.0006s1162 Capsella rubella
Ca_02375_v3 Cicer arietinum L.
Ca_12265_v3 Cicer arietinum L.
Ca_26246_v3 Cicer arietinum L.
Ca_30549_v3 Cicer arietinum L.
Cc02_g30120 Coffea canephora
Cc06_g18300 Coffea canephora
CDE08G0133 Ceratophyllum demersum
CDE09G0713 Ceratophyllum demersum
Cfa016757 Carpinus fangiana
Ciclev10005065m.g Citrus clementina
Ciclev10031481m.g Citrus clementina
CiPaw.09G041400 Carya illinoinensis
CiPaw.09G041800 Carya illinoinensis
CiPaw.14G005000 Carya illinoinensis
ClCG01G007590 Citrullus lanatus
ClCG10G015630 Citrullus lanatus
COL.COLO4_19337 Corchorus olitorius
COL.COLO4_19338 Corchorus olitorius
COL.COLO4_21310 Corchorus olitorius
Cpa.g.sc120.3 Carica papaya
Cpa.g.sc197.18 Carica papaya
CsaV3_5G024600 Cucumis sativus L.
CSS0001203 Camellia sinensis var. sinensis
CSS0025309 Camellia sinensis var. sinensis
DCAR_003234 Daucus carota
DCAR_020520 Daucus carota
DCAR_022359 Daucus carota
DCAR_031820 Daucus carota
DCAR_032387 Daucus carota
Dinv05031 Davidia involucrata
Dinv18685 Davidia involucrata
Dinv32061 Davidia involucrata
Dinv39674 Davidia involucrata
Duzib106G0915 Durio zibethinus
Duzib114G1024 Durio zibethinus
Duzib128G0354 Durio zibethinus
EL10Ac2g02884 Beta vulgaris
EL10Ac3g07154 Beta vulgaris
Eucgr.J01207 Eucalyptus grandis
Eucgr.K01575 Eucalyptus grandis
FAN01G1538 Fragaria x ananassa
FAN03G1059 Fragaria x ananassa
FAN05G2634 Fragaria x ananassa
FAN06G2001 Fragaria x ananassa
FAN09G2368 Fragaria x ananassa
FAN10G1302 Fragaria x ananassa
FAN14G0802 Fragaria x ananassa
FvH4_6g24720 Fragaria vesca
FvH4_7g02140 Fragaria vesca
Glyma.04G154200 Glycine max
Glyma.09G225300 Glycine max
Glyma.10G106000 Glycine max
Glyma.11G149200 Glycine max
Glyma.12G011600 Glycine max
Gohir.A06G158700 Gossypium hirsutum
Gohir.A09G120100 Gossypium hirsutum
Gohir.A10G242300 Gossypium hirsutum
Gohir.A13G011300 Gossypium hirsutum
Gohir.D06G164600 Gossypium hirsutum
Gohir.D09G116200 Gossypium hirsutum
Gohir.D10G254300 Gossypium hirsutum
Gohir.D13G012000 Gossypium hirsutum
Gorai.006G134500 Gossypium raimondii
Gorai.010G192000 Gossypium raimondii
Gorai.011G295300 Gossypium raimondii
Gorai.013G013200 Gossypium raimondii
GSVIVG01000865001 Vitis vinifera
GSVIVG01033546001 Vitis vinifera
GSVIVG01033548001 Vitis vinifera
HanXRQChr06g0176851 Helianthus annuus
HanXRQChr16g0525511 Helianthus annuus
HanXRQChr17g0565001 Helianthus annuus
Haze_03104 Corylus avellana
Haze_19744 Corylus avellana
Hma1.2p1_0579F.1_g182690 Hydrangea macrophylla
Hma1.2p1_2420F.1_g321860 Hydrangea macrophylla
HPP92_014157 Vanilla planifolia
HPP92_014177 Vanilla planifolia
Hund13319 Selenicereus undatus
Hund15704 Selenicereus undatus
Hund24651 Selenicereus undatus
Lalb_Chr01g0000581 Lupinus albus
Lalb_Chr06g0173521 Lupinus albus
Lalb_Chr20g0110331 Lupinus albus
Lalb_Chr25g0282711 Lupinus albus
Lj1C1123G4 Lonicera japonica
Lj3g0014501 Lotus japonicus
Lj3g0020554 Lotus japonicus
Lj5g0017611 Lotus japonicus
Lj9C645T20 Lonicera japonica
Lsat_1_v5_gn_4_30301 Lactuca sativa
Lsat_1_v5_gn_8_83280 Lactuca sativa
Manes.04G163400 Manihot esculenta
Manes.08G054200 Manihot esculenta
Manes.09G011664 Manihot esculenta
Manes.09G011853 Manihot esculenta
Manes.09G014980 Manihot esculenta
Manes.09G015700 Manihot esculenta
Manes.09G016644 Manihot esculenta
Manes.09G016741 Manihot esculenta
Manes.11G002000 Manihot esculenta
MBI13_g30228_MAGBIO Magnolia biondii
MD02G1297300 Malus domestica
MD14G1079600 Malus domestica
Medtr0047s0040 Medicago truncatula
Medtr1g051810 Medicago truncatula
Medtr7g114700 Medicago truncatula
MELO3C005137.2 Cucumis melo
MELO3C009812.2 Cucumis melo
Migut.B01194 Erythranthe guttata
Migut.J01710 Erythranthe guttata
Migut.K00120 Erythranthe guttata
MSTRG.10799 Avicennia marina
MSTRG.16999 Avicennia marina
MSTRG.19834 Avicennia marina
MSTRG.20537 Avicennia marina
Nitab4.5_0000082g0330 Nicotiana tabacum
Nitab4.5_0000316g0270 Nicotiana tabacum
Nitab4.5_0000826g0150 Nicotiana tabacum
Nitab4.5_0001249g0060 Nicotiana tabacum
Nitab4.5_0001618g0240 Nicotiana tabacum
Nitab4.5_0001775g0070 Nicotiana tabacum
Nn2g15072 Nelumbo nucifera
Nn7g36436 Nelumbo nucifera
Oeu024769.1 Olea europaea
Oeu041989.2 Olea europaea
Oeu047624.2 Olea europaea
Os03g0355700 Oryza sativa ssp. japonica
Os05g0100008 Oryza sativa ssp. japonica
Peaxi162Scf00002g03614 Petunia axillaris
Peaxi162Scf00087g00014 Petunia axillaris
Peaxi162Scf00130g00925 Petunia axillaris
PGR044G2679 Punica granatum
PGR142G0532 Punica granatum
PGSC0003DMG400006823 Solanum tuberosum
PGSC0003DMG400006824 Solanum tuberosum
PGSC0003DMG400008172 Solanum tuberosum
PGSC0003DMG400012720 Solanum tuberosum
Phvul.005G033800 Phaseolus vulgaris
Phvul.007G249900 Phaseolus vulgaris
Phvul.011G014100 Phaseolus vulgaris
Potri.001G021000 Populus trichocarpa
Potri.006G046000 Populus trichocarpa
Potri.016G042700 Populus trichocarpa
Prupe.2G026800 Prunus persica
Prupe.7G050600 Prunus persica
Psat0s5573g0080 Pisum sativum
Psat6g117120 Pisum sativum
Psat7g169560 Pisum sativum
QL04p012299 Quercus lobata
QL04p012302 Quercus lobata
QL04p012356 Quercus lobata
QL04p012360 Quercus lobata
QL04p012371 Quercus lobata
QL04p012885 Quercus lobata
QL04p012945 Quercus lobata
QL04p012977 Quercus lobata
QL04p012988 Quercus lobata
QL07p005292 Quercus lobata
QL07p005574 Quercus lobata
QL93p2000_0053 Quercus lobata
RcHm_v2.0_Chr1g0319351 Rosa chinensis
RcHm_v2.0_Chr3g0484271 Rosa chinensis
Rhsim03G0030100 Rhododendron simsii
Rhsim03G0030700 Rhododendron simsii
Rhsim07G0061700 Rhododendron simsii
Sabra01G0015700 Salix brachista
Sabra06G0031600 Salix brachista
SalBow1G6573 Salvia bowleyana
SalBow6G3254 Salvia bowleyana
SalBow6G3640 Salvia bowleyana
Sc11g0006800 Simmondsia chinensis
Sc13g0001530 Simmondsia chinensis
Sed0009297 Sechium edule
Sed0016782 Sechium edule
Sed0019433 Sechium edule
Sed0022415 Sechium edule
SGA_v2.0_scaffold105G30362 Striga asiatica
SGA_v2.0_scaffold94G28515 Striga asiatica
Solyc01g088250.4 Solanum lycopersicum
Solyc04g016480.3 Solanum lycopersicum
Solyc10g079240.2 Solanum lycopersicum
Sopen01g035080 Solanum pennellii
Sopen04g008560 Solanum pennellii
Sopen10g029890 Solanum pennellii
Sp6g30560 Schrenkiella parvula
Sp6g38790 Schrenkiella parvula
TAR623G1675 Trochodendron aralioides
THA.LOC104816672 Tarenaya hassleriana
THA.LOC104819114 Tarenaya hassleriana
THA.LOC104823218 Tarenaya hassleriana
THA.LOC104826707 Tarenaya hassleriana
Thecc.05G145700 Theobroma cacao
Thecc.10G003100 Theobroma cacao
Thhalv10013564m.g Eutrema salsugineum
Thhalv10013765m.g Eutrema salsugineum
TPR.G20246 Trifolium pratense
TPR.G20585 Trifolium pratense
TPR.G3926 Trifolium pratense
TPR.G667 Trifolium pratense
TPR.G668 Trifolium pratense
TWI38G0747 Tripterygium wilfordii
TWI53G1812 Tripterygium wilfordii
TWI77G0232 Tripterygium wilfordii
unitig_0.g1390 Utricularia gibba
unitig_26.g8825 Utricularia gibba
unitig_750.g28442 Utricularia gibba
vmacro13719 Vaccinium macrocarpon
vmacro21957 Vaccinium macrocarpon
VMungo0720G0783 Vigna mungo
VMungo1080G0683 Vigna mungo
VMungo1127G1204 Vigna mungo
Zm00001eb017140 Zea mays

User provided reference genes

Program Settings