Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p44340 Brassica napus
A07p17040 Brassica napus
Aa31LG1G15410 Aethionema arabicum
Actinidia12233 Actinidia chinensis
Actinidia15269 Actinidia chinensis
Actinidia22601 Actinidia chinensis
Actinidia30863 Actinidia chinensis
Actinidia30982 Actinidia chinensis
Ah.03g144360 Amaranthus hybridus
AL8G44550 Arabidopsis lyrata
Aqoxy6G00885 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.04JW1L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.22T8QA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.24YBJ7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3Z0Y0Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L4Z9YE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LP09XA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MVCN72 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UR4HR3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZVA9BY Arachis hypogaea
AT5G66850 Arabidopsis thaliana
ATR0225G027 Amborella trichopoda
Atru.chr13.611 Acer truncatum
Atru.chr3.413 Acer truncatum
AUR62001960 Chenopodium quinoa
AUR62003846 Chenopodium quinoa
BcaB02g09978 Brassica carinata
BcaB06g27945 Brassica carinata
BcaB07g29651 Brassica carinata
BcaC03g18396 Brassica carinata
BcaC06g34758 Brassica carinata
BolC2t12534H Brassica oleracea
BolC7t43018H Brassica oleracea
BraA02t09351Z Brassica rapa
BraA07t29431Z Brassica rapa
C02p64720 Brassica napus
C04p53460 Brassica napus
C07p24900 Brassica napus
CAN.G1422.1 Capsicum annuum
CAN.G371.62 Capsicum annuum
CAN.G470.8 Capsicum annuum
CAN.G836.58 Capsicum annuum
CANSAT01G0679 Cannabis sativa
CANSAT25G3361 Cannabis sativa
CARHR280820 Cardamine hirsuta
Carub.0008s2764 Capsella rubella
Ca_24788_v3 Cicer arietinum L.
Cc07_g05760 Coffea canephora
Cc07_g05770 Coffea canephora
Cc08_g03100 Coffea canephora
Cc10_g03820 Coffea canephora
CDE04G3751 Ceratophyllum demersum
CDE07G1733 Ceratophyllum demersum
Cfa003987 Carpinus fangiana
Ciclev10000396m.g Citrus clementina
Ciclev10027479m.g Citrus clementina
Ciclev10031888m.g Citrus clementina
CiPaw.01G022900 Carya illinoinensis
CiPaw.02G010000 Carya illinoinensis
CiPaw.15G065500 Carya illinoinensis
CiPaw.16G050000 Carya illinoinensis
ClCG08G015570 Citrullus lanatus
COL.COLO4_11366 Corchorus olitorius
COL.COLO4_26442 Corchorus olitorius
Cpa.g.sc6.389 Carica papaya
Cpa.g.sc64.10 Carica papaya
CsaV3_2G028200 Cucumis sativus L.
CsaV3_6G043080 Cucumis sativus L.
CSS0038752 Camellia sinensis var. sinensis
CSS0045144 Camellia sinensis var. sinensis
DCAR_008783 Daucus carota
DCAR_012765 Daucus carota
DCAR_015788 Daucus carota
DCAR_025708 Daucus carota
Dinv35990 Davidia involucrata
Dinv39885 Davidia involucrata
Duzib116G0491 Durio zibethinus
Duzib147G0214 Durio zibethinus
Duzib264G1161 Durio zibethinus
ECA232G3082 Erigeron canadensis
Eucgr.F00961 Eucalyptus grandis
Eucgr.F02381 Eucalyptus grandis
Eucgr.I00974 Eucalyptus grandis
FAN15G0637 Fragaria x ananassa
FAN19G0765 Fragaria x ananassa
FAN23G0583 Fragaria x ananassa
FAN26G3265 Fragaria x ananassa
FAN27G0550 Fragaria x ananassa
FAN28G1119 Fragaria x ananassa
FvH4_1g15530 Fragaria vesca
FvH4_2g40740 Fragaria vesca
Glyma.01G184000 Glycine max
Glyma.04G036300 Glycine max
Glyma.05G080900 Glycine max
Glyma.06G036400 Glycine max
Glyma.11G058300 Glycine max
Glyma.14G080100 Glycine max
Glyma.17G177900 Glycine max
Glyma.17G245300 Glycine max
Gohir.A05G199900 Gossypium hirsutum
Gohir.A09G073250 Gossypium hirsutum
Gohir.A10G092900 Gossypium hirsutum
Gohir.A11G045900 Gossypium hirsutum
Gohir.A12G069900 Gossypium hirsutum
Gohir.D05G202900 Gossypium hirsutum
Gohir.D10G095400 Gossypium hirsutum
Gohir.D11G049500 Gossypium hirsutum
Gohir.D12G089300 Gossypium hirsutum
Gorai.007G053300 Gossypium raimondii
Gorai.008G073600 Gossypium raimondii
Gorai.009G208800 Gossypium raimondii
Gorai.011G104700 Gossypium raimondii
GSVIVG01004254001 Vitis vinifera
GSVIVG01007446001 Vitis vinifera
GSVIVG01009575001 Vitis vinifera
HanXRQChr09g0268141 Helianthus annuus
HanXRQChr12g0378361 Helianthus annuus
HanXRQChr12g0378421 Helianthus annuus
HanXRQChr15g0472361 Helianthus annuus
HanXRQChr15g0473801 Helianthus annuus
HanXRQChr16g0508121 Helianthus annuus
Haze_15438 Corylus avellana
Haze_17577 Corylus avellana
Hma1.2p1_0260F.1_g104640 Hydrangea macrophylla
Hma1.2p1_0337F.1_g129260 Hydrangea macrophylla
Hma1.2p1_0873F.1_g231310 Hydrangea macrophylla
HPP92_018715 Vanilla planifolia
HPP92_018717 Vanilla planifolia
HPP92_018746 Vanilla planifolia
HPP92_019608 Vanilla planifolia
Hund13576 Selenicereus undatus
Lalb_Chr05g0213191 Lupinus albus
Lalb_Chr05g0226701 Lupinus albus
Lalb_Chr08g0245701 Lupinus albus
Lalb_Chr23g0266891 Lupinus albus
Lj1g0015105 Lotus japonicus
Lj2g0022910 Lotus japonicus
Lj4A777T64 Lonicera japonica
Lj4g0008670 Lotus japonicus
Lj7C54T7 Lonicera japonica
Lsat_1_v5_gn_3_91640 Lactuca sativa
Lsat_1_v5_gn_4_124360 Lactuca sativa
Lsat_1_v5_gn_4_168940 Lactuca sativa
Manes.05G169801 Manihot esculenta
Manes.13G127900 Manihot esculenta
MBI06_g02233_MAGBIO Magnolia biondii
MBI08_g04321_MAGBIO Magnolia biondii
MBI11_g45423_MAGBIO Magnolia biondii
MBI16_g24710_MAGBIO Magnolia biondii
MD02G1167500 Malus domestica
MD08G1060600 Malus domestica
MD15G1035800 Malus domestica
MD15G1035900 Malus domestica
MD15G1279700 Malus domestica
Medtr3g101210 Medicago truncatula
Medtr5g017890 Medicago truncatula
MELO3C007543.2 Cucumis melo
MELO3C010896.2 Cucumis melo
Migut.C00615 Erythranthe guttata
Migut.H00464 Erythranthe guttata
Migut.K00825 Erythranthe guttata
MSTRG.23774 Avicennia marina
MSTRG.25115 Avicennia marina
Nitab4.5_0000068g0310 Nicotiana tabacum
Nitab4.5_0000440g0090 Nicotiana tabacum
Nitab4.5_0000453g0130 Nicotiana tabacum
Nitab4.5_0000728g0150 Nicotiana tabacum
Nitab4.5_0000790g0030 Nicotiana tabacum
Nitab4.5_0002157g0140 Nicotiana tabacum
Nitab4.5_0008739g0010 Nicotiana tabacum
Nitab4.5_0012613g0020 Nicotiana tabacum
Nn5g29341 Nelumbo nucifera
Nn6g34571 Nelumbo nucifera
Oeu003782.1 Olea europaea
Oeu004874.1 Olea europaea
Oeu009564.1 Olea europaea
Oeu021844.3 Olea europaea
Oeu032243.1 Olea europaea
Oeu033638.1 Olea europaea
Oeu050752.2 Olea europaea
Os03g0764300 Oryza sativa ssp. japonica
Os07g0119000 Oryza sativa ssp. japonica
Peaxi162Scf00049g00129 Petunia axillaris
Peaxi162Scf00064g10024 Petunia axillaris
Peaxi162Scf00993g00339 Petunia axillaris
Peaxi162Scf01092g00127 Petunia axillaris
PGR031G2872 Punica granatum
PGSC0003DMG400000752 Solanum tuberosum
PGSC0003DMG400010065 Solanum tuberosum
PGSC0003DMG400015448 Solanum tuberosum
PGSC0003DMG402008032 Solanum tuberosum
Phvul.001G019100 Phaseolus vulgaris
Phvul.002G021100 Phaseolus vulgaris
Phvul.003G246500 Phaseolus vulgaris
Phvul.009G062400 Phaseolus vulgaris
Potri.002G129100 Populus trichocarpa
Potri.005G135100 Populus trichocarpa
Potri.007G039800 Populus trichocarpa
Potri.014G035500 Populus trichocarpa
Prupe.1G389700 Prunus persica
Prupe.1G389800 Prunus persica
Prupe.7G137700 Prunus persica
Psat2g166840 Pisum sativum
Psat5g044960 Pisum sativum
Psat5g046720 Pisum sativum
PSO541G3272 Papaver somniferum
PSO675G3332 Papaver somniferum
QL02p006198 Quercus lobata
QL04p095514 Quercus lobata
QL06p042605 Quercus lobata
QL06p042619 Quercus lobata
QL06p042628 Quercus lobata
RcHm_v2.0_Chr2g0104811 Rosa chinensis
RcHm_v2.0_Chr2g0104831 Rosa chinensis
RcHm_v2.0_Chr6g0299851 Rosa chinensis
RcHm_v2.0_Chr7g0235671 Rosa chinensis
Rhsim06G0042300 Rhododendron simsii
Rhsim08G0103700 Rhododendron simsii
Rhsim08G0103900 Rhododendron simsii
Sabra02G0101200 Salix brachista
Sabra05G0108500 Salix brachista
Sabra07G0036100 Salix brachista
Sabra14G0025300 Salix brachista
SalBow1G1029 Salvia bowleyana
SalBow7G1547 Salvia bowleyana
Sc07g0000070 Simmondsia chinensis
Sed0023092 Sechium edule
Sed0025773 Sechium edule
SEGI_34962 Sequoiadendron giganteum
SGA_v2.0_scaffold15G07252 Striga asiatica
SGA_v2.0_scaffold217G42422 Striga asiatica
SGA_v2.0_scaffold33G13459 Striga asiatica
Solyc02g065110.3 Solanum lycopersicum
Solyc02g090430.3 Solanum lycopersicum
Solyc04g079400.3 Solanum lycopersicum
Solyc12g088940.3 Solanum lycopersicum
Sopen00g008140 Solanum pennellii
Sopen02g015270 Solanum pennellii
Sopen02g035130 Solanum pennellii
Sopen04g033010 Solanum pennellii
Sopen12g030840 Solanum pennellii
Sp2g29810 Schrenkiella parvula
TAR376G0404 Trochodendron aralioides
TAR628G0684 Trochodendron aralioides
THA.LOC104819224 Tarenaya hassleriana
THA.LOC104821266 Tarenaya hassleriana
Thecc.01G051100 Theobroma cacao
Thecc.08G014900 Theobroma cacao
Thhalv10003724m.g Eutrema salsugineum
Thhalv10015359m.g Eutrema salsugineum
TPR.G11357 Trifolium pratense
TPR.G20854 Trifolium pratense
TPR.G26067 Trifolium pratense
TPR.G26071 Trifolium pratense
TWI09G1612 Tripterygium wilfordii
TWI36G1315 Tripterygium wilfordii
TWI53G1851 Tripterygium wilfordii
TWI56G1464 Tripterygium wilfordii
unitig_8.g5013 Utricularia gibba
vmacro17921 Vaccinium macrocarpon
vmacro21574 Vaccinium macrocarpon
VMungo0251G0066 Vigna mungo
VMungo0647G2440 Vigna mungo
VMungo1215G1608 Vigna mungo
VMungo1309G1897 Vigna mungo
Zm00001eb058410 Zea mays
Zm00001eb117980 Zea mays
Zm00001eb214220 Zea mays

User provided reference genes

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