Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p05100 Brassica napus
A03p26450 Brassica napus
A04p21270 Brassica napus
A07p18530 Brassica napus
Aa31LG5G8110 Aethionema arabicum
Aa31LG9G16110 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3832 Anthoceros agrestis
Actinidia20439 Actinidia chinensis
Actinidia22401 Actinidia chinensis
Ah.01g003050 Amaranthus hybridus
Ah.03g136580 Amaranthus hybridus
Ah.03g136590 Amaranthus hybridus
AL4G22200 Arabidopsis lyrata
AL6G30180 Arabidopsis lyrata
Aqoxy1G01179 Aquilegia oxysepala
Aqoxy1G01430 Aquilegia oxysepala
Aqoxy2G01794 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.C485DN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F84KR8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KMC0BI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZT6WDH Arachis hypogaea
AT2G28000 Arabidopsis thaliana
AT5G18820 Arabidopsis thaliana
ATR0680G092 Amborella trichopoda
ATR0752G160 Amborella trichopoda
Atru.chr10.555 Acer truncatum
Atru.chr3.3570 Acer truncatum
AUR62017477 Chenopodium quinoa
AUR62022776 Chenopodium quinoa
AUR62029228 Chenopodium quinoa
AUR62037798 Chenopodium quinoa
BcaB02g10132 Brassica carinata
BcaB06g28182 Brassica carinata
BcaC01g04956 Brassica carinata
BcaC02g08214 Brassica carinata
BcaC02g10931 Brassica carinata
BcaC03g13619 Brassica carinata
BolC2t06917H Brassica oleracea
BolC3t15516H Brassica oleracea
BolC4t23857H Brassica oleracea
BolC4t27245H Brassica oleracea
BraA02t05470Z Brassica rapa
BraA03t11859Z Brassica rapa
BraA04t17694Z Brassica rapa
BraA07t29567Z Brassica rapa
C02p10150 Brassica napus
C03p31720 Brassica napus
C04p23530 Brassica napus
C04p23540 Brassica napus
C04p57100 Brassica napus
CAN.G149.7 Capsicum annuum
CAN.G2109.2 Capsicum annuum
CAN.G309.20 Capsicum annuum
CANSAT54G1744 Cannabis sativa
CARHR120720 Cardamine hirsuta
CARHR194180 Cardamine hirsuta
Carub.0004s0876 Capsella rubella
Carub.0006s1714 Capsella rubella
Ca_18757_v3 Cicer arietinum L.
Ca_19296_v3 Cicer arietinum L.
CBR_g29268 Chara braunii
Cc01_g10720 Coffea canephora
Cc09_g06020 Coffea canephora
CDE06G0995 Ceratophyllum demersum
CDE08G0323 Ceratophyllum demersum
CDE08G1067 Ceratophyllum demersum
Cfa000705 Carpinus fangiana
Cfa021936 Carpinus fangiana
Ciclev10014704m.g Citrus clementina
Ciclev10028085m.g Citrus clementina
CiPaw.09G076700 Carya illinoinensis
CiPaw.14G085900 Carya illinoinensis
ClCG01G009550 Citrullus lanatus
ClCG02G021340 Citrullus lanatus
COL.COLO4_17654 Corchorus olitorius
COL.COLO4_18284 Corchorus olitorius
Cpa.g.sc30.160 Carica papaya
Cpa.g.sc65.23 Carica papaya
Cre04.g231222 Chlamydomonas reinhardtii
CsaV3_1G046240 Cucumis sativus L.
CsaV3_6G014140 Cucumis sativus L.
CSS0025426 Camellia sinensis var. sinensis
CSS0040491 Camellia sinensis var. sinensis
DCAR_001317 Daucus carota
DCAR_009421 Daucus carota
DCAR_014076 Daucus carota
DCAR_015518 Daucus carota
DCAR_018790 Daucus carota
Dinv25917 Davidia involucrata
Dinv29346 Davidia involucrata
Dinv32697 Davidia involucrata
Duzib132G0202 Durio zibethinus
Duzib150G0548 Durio zibethinus
Duzib168G1201 Durio zibethinus
ECA238G1078 Erigeron canadensis
ECA238G3848 Erigeron canadensis
ECA248G3228 Erigeron canadensis
EL10Ac6g13892 Beta vulgaris
EL10Ac9g22554 Beta vulgaris
Eucgr.B02532 Eucalyptus grandis
Eucgr.D00059 Eucalyptus grandis
FAN11G2874 Fragaria x ananassa
FAN16G1361 Fragaria x ananassa
FAN16G1761 Fragaria x ananassa
FAN16G2148 Fragaria x ananassa
FAN21G1976 Fragaria x ananassa
FAN21G3731 Fragaria x ananassa
FAN25G1320 Fragaria x ananassa
FAN25G1870 Fragaria x ananassa
FvH4_3g12390 Fragaria vesca
FvH4_3g31450 Fragaria vesca
Glyma.07G221100 Glycine max
Glyma.11G195900 Glycine max
Glyma.12G078100 Glycine max
Glyma.20G019400 Glycine max
Gohir.A05G105800 Gossypium hirsutum
Gohir.A12G046600 Gossypium hirsutum
Gohir.A13G232000 Gossypium hirsutum
Gohir.D05G105900 Gossypium hirsutum
Gohir.D12G045600 Gossypium hirsutum
Gohir.D13G237600 Gossypium hirsutum
Gorai.008G048200 Gossypium raimondii
Gorai.009G109900 Gossypium raimondii
Gorai.013G268400 Gossypium raimondii
GSVIVG01012098001 Vitis vinifera
GSVIVG01031526001 Vitis vinifera
HanXRQChr01g0019141 Helianthus annuus
HanXRQChr01g0025391 Helianthus annuus
HanXRQChr09g0259321 Helianthus annuus
HanXRQChr11g0346241 Helianthus annuus
HanXRQChr15g0483731 Helianthus annuus
Haze_06071 Corylus avellana
Haze_23766 Corylus avellana
Hma1.2p1_0297F.1_g117030 Hydrangea macrophylla
HPP92_005941 Vanilla planifolia
HPP92_015165 Vanilla planifolia
Hund01496 Selenicereus undatus
Hund28483 Selenicereus undatus
Lalb_Chr01g0004471 Lupinus albus
Lalb_Chr16g0385191 Lupinus albus
Lalb_Chr19g0137081 Lupinus albus
Lj2A1017T37 Lonicera japonica
Lj2C350G16 Lonicera japonica
Lj3g0018755 Lotus japonicus
Lj4g0017078 Lotus japonicus
Lsat_1_v5_gn_1_63701 Lactuca sativa
Lsat_1_v5_gn_2_63681 Lactuca sativa
Lsat_1_v5_gn_2_99661 Lactuca sativa
Lsat_1_v5_gn_2_99701 Lactuca sativa
Lsat_1_v5_gn_3_19380 Lactuca sativa
Manes.03G070700 Manihot esculenta
Manes.11G149300 Manihot esculenta
Mapoly0058s0025 Marchantia polymorpha
MBI18_g11483_MAGBIO Magnolia biondii
MCO11G249 Micromonas commoda
MD03G1124000 Malus domestica
MD07G1091100 Malus domestica
MD08G1228200 Malus domestica
MD11G1141000 Malus domestica
MD15G1422100 Malus domestica
Medtr4g057970 Medicago truncatula
Medtr4g084130 Medicago truncatula
MELO3C021741.2 Cucumis melo
MELO3C026919.2 Cucumis melo
Migut.D02255 Erythranthe guttata
Migut.D02273 Erythranthe guttata
Migut.M01985 Erythranthe guttata
MSTRG.16350 Avicennia marina
MSTRG.17783 Avicennia marina
MSTRG.18680 Avicennia marina
Nitab4.5_0000106g0330 Nicotiana tabacum
Nitab4.5_0000511g0120 Nicotiana tabacum
Nitab4.5_0001288g0180 Nicotiana tabacum
Nitab4.5_0004126g0010 Nicotiana tabacum
Nitab4.5_0004225g0010 Nicotiana tabacum
Nitab4.5_0007745g0020 Nicotiana tabacum
Nn2g11550 Nelumbo nucifera
Nn2g13753 Nelumbo nucifera
Nn7g38249 Nelumbo nucifera
Oeu034804.1 Olea europaea
Oeu056297.1 Olea europaea
Os03g0859700 Oryza sativa ssp. japonica
Os09g0563300 Oryza sativa ssp. japonica
Os12g0277500 Oryza sativa ssp. japonica
Peaxi162Scf00029g00173 Petunia axillaris
Peaxi162Scf00115g01117 Petunia axillaris
Peaxi162Scf00198g00069 Petunia axillaris
PGR004G2346 Punica granatum
PGR102G2345 Punica granatum
PGSC0003DMG400001148 Solanum tuberosum
PGSC0003DMG400010424 Solanum tuberosum
PGSC0003DMG400011997 Solanum tuberosum
Phvul.002G097700 Phaseolus vulgaris
Phvul.011G082600 Phaseolus vulgaris
Potri.004G213400 Populus trichocarpa
Potri.009G009300 Populus trichocarpa
Potri.015G122800 Populus trichocarpa
Potri.015G123200 Populus trichocarpa
Potri.015G123600 Populus trichocarpa
Pp3c19_19090 Physcomitrium patens
Pp3c24_12180 Physcomitrium patens
Pp3c8_16290 Physcomitrium patens
PRCOL_00006419 Prasinoderma coloniale
Prupe.4G112900 Prunus persica
Prupe.6G106800 Prunus persica
Psat7g128880 Pisum sativum
Psat7g144320 Pisum sativum
PSO063G6160 Papaver somniferum
PSO339G1169 Papaver somniferum
PSO541G3570 Papaver somniferum
PSO675G2213 Papaver somniferum
QL01p020874 Quercus lobata
QL11p016848 Quercus lobata
QL11p017354 Quercus lobata
RcHm_v2.0_Chr5g0020251 Rosa chinensis
RcHm_v2.0_Chr5g0058151 Rosa chinensis
Rhsim01G0213500 Rhododendron simsii
Rhsim13G0129400 Rhododendron simsii
Sabra04G0144500 Salix brachista
Sabra09G0005500 Salix brachista
Sabra15G0138800 Salix brachista
Sabra15G0138900 Salix brachista
SalBow3G3740 Salvia bowleyana
Sc06g0010360 Simmondsia chinensis
Sc15g0001540 Simmondsia chinensis
Sc18g0004290 Simmondsia chinensis
Sed0003432 Sechium edule
Sed0018195 Sechium edule
Sed0019753 Sechium edule
SEGI_01305 Sequoiadendron giganteum
SGA_v2.0_scaffold180G39618 Striga asiatica
SGA_v2.0_scaffold263G45996 Striga asiatica
SGA_v2.0_scaffold298G47688 Striga asiatica
SMO145G0216 Selaginella moellendorffii
SMO331G0038 Selaginella moellendorffii
Solyc02g068730.3 Solanum lycopersicum
Solyc06g075010.4 Solanum lycopersicum
Solyc11g069790.2 Solanum lycopersicum
Sopen02g017900 Solanum pennellii
Sopen06g031440 Solanum pennellii
Sopen11g028490 Solanum pennellii
Sp4g10820 Schrenkiella parvula
Sp6g25550 Schrenkiella parvula
TAR623G1740 Trochodendron aralioides
TAR633G1914 Trochodendron aralioides
TAR636G0674 Trochodendron aralioides
TAR636G3112 Trochodendron aralioides
THA.LOC104800590 Tarenaya hassleriana
THA.LOC104814358 Tarenaya hassleriana
THA.LOC104815739 Tarenaya hassleriana
Thecc.02G008900 Theobroma cacao
Thecc.09G346600 Theobroma cacao
Thhalv10013085m.g Eutrema salsugineum
Thhalv10016532m.g Eutrema salsugineum
TPR.G20989 Trifolium pratense
TPR.G6168 Trifolium pratense
TWI38G2032 Tripterygium wilfordii
TWI75G0975 Tripterygium wilfordii
TWI79G0720 Tripterygium wilfordii
unitig_736.g22408 Utricularia gibba
vmacro03525 Vaccinium macrocarpon
vmacro14414 Vaccinium macrocarpon
VMungo0251G1123 Vigna mungo
VMungo1127G1473 Vigna mungo
Zm00001eb035510 Zea mays
Zm00001eb065160 Zea mays
Zm00001eb096310 Zea mays
Zm00001eb286730 Zea mays

User provided reference genes

Program Settings