Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p09810 Brassica napus
A03p14200 Brassica napus
A03p56940 Brassica napus
A07p06440 Brassica napus
A10p12440 Brassica napus
Aa31LG3G11180 Aethionema arabicum
Aa31sc209G110 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3678 Anthoceros agrestis
Actinidia05067 Actinidia chinensis
Actinidia09070 Actinidia chinensis
Actinidia32275 Actinidia chinensis
Actinidia32277 Actinidia chinensis
Ah.01g003030 Amaranthus hybridus
Ah.06g182370 Amaranthus hybridus
AL3G43300 Arabidopsis lyrata
AL7G26010 Arabidopsis lyrata
AL8G30720 Arabidopsis lyrata
Aqoxy1G02920 Aquilegia oxysepala
Aqoxy1G04188 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.578PES Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HM7NEH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KFH0Q4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T7YHMF Arachis hypogaea
AT2G05790 Arabidopsis thaliana
AT4G26830 Arabidopsis thaliana
AT5G55180 Arabidopsis thaliana
ATR0059G016 Amborella trichopoda
Atru.chr2.3513 Acer truncatum
Atru.chr6.3254 Acer truncatum
AUR62015867 Chenopodium quinoa
AUR62020357 Chenopodium quinoa
AUR62022784 Chenopodium quinoa
AUR62043338 Chenopodium quinoa
BcaB01g04350 Brassica carinata
BcaB05g22189 Brassica carinata
BcaB06g26857 Brassica carinata
BcaC01g06352 Brassica carinata
BcaC03g14255 Brassica carinata
BcaC04g20262 Brassica carinata
BcaC06g32725 Brassica carinata
BcaC06g32726 Brassica carinata
BcaC06g35930 Brassica carinata
BolC3t14080H Brassica oleracea
BolC7t41391H Brassica oleracea
BolC7t46001H Brassica oleracea
BolC9t57443H Brassica oleracea
BraA02t06045Z Brassica rapa
BraA03t10721Z Brassica rapa
BraA03t14764Z Brassica rapa
BraA07t28435Z Brassica rapa
C02p16350 Brassica napus
C03p16610 Brassica napus
C07p09580 Brassica napus
C07p55130 Brassica napus
C09p45820 Brassica napus
CAN.G1558.1 Capsicum annuum
CAN.G542.13 Capsicum annuum
CANSAT11G2325 Cannabis sativa
CARHR103380 Cardamine hirsuta
CARHR234450 Cardamine hirsuta
CARHR268540 Cardamine hirsuta
Carub.0003s2698 Capsella rubella
Carub.0007s1401 Capsella rubella
Carub.0008s1550 Capsella rubella
Ca_06094_v3 Cicer arietinum L.
Ca_11687_v3 Cicer arietinum L.
Ca_16284_v3 Cicer arietinum L.
Cc05_g02850 Coffea canephora
Cc05_g14210 Coffea canephora
Cc11_g03420 Coffea canephora
CDE04G0974 Ceratophyllum demersum
CDE06G1425 Ceratophyllum demersum
CDE06G1886 Ceratophyllum demersum
Cfa014320 Carpinus fangiana
Cfa020289 Carpinus fangiana
Ciclev10008176m.g Citrus clementina
Ciclev10015086m.g Citrus clementina
CiPaw.03G155300 Carya illinoinensis
CiPaw.04G110500 Carya illinoinensis
CiPaw.11G194000 Carya illinoinensis
CiPaw.12G132800 Carya illinoinensis
CiPaw.12G133000 Carya illinoinensis
CiPaw.12G133100 Carya illinoinensis
ClCG09G011230 Citrullus lanatus
ClCG10G005180 Citrullus lanatus
COL.COLO4_09715 Corchorus olitorius
COL.COLO4_21874 Corchorus olitorius
Cpa.g.sc12.252 Carica papaya
Cpa.g.sc132.21 Carica papaya
CsaV3_3G004850 Cucumis sativus L.
CsaV3_6G037720 Cucumis sativus L.
CSS0005348 Camellia sinensis var. sinensis
CSS0012156 Camellia sinensis var. sinensis
CSS0012190 Camellia sinensis var. sinensis
CSS0029445 Camellia sinensis var. sinensis
DCAR_012921 Daucus carota
DCAR_016652 Daucus carota
DCAR_019744 Daucus carota
DCAR_019747 Daucus carota
Dinv22237 Davidia involucrata
Dinv39749 Davidia involucrata
Duzib133G1432 Durio zibethinus
Duzib138G0115 Durio zibethinus
Duzib170G0754 Durio zibethinus
Duzib211G0160 Durio zibethinus
Duzib213G0413 Durio zibethinus
ECA234G2982 Erigeron canadensis
ECA240G4468 Erigeron canadensis
EL10Ac4g07708 Beta vulgaris
EL10Ac9g22543 Beta vulgaris
Eucgr.A01095 Eucalyptus grandis
Eucgr.F03494 Eucalyptus grandis
Eucgr.F03495 Eucalyptus grandis
FAN02G3533 Fragaria x ananassa
FAN05G4083 Fragaria x ananassa
FAN09G0906 Fragaria x ananassa
FAN11G4018 Fragaria x ananassa
FAN14G1632 Fragaria x ananassa
FAN14G5688 Fragaria x ananassa
FAN21G0911 Fragaria x ananassa
FvH4_3g23410 Fragaria vesca
FvH4_6g42190 Fragaria vesca
Glyma.02G269000 Glycine max
Glyma.02G294000 Glycine max
Glyma.14G020000 Glycine max
Glyma.14G048400 Glycine max
Gohir.A01G083600 Gossypium hirsutum
Gohir.A01G083700 Gossypium hirsutum
Gohir.A04G012484 Gossypium hirsutum
Gohir.A07G187300 Gossypium hirsutum
Gohir.D01G070100 Gossypium hirsutum
Gohir.D05G374000 Gossypium hirsutum
Gohir.D07G193800 Gossypium hirsutum
Gorai.001G216900 Gossypium raimondii
Gorai.002G092600 Gossypium raimondii
Gorai.009G442700 Gossypium raimondii
GSVIVG01030503001 Vitis vinifera
GSVIVG01037711001 Vitis vinifera
HanXRQChr03g0076771 Helianthus annuus
HanXRQChr03g0083091 Helianthus annuus
HanXRQChr10g0306521 Helianthus annuus
HanXRQChr12g0373671 Helianthus annuus
HanXRQChr16g0506411 Helianthus annuus
Haze_09734 Corylus avellana
Haze_12768 Corylus avellana
Hma1.2p1_0177F.1_g078055 Hydrangea macrophylla
HPP92_016995 Vanilla planifolia
HPP92_017012 Vanilla planifolia
HPP92_017089 Vanilla planifolia
Hund01422 Selenicereus undatus
Hund02038 Selenicereus undatus
Hund23203 Selenicereus undatus
Lalb_Chr04g0248221 Lupinus albus
Lalb_Chr10g0105611 Lupinus albus
Lj1P781T14 Lonicera japonica
Lj1P879T27 Lonicera japonica
Lj8A172T71 Lonicera japonica
Lj8C172T7 Lonicera japonica
LjContig00029g0017972 Lotus japonicus
LjContig00272g0008824 Lotus japonicus
Lsat_1_v5_gn_5_124440 Lactuca sativa
Lsat_1_v5_gn_7_95080 Lactuca sativa
Lsat_1_v5_gn_9_93180 Lactuca sativa
Manes.12G069700 Manihot esculenta
Manes.13G066200 Manihot esculenta
Manes.15G067000 Manihot esculenta
Mapoly0051s0021 Marchantia polymorpha
MBI13_g30260_MAGBIO Magnolia biondii
MD03G1194600 Malus domestica
MD09G1113900 Malus domestica
MD11G1210800 Malus domestica
MD17G1104000 Malus domestica
Medtr1g056640 Medicago truncatula
Medtr3g080410 Medicago truncatula
Medtr5g085580 Medicago truncatula
MELO3C014182.2 Cucumis melo
MELO3C014432.2 Cucumis melo
Migut.H01262 Erythranthe guttata
Migut.H01797 Erythranthe guttata
Migut.M01720 Erythranthe guttata
MSTRG.12993 Avicennia marina
MSTRG.6953 Avicennia marina
Nitab4.5_0000168g0120 Nicotiana tabacum
Nitab4.5_0000482g0280 Nicotiana tabacum
Nitab4.5_0005008g0010 Nicotiana tabacum
Nitab4.5_0017412g0010 Nicotiana tabacum
Nn1g03379 Nelumbo nucifera
Nn1g07296 Nelumbo nucifera
Oeu013120.1 Olea europaea
Oeu013121.1 Olea europaea
Oeu026386.1 Olea europaea
Oeu027263.1 Olea europaea
Oeu036761.1 Olea europaea
Oeu054305.1 Olea europaea
Os02g0771700 Oryza sativa ssp. japonica
Peaxi162Scf00339g00086 Petunia axillaris
Peaxi162Scf00921g00242 Petunia axillaris
PGR031G2741 Punica granatum
PGR042G0168 Punica granatum
PGR142G0779 Punica granatum
PGSC0003DMG400000689 Solanum tuberosum
PGSC0003DMG401012862 Solanum tuberosum
PGSC0003DMG402012862 Solanum tuberosum
Phvul.008G213400 Phaseolus vulgaris
Phvul.008G271000 Phaseolus vulgaris
Potri.002G224600 Populus trichocarpa
Potri.011G094400 Populus trichocarpa
Potri.014G158400 Populus trichocarpa
Pp3c11_5330 Physcomitrium patens
Pp3c14_5200 Physcomitrium patens
Pp3c26_9710 Physcomitrium patens
Prupe.3G210700 Prunus persica
Prupe.4G222100 Prunus persica
Psat0ss3348g0040 Pisum sativum
Psat5g111640 Pisum sativum
Psat6g112240 Pisum sativum
PSO210G1784 Papaver somniferum
PSO541G5659 Papaver somniferum
PSO675G7480 Papaver somniferum
PSO832G0461 Papaver somniferum
QL08p007284 Quercus lobata
QL08p030698 Quercus lobata
RcHm_v2.0_Chr2g0158111 Rosa chinensis
RcHm_v2.0_Chr5g0041211 Rosa chinensis
Rhsim04G0050500 Rhododendron simsii
Rhsim06G0222600 Rhododendron simsii
Sabra11G0088300 Salix brachista
Sabra14G0120400 Salix brachista
SalBow8G2745 Salvia bowleyana
Sc07g0002850 Simmondsia chinensis
Sc21g0001150 Simmondsia chinensis
Sed0001704 Sechium edule
SEGI_37999 Sequoiadendron giganteum
SGA_v2.0_scaffold159G37539 Striga asiatica
SGA_v2.0_scaffold171G38910 Striga asiatica
SGA_v2.0_scaffold49G18382 Striga asiatica
SMO367G0739 Selaginella moellendorffii
Solyc07g049370.2 Solanum lycopersicum
Solyc12g014420.2 Solanum lycopersicum
Sopen07g024710 Solanum pennellii
Sopen12g007290 Solanum pennellii
Sp3g24260 Schrenkiella parvula
Sp6g17110 Schrenkiella parvula
TAR020G0005 Trochodendron aralioides
TAR624G1026 Trochodendron aralioides
TAR626G1555 Trochodendron aralioides
THA.LOC104813434 Tarenaya hassleriana
THA.LOC104817678 Tarenaya hassleriana
THA.LOC104826599 Tarenaya hassleriana
Thecc.01G181800 Theobroma cacao
Thecc.07G029700 Theobroma cacao
Thhalv10002515m.g Eutrema salsugineum
Thhalv10013478m.g Eutrema salsugineum
Thhalv10026799m.g Eutrema salsugineum
TPR.G2811 Trifolium pratense
TPR.G29034 Trifolium pratense
TPR.G32109 Trifolium pratense
TWI18G1363 Tripterygium wilfordii
TWI36G1596 Tripterygium wilfordii
TWI38G0033 Tripterygium wilfordii
unitig_52.g17325 Utricularia gibba
unitig_578.g16280 Utricularia gibba
unitig_62.g23245 Utricularia gibba
unitig_747.g21592 Utricularia gibba
vmacro09360 Vaccinium macrocarpon
vmacro22323 Vaccinium macrocarpon
VMungo0647G0319 Vigna mungo
VMungo0647G0631 Vigna mungo
Zm00001eb256330 Zea mays

User provided reference genes

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