Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p17470 Brassica napus
A06p10600 Brassica napus
A08p31930 Brassica napus
Aa31LG1G510 Aethionema arabicum
Aa31LG3G550 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4536 Anthoceros agrestis
Actinidia03797 Actinidia chinensis
Actinidia03798 Actinidia chinensis
Actinidia14724 Actinidia chinensis
Ah.09g232180 Amaranthus hybridus
AL1G26530 Arabidopsis lyrata
AL7G26790 Arabidopsis lyrata
Aqoxy5G02376 Aquilegia oxysepala
Aqoxy7G01179 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.R6C977 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RMT1KV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RUH48D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UFMT81 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X9EE45 Arachis hypogaea
AT1G14560 Arabidopsis thaliana
AT4G26180 Arabidopsis thaliana
ATR0652G002 Amborella trichopoda
ATR0789G001 Amborella trichopoda
Atru.chr7.1105 Acer truncatum
Atru.chr7.1549 Acer truncatum
Atru.chr7.1550 Acer truncatum
AUR62001517 Chenopodium quinoa
AUR62009851 Chenopodium quinoa
AUR62027402 Chenopodium quinoa
AUR62031315 Chenopodium quinoa
BcaB02g06514 Brassica carinata
BcaB03g13094 Brassica carinata
BcaB03g13131 Brassica carinata
BcaC05g25365 Brassica carinata
BcaC07g38744 Brassica carinata
BcaC09g50677 Brassica carinata
BcaNung02443 Brassica carinata
BolC1t02128H Brassica oleracea
BolC5t29994H Brassica oleracea
BolC8t49297H Brassica oleracea
BraA01t01702Z Brassica rapa
BraA06t24240Z Brassica rapa
BraA08t35115Z Brassica rapa
C01p21990 Brassica napus
C05p12470 Brassica napus
C08p16770 Brassica napus
CAN.G1241.16 Capsicum annuum
CAN.G191.5 Capsicum annuum
CANSAT25G2058 Cannabis sativa
CANSAT56G0044 Cannabis sativa
CANSAT56G2285 Cannabis sativa
CARHR015060 Cardamine hirsuta
CARHR233710 Cardamine hirsuta
Carub.0001s1432 Capsella rubella
Carub.0007s1477 Capsella rubella
Ca_15821_v3 Cicer arietinum L.
Ca_15855_v3 Cicer arietinum L.
Ca_25617_v3 Cicer arietinum L.
CBR_g37220 Chara braunii
Cc06_g11140 Coffea canephora
Cc08_g10860 Coffea canephora
CDE02G3478 Ceratophyllum demersum
CDE04G1549 Ceratophyllum demersum
CDE05G3069 Ceratophyllum demersum
Cfa017971 Carpinus fangiana
Ciclev10008822m.g Citrus clementina
Ciclev10008884m.g Citrus clementina
CiPaw.03G218600 Carya illinoinensis
CiPaw.15G037200 Carya illinoinensis
CiPaw.16G027400 Carya illinoinensis
ClCG03G015760 Citrullus lanatus
ClCG08G017100 Citrullus lanatus
COL.COLO4_08754 Corchorus olitorius
COL.COLO4_18225 Corchorus olitorius
COL.COLO4_21081 Corchorus olitorius
COL.COLO4_30683 Corchorus olitorius
Cpa.g.sc7.162 Carica papaya
Cpa.g.sc7.241 Carica papaya
Cpa.g.sc7.243 Carica papaya
Cre12.g548152 Chlamydomonas reinhardtii
CsaV3_1G040250 Cucumis sativus L.
CsaV3_2G025480 Cucumis sativus L.
CsaV3_UNG064500 Cucumis sativus L.
CSS0005876 Camellia sinensis var. sinensis
CSS0008848 Camellia sinensis var. sinensis
CSS0032335 Camellia sinensis var. sinensis
DCAR_000805 Daucus carota
DCAR_024682 Daucus carota
Dinv22880 Davidia involucrata
Dinv36747 Davidia involucrata
Duzib150G0414 Durio zibethinus
Duzib150G1557 Durio zibethinus
Duzib168G0093 Durio zibethinus
Duzib168G0404 Durio zibethinus
Duzib187G0613 Durio zibethinus
Duzib235G1136 Durio zibethinus
ECA234G3118 Erigeron canadensis
ECA240G3922 Erigeron canadensis
EL10Ac7g16368 Beta vulgaris
EL10Ac8g19324 Beta vulgaris
Eucgr.C00667 Eucalyptus grandis
Eucgr.C03660 Eucalyptus grandis
Eucgr.F03147 Eucalyptus grandis
FAN15G1064 Fragaria x ananassa
FAN19G0841 Fragaria x ananassa
FAN23G0603 Fragaria x ananassa
FAN24G0812 Fragaria x ananassa
FAN26G1240 Fragaria x ananassa
FAN26G3205 Fragaria x ananassa
FAN27G0887 Fragaria x ananassa
FAN28G0489 Fragaria x ananassa
FvH4_1g07110 Fragaria vesca
FvH4_2g31630 Fragaria vesca
Glyma.01G003450 Glycine max
Glyma.04G052300 Glycine max
Glyma.06G052900 Glycine max
Glyma.07G128500 Glycine max
Gohir.A05G029100 Gossypium hirsutum
Gohir.A05G041000 Gossypium hirsutum
Gohir.A06G086300 Gossypium hirsutum
Gohir.A06G191300 Gossypium hirsutum
Gohir.A13G193900 Gossypium hirsutum
Gohir.D05G030600 Gossypium hirsutum
Gohir.D05G042700 Gossypium hirsutum
Gohir.D06G085700 Gossypium hirsutum
Gohir.D06G199700 Gossypium hirsutum
Gohir.D13G199700 Gossypium hirsutum
Gorai.009G030800 Gossypium raimondii
Gorai.009G043800 Gossypium raimondii
Gorai.010G099000 Gossypium raimondii
Gorai.010G232700 Gossypium raimondii
Gorai.013G228500 Gossypium raimondii
GSVIVG01015230001 Vitis vinifera
GSVIVG01035380001 Vitis vinifera
HanXRQChr03g0079871 Helianthus annuus
HanXRQChr03g0079881 Helianthus annuus
HanXRQChr10g0319151 Helianthus annuus
HanXRQChr10g0319171 Helianthus annuus
HanXRQChr12g0354701 Helianthus annuus
Haze_18160 Corylus avellana
Haze_25888 Corylus avellana
Hma1.2p1_0544F.1_g175670 Hydrangea macrophylla
Hma1.2p1_0798F.1_g219650 Hydrangea macrophylla
HPP92_011461 Vanilla planifolia
HPP92_011462 Vanilla planifolia
HPP92_011469 Vanilla planifolia
HPP92_019996 Vanilla planifolia
Hund18705 Selenicereus undatus
Lalb_Chr22g0349741 Lupinus albus
Lalb_Chr23g0267831 Lupinus albus
Lj1g0012375 Lotus japonicus
Lj2g0020508 Lotus japonicus
Lj7A673G61 Lonicera japonica
Lj7C261G1 Lonicera japonica
Lsat_1_v5_gn_5_145741 Lactuca sativa
Lsat_1_v5_gn_5_48300 Lactuca sativa
Manes.03G049800 Manihot esculenta
Manes.16G081900 Manihot esculenta
Manes.16G103600 Manihot esculenta
MBI01_g02263_MAGBIO Magnolia biondii
MBI01_g21130_MAGBIO Magnolia biondii
MD08G1064700 Malus domestica
MD15G1057000 Malus domestica
MD15G1204300 Malus domestica
Medtr3g104600 Medicago truncatula
Medtr6g034145 Medicago truncatula
Medtr6g091800 Medicago truncatula
Medtr6g091910 Medicago truncatula
Medtr6g092210 Medicago truncatula
MELO3C010746.2 Cucumis melo
MELO3C015452.2 Cucumis melo
Migut.E01777 Erythranthe guttata
Migut.J00590 Erythranthe guttata
MSTRG.6046 Avicennia marina
Nitab4.5_0000540g0220 Nicotiana tabacum
Nitab4.5_0000713g0060 Nicotiana tabacum
Nitab4.5_0000938g0030 Nicotiana tabacum
Nitab4.5_0002039g0100 Nicotiana tabacum
Nitab4.5_0010958g0020 Nicotiana tabacum
Nitab4.5_0011792g0010 Nicotiana tabacum
Nn6g35427 Nelumbo nucifera
Nn6g35526 Nelumbo nucifera
Nn8g38804 Nelumbo nucifera
Oeu018430.1 Olea europaea
Oeu018631.1 Olea europaea
Oeu021832.1 Olea europaea
Oeu028152.1 Olea europaea
Os01g0571000 Oryza sativa ssp. japonica
Os01g0708900 Oryza sativa ssp. japonica
Os02g0226300 Oryza sativa ssp. japonica
Peaxi162Scf00073g00037 Petunia axillaris
Peaxi162Scf00498g00119 Petunia axillaris
PGR004G0542 Punica granatum
PGR119G0578 Punica granatum
PGSC0003DMG400000342 Solanum tuberosum
PGSC0003DMG400008200 Solanum tuberosum
PGSC0003DMG401024352 Solanum tuberosum
Phvul.004G171800 Phaseolus vulgaris
Phvul.009G078600 Phaseolus vulgaris
Potri.006G153600 Populus trichocarpa
Potri.006G226300 Populus trichocarpa
Pp3c26_14570 Physcomitrium patens
PRCOL_00001228 Prasinoderma coloniale
PRCOL_00006255 Prasinoderma coloniale
Prupe.1G409600 Prunus persica
Prupe.7G212900 Prunus persica
Psat1g049720 Pisum sativum
Psat5g036200 Pisum sativum
PSO063G3229 Papaver somniferum
PSO210G2123 Papaver somniferum
PSO210G4693 Papaver somniferum
PSO210G7036 Papaver somniferum
PSO210G7513 Papaver somniferum
PSO832G0922 Papaver somniferum
QL02p000777 Quercus lobata
QL02p000819 Quercus lobata
QL02p000861 Quercus lobata
QL02p063056 Quercus lobata
RcHm_v2.0_Chr2g0093001 Rosa chinensis
RcHm_v2.0_Chr6g0311191 Rosa chinensis
Rhsim03G0234000 Rhododendron simsii
Rhsim07G0141600 Rhododendron simsii
Sabra06G0121500 Salix brachista
Sabra06G0175100 Salix brachista
SalBow1G2176 Salvia bowleyana
SalBow6G1760 Salvia bowleyana
Sc08g0008330 Simmondsia chinensis
Sc12g0010370 Simmondsia chinensis
Sed0017388 Sechium edule
Sed0017973 Sechium edule
Sed0020483 Sechium edule
SEGI_06675 Sequoiadendron giganteum
SGA_v2.0_scaffold10G05188 Striga asiatica
SGA_v2.0_scaffold10G05209 Striga asiatica
SGA_v2.0_scaffold163G38018 Striga asiatica
SMO134G0259 Selaginella moellendorffii
Solyc08g062860.3 Solanum lycopersicum
Solyc12g008770.2 Solanum lycopersicum
Sopen08g018410 Solanum pennellii
Sopen12g003700 Solanum pennellii
Sp1g12910 Schrenkiella parvula
SpUN0102_0030 Schrenkiella parvula
TAR624G1230 Trochodendron aralioides
TAR626G0306 Trochodendron aralioides
TAR636G0100 Trochodendron aralioides
THA.LOC104801771 Tarenaya hassleriana
THA.LOC104805120 Tarenaya hassleriana
THA.LOC104811739 Tarenaya hassleriana
THA.LOC104812239 Tarenaya hassleriana
Thecc.06G114500 Theobroma cacao
Thecc.09G056800 Theobroma cacao
Thecc.09G092500 Theobroma cacao
Thhalv10008170m.g Eutrema salsugineum
Thhalv10025674m.g Eutrema salsugineum
TPR.G35488 Trifolium pratense
TPR.G3590 Trifolium pratense
TWI31G1218 Tripterygium wilfordii
TWI32G1247 Tripterygium wilfordii
TWI34G0108 Tripterygium wilfordii
TWI34G1865 Tripterygium wilfordii
unitig_27.g24731 Utricularia gibba
unitig_27.g24732 Utricularia gibba
unitig_8.g5059 Utricularia gibba
vmacro06279 Vaccinium macrocarpon
vmacro14257 Vaccinium macrocarpon
VMungo0464G0015 Vigna mungo
VMungo1309G2965 Vigna mungo
Zm00001eb239690 Zea mays
Zm00001eb357260 Zea mays
Zm00001eb361230 Zea mays

User provided reference genes

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