Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p42940 Brassica napus
A06p05610 Brassica napus
A08p35040 Brassica napus
Aa31sc110G40 Aethionema arabicum
Actinidia01847 Actinidia chinensis
Actinidia28517 Actinidia chinensis
Actinidia40054 Actinidia chinensis
Ah.04g155860 Amaranthus hybridus
Ah.04g163260 Amaranthus hybridus
AL1G19090 Arabidopsis lyrata
AL3G14550 Arabidopsis lyrata
Aqoxy5G00239 Aquilegia oxysepala
Aqoxy5G00240 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.21R0E2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.77E9KA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M7A5MM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R0KKYG Arachis hypogaea
AT1G08650 Arabidopsis thaliana
AT3G04530 Arabidopsis thaliana
ATR0048G059 Amborella trichopoda
Atru.chr2.939 Acer truncatum
Atru.chr2.964 Acer truncatum
Atru.chr4.2066 Acer truncatum
AUR62004855 Chenopodium quinoa
AUR62015578 Chenopodium quinoa
AUR62040938 Chenopodium quinoa
BcaB03g13319 Brassica carinata
BcaB07g34106 Brassica carinata
BcaC05g29934 Brassica carinata
BcaC05g30189 Brassica carinata
BcaC07g38408 Brassica carinata
BcaC07g38410 Brassica carinata
BcaC07g38439 Brassica carinata
BolC5t29433H Brassica oleracea
BolC5t34925H Brassica oleracea
BolC8t48846H Brassica oleracea
BraA05t23039Z Brassica rapa
BraA06t23769Z Brassica rapa
BraA08t35413Z Brassica rapa
C05p06730 Brassica napus
C05p62720 Brassica napus
C08p11710 Brassica napus
C08p12070 Brassica napus
CAN.G1095.34 Capsicum annuum
CAN.G1609.1 Capsicum annuum
CAN.G374.11 Capsicum annuum
CANSAT54G0963 Cannabis sativa
CANSAT78G2297 Cannabis sativa
CARHR008580 Cardamine hirsuta
Carub.0001s0801 Capsella rubella
Carub.0003s0369 Capsella rubella
Ca_10012_v3 Cicer arietinum L.
Cc02_g08980 Coffea canephora
Cc03_g05470 Coffea canephora
CDE04G1912 Ceratophyllum demersum
CDE04G2357 Ceratophyllum demersum
CDE04G2947 Ceratophyllum demersum
CDE04G3453 Ceratophyllum demersum
CDE06G0882 Ceratophyllum demersum
CDE06G2794 Ceratophyllum demersum
Cfa006338 Carpinus fangiana
Cfa006339 Carpinus fangiana
Cfa022952 Carpinus fangiana
Ciclev10005624m.g Citrus clementina
Ciclev10010804m.g Citrus clementina
Ciclev10020693m.g Citrus clementina
CiPaw.01G185300 Carya illinoinensis
CiPaw.02G112800 Carya illinoinensis
CiPaw.08G118000 Carya illinoinensis
ClCG05G004340 Citrullus lanatus
ClCG06G009670 Citrullus lanatus
COL.COLO4_15467 Corchorus olitorius
COL.COLO4_15871 Corchorus olitorius
Cpa.g.sc162.35 Carica papaya
Cpa.g.sc44.66 Carica papaya
CsaV3_1G045430 Cucumis sativus L.
CsaV3_3G012120 Cucumis sativus L.
CsaV3_UNG233320 Cucumis sativus L.
CSS0033486 Camellia sinensis var. sinensis
CSS0038895 Camellia sinensis var. sinensis
DCAR_001956 Daucus carota
DCAR_002319 Daucus carota
Dinv06229 Davidia involucrata
Dinv09432 Davidia involucrata
Dinv10485 Davidia involucrata
Dinv14609 Davidia involucrata
Dinv21515 Davidia involucrata
Dinv27048 Davidia involucrata
Dinv29864 Davidia involucrata
Duzib106G1469 Durio zibethinus
Duzib128G1924 Durio zibethinus
Duzib151G0808 Durio zibethinus
Duzib177G1180 Durio zibethinus
ECA233G4267 Erigeron canadensis
ECA238G2398 Erigeron canadensis
EL10Ac3g05012 Beta vulgaris
EL10Ac4g09069 Beta vulgaris
Eucgr.B02141 Eucalyptus grandis
Eucgr.H03059 Eucalyptus grandis
Eucgr.H03060 Eucalyptus grandis
FAN02G2025 Fragaria x ananassa
FAN02G3831 Fragaria x ananassa
FAN05G3288 Fragaria x ananassa
FAN05G4238 Fragaria x ananassa
FAN05G4550 Fragaria x ananassa
FAN09G2980 Fragaria x ananassa
FAN12G2258 Fragaria x ananassa
FAN14G0007 Fragaria x ananassa
FAN14G2700 Fragaria x ananassa
FAN14G5672 Fragaria x ananassa
FAN17G0660 Fragaria x ananassa
FvH4_4g03560 Fragaria vesca
FvH4_6g02090 Fragaria vesca
FvH4_6g08930 Fragaria vesca
Glyma.03G251400 Glycine max
Glyma.10G166600 Glycine max
Glyma.10G186000 Glycine max
Glyma.20G222600 Glycine max
Gohir.A10G112000 Gossypium hirsutum
Gohir.A11G248000 Gossypium hirsutum
Gohir.A13G168000 Gossypium hirsutum
Gohir.D10G155600 Gossypium hirsutum
Gohir.D11G258400 Gossypium hirsutum
Gorai.007G276600 Gossypium raimondii
Gorai.011G173700 Gossypium raimondii
GSVIVG01023539001 Vitis vinifera
GSVIVG01027804001 Vitis vinifera
HanXRQChr08g0225491 Helianthus annuus
HanXRQChr11g0322951 Helianthus annuus
HanXRQChr14g0455181 Helianthus annuus
Haze_04441 Corylus avellana
Haze_11372 Corylus avellana
Hma1.2p1_0912F.1_g235900 Hydrangea macrophylla
Hma1.2p1_0992F.1_g245135 Hydrangea macrophylla
Hma1.2p1_3787F.1_g337590 Hydrangea macrophylla
HPP92_005138 Vanilla planifolia
HPP92_008606 Vanilla planifolia
Hund06915 Selenicereus undatus
Hund22152 Selenicereus undatus
Lalb_Chr04g0262051 Lupinus albus
Lalb_Chr06g0168311 Lupinus albus
Lalb_Chr21g0311211 Lupinus albus
Lj1g0004835 Lotus japonicus
Lj2C40G8 Lonicera japonica
Lj5g0018108 Lotus japonicus
Lj6P619T61 Lonicera japonica
Lsat_1_v5_gn_0_401 Lactuca sativa
Lsat_1_v5_gn_2_107961 Lactuca sativa
Lsat_1_v5_gn_8_2820 Lactuca sativa
Manes.03G164500 Manihot esculenta
Manes.08G138300 Manihot esculenta
Manes.09G148600 Manihot esculenta
Manes.15G040400 Manihot esculenta
MBI10_g06939_MAGBIO Magnolia biondii
MCO05G126 Micromonas commoda
MCO06G210 Micromonas commoda
MD04G1229200 Malus domestica
MD16G1217500 Malus domestica
Medtr1g080020 Medicago truncatula
Medtr7g116390 Medicago truncatula
MELO3C006426.2 Cucumis melo
MELO3C024646.2 Cucumis melo
Migut.F00806 Erythranthe guttata
Migut.F01546 Erythranthe guttata
Migut.N00268 Erythranthe guttata
MSTRG.24681 Avicennia marina
MSTRG.318 Avicennia marina
MSTRG.8224 Avicennia marina
Nitab4.5_0000687g0060 Nicotiana tabacum
Nitab4.5_0001005g0080 Nicotiana tabacum
Nitab4.5_0001268g0020 Nicotiana tabacum
Nitab4.5_0001372g0070 Nicotiana tabacum
Nitab4.5_0002333g0040 Nicotiana tabacum
Nitab4.5_0002916g0030 Nicotiana tabacum
Nitab4.5_0003768g0010 Nicotiana tabacum
Nitab4.5_0003768g0020 Nicotiana tabacum
Nitab4.5_0018681g0010 Nicotiana tabacum
Nn1g02752 Nelumbo nucifera
Nn3g19642 Nelumbo nucifera
Oeu014534.1 Olea europaea
Oeu050660.1 Olea europaea
Oeu059145.1 Olea europaea
Oeu059146.1 Olea europaea
Os02g0625300 Oryza sativa ssp. japonica
Os02g0807000 Oryza sativa ssp. japonica
Os04g0517500 Oryza sativa ssp. japonica
Peaxi162Scf00135g00056 Petunia axillaris
Peaxi162Scf00135g00417 Petunia axillaris
Peaxi162Scf00519g00012 Petunia axillaris
Peaxi162Scf00579g00064 Petunia axillaris
PGR004G2503 Punica granatum
PGR004G2793 Punica granatum
PGR103G0001 Punica granatum
PGR142G4024 Punica granatum
PGSC0003DMG400011480 Solanum tuberosum
PGSC0003DMG400011502 Solanum tuberosum
PGSC0003DMG400016291 Solanum tuberosum
PGSC0003DMG400017173 Solanum tuberosum
PGSC0003DMG400023404 Solanum tuberosum
Phvul.006G105900 Phaseolus vulgaris
Phvul.008G151806 Phaseolus vulgaris
Phvul.L001678 Phaseolus vulgaris
Potri.008G166500 Populus trichocarpa
Potri.010G071400 Populus trichocarpa
Potri.013G046100 Populus trichocarpa
Potri.019G018100 Populus trichocarpa
PRCOL_00006216 Prasinoderma coloniale
Prupe.1G038800 Prunus persica
Prupe.6G349100 Prunus persica
Psat6g143360 Pisum sativum
PSO210G6131 Papaver somniferum
PSO832G4476 Papaver somniferum
QL03p031608 Quercus lobata
QL06p017811 Quercus lobata
QL09p031195 Quercus lobata
RcHm_v2.0_Chr3g0449921 Rosa chinensis
RcHm_v2.0_Chr4g0392911 Rosa chinensis
Rhsim05G0175200 Rhododendron simsii
Rhsim09G0138100 Rhododendron simsii
Sabra08G0127000 Salix brachista
Sabra13G0042300 Salix brachista
Sabra19G0027700 Salix brachista
Sabra19G0030100 Salix brachista
SalBow3G1992 Salvia bowleyana
SalBow6G5716 Salvia bowleyana
Sc09g0004180 Simmondsia chinensis
Sc13g0005310 Simmondsia chinensis
Sc20g0000590 Simmondsia chinensis
Sed0001550 Sechium edule
Sed0011108 Sechium edule
Sed0011585 Sechium edule
Sed0024621 Sechium edule
SEGI_08723 Sequoiadendron giganteum
SEGI_23546 Sequoiadendron giganteum
SEGI_32390 Sequoiadendron giganteum
SGA_v2.0_scaffold2G01011 Striga asiatica
SGA_v2.0_scaffold308G48085 Striga asiatica
Solyc04g009910.3 Solanum lycopersicum
Solyc05g055050.3 Solanum lycopersicum
Solyc06g053620.4 Solanum lycopersicum
Solyc09g090090.2 Solanum lycopersicum
Sopen04g005040 Solanum pennellii
Sopen04g005050 Solanum pennellii
Sopen05g033510 Solanum pennellii
Sopen06g018720 Solanum pennellii
Sopen09g033000 Solanum pennellii
Sp1g07310 Schrenkiella parvula
Sp3g03380 Schrenkiella parvula
TAR362G1188 Trochodendron aralioides
TAR636G2466 Trochodendron aralioides
THA.LOC104799247 Tarenaya hassleriana
THA.LOC104821293 Tarenaya hassleriana
THA.LOC104823764 Tarenaya hassleriana
THA.LOC104823765 Tarenaya hassleriana
Thecc.04G254600 Theobroma cacao
Thecc.05G271900 Theobroma cacao
Thhalv10008405m.g Eutrema salsugineum
Thhalv10021288m.g Eutrema salsugineum
TPR.G22323 Trifolium pratense
TWI09G1030 Tripterygium wilfordii
TWI53G0273 Tripterygium wilfordii
TWI53G0674 Tripterygium wilfordii
TWI56G0471 Tripterygium wilfordii
TWI73G1261 Tripterygium wilfordii
vmacro10356 Vaccinium macrocarpon
vmacro20001 Vaccinium macrocarpon
VMungo0540G2502 Vigna mungo
VMungo0720G1281 Vigna mungo
VMungo0720G2748 Vigna mungo
Zm00001eb247580 Zea mays
Zm00001eb258360 Zea mays

User provided reference genes

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