Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p02160 Brassica napus
A10p21630 Brassica napus
A10p24580 Brassica napus
Aa31LG11G11750 Aethionema arabicum
Aa31LG11G11760 Aethionema arabicum
Aa31LG4G6730 Aethionema arabicum
Aa31LG5G14210 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_369.492 Anthoceros agrestis
Actinidia03918 Actinidia chinensis
Actinidia21537 Actinidia chinensis
Actinidia37821 Actinidia chinensis
Actinidia37822 Actinidia chinensis
Ah.12g058690 Amaranthus hybridus
Ah.16g100660 Amaranthus hybridus
AL3G13500 Arabidopsis lyrata
AL6G24380 Arabidopsis lyrata
AL6G28920 Arabidopsis lyrata
Aqoxy1G00326 Aquilegia oxysepala
Aqoxy2G00567 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0I1Q5M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.0ZJB3J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5T8TQ9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A01CJ0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CG0SMC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F65ZHY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HGKH61 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LSN1P0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SML0AN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TJTE4X Arachis hypogaea
AT3G03700 Arabidopsis thaliana
AT3G04440 Arabidopsis thaliana
AT5G13760 Arabidopsis thaliana
AT5G17830 Arabidopsis thaliana
ATR0320G026 Amborella trichopoda
ATR0697G039 Amborella trichopoda
Atru.chr11.2513 Acer truncatum
AUR62009419 Chenopodium quinoa
AUR62023096 Chenopodium quinoa
AUR62030498 Chenopodium quinoa
AUR62030796 Chenopodium quinoa
BcaB08g36738 Brassica carinata
BcaC04g18756 Brassica carinata
BcaC04g18757 Brassica carinata
BcaC04g18758 Brassica carinata
BcaC04g19082 Brassica carinata
BcaC04g24255 Brassica carinata
BcaC05g30256 Brassica carinata
BcaC05g30257 Brassica carinata
BcaNung04187 Brassica carinata
BcaNung04188 Brassica carinata
BolC2t06587H Brassica oleracea
BolC5t34987H Brassica oleracea
BolC9t58769H Brassica oleracea
BolC9t59170H Brassica oleracea
BraA02t05190Z Brassica rapa
BraA05t23105Z Brassica rapa
BraA10t44225Z Brassica rapa
BraA10t44521Z Brassica rapa
C02p06410 Brassica napus
C09p59290 Brassica napus
C09p63330 Brassica napus
CAN.G909.1 Capsicum annuum
CANSAT78G0643 Cannabis sativa
CANSAT78G2265 Cannabis sativa
CANSAT80G1785 Cannabis sativa
CARHR077760 Cardamine hirsuta
CARHR195340 Cardamine hirsuta
CARHR199680 Cardamine hirsuta
Carub.0003s0286 Capsella rubella
Carub.0006s1194 Capsella rubella
Carub.0006s1606 Capsella rubella
Ca_08317_v3 Cicer arietinum L.
Ca_14514_v3 Cicer arietinum L.
Ca_25677_v3 Cicer arietinum L.
Cc02_g28800 Coffea canephora
Cc06_g21510 Coffea canephora
CDE05G2343 Ceratophyllum demersum
CDE10G0338 Ceratophyllum demersum
Cfa010810 Carpinus fangiana
Cfa017720 Carpinus fangiana
Ciclev10020145m.g Citrus clementina
Ciclev10031090m.g Citrus clementina
CiPaw.13G007900 Carya illinoinensis
CiPaw.14G003200 Carya illinoinensis
ClCG04G004670 Citrullus lanatus
ClCG10G012160 Citrullus lanatus
COL.COLO4_12335 Corchorus olitorius
COL.COLO4_20091 Corchorus olitorius
Cpa.g.c39738 Carica papaya
Cpa.g.sc125.48 Carica papaya
Cpa.g.sc161.39 Carica papaya
CsaV3_3G031920 Cucumis sativus L.
CsaV3_4G031620 Cucumis sativus L.
CSS0014905 Camellia sinensis var. sinensis
CSS0024363 Camellia sinensis var. sinensis
CSS0036102 Camellia sinensis var. sinensis
CSS0045747 Camellia sinensis var. sinensis
CSS0046392 Camellia sinensis var. sinensis
DCAR_003227 Daucus carota
DCAR_013490 Daucus carota
Dinv07432 Davidia involucrata
Dinv13792 Davidia involucrata
Dinv25040 Davidia involucrata
Dinv43404 Davidia involucrata
Duzib138G1858 Durio zibethinus
Duzib177G1178 Durio zibethinus
ECA248G1655 Erigeron canadensis
EL10Ac2g04372 Beta vulgaris
EL10Ac5g12554 Beta vulgaris
Eucgr.G03302 Eucalyptus grandis
Eucgr.G03321 Eucalyptus grandis
Eucgr.K01535 Eucalyptus grandis
FAN01G0945 Fragaria x ananassa
FAN01G1015 Fragaria x ananassa
FAN03G2673 Fragaria x ananassa
FAN06G4412 Fragaria x ananassa
FAN10G3807 Fragaria x ananassa
FAN19G2212 Fragaria x ananassa
FAN23G1176 Fragaria x ananassa
FAN26G0183 Fragaria x ananassa
FvH4_1g29870 Fragaria vesca
FvH4_7g01810 Fragaria vesca
Glyma.11G160275 Glycine max
Glyma.16G035700 Glycine max
Glyma.19G117400 Glycine max
Gohir.A08G142400 Gossypium hirsutum
Gohir.A08G219577 Gossypium hirsutum
Gohir.A08G220200 Gossypium hirsutum
Gohir.A11G228100 Gossypium hirsutum
Gohir.D08G163400 Gossypium hirsutum
Gohir.D11G240600 Gossypium hirsutum
Gorai.004G170200 Gossypium raimondii
Gorai.004G252400 Gossypium raimondii
Gorai.007G254200 Gossypium raimondii
GSVIVG01029963001 Vitis vinifera
GSVIVG01032213001 Vitis vinifera
HanXRQChr01g0007801 Helianthus annuus
Haze_03144 Corylus avellana
Haze_03147 Corylus avellana
Haze_20403 Corylus avellana
Hma1.2p1_0685F.1_g203230 Hydrangea macrophylla
Hma1.2p1_2956F.1_g330760 Hydrangea macrophylla
HPP92_012088 Vanilla planifolia
Hund14291 Selenicereus undatus
Hund25523 Selenicereus undatus
Lalb_Chr04g0263841 Lupinus albus
Lalb_Chr22g0358631 Lupinus albus
Lj1g0005164 Lotus japonicus
Lj1P1071T51 Lonicera japonica
Lj3g0023886 Lotus japonicus
Lj9A641T63 Lonicera japonica
Lsat_1_v5_gn_1_104941 Lactuca sativa
Manes.07G010600 Manihot esculenta
Manes.08G152811 Manihot esculenta
Manes.09G136500 Manihot esculenta
Manes.10G136100 Manihot esculenta
Mapoly0029s0041 Marchantia polymorpha
Mapoly0061s0040 Marchantia polymorpha
Mapoly0285s0002 Marchantia polymorpha
MBI17_g15562_MAGBIO Magnolia biondii
MD02G1300300 Malus domestica
MD07G1024500 Malus domestica
MD12G1012000 Malus domestica
MD14G1009600 Malus domestica
Medtr3g033520 Medicago truncatula
Medtr6g027560 Medicago truncatula
Medtr7g086710 Medicago truncatula
MELO3C008866.2 Cucumis melo
MELO3C023999.2 Cucumis melo
Migut.B01265 Erythranthe guttata
MSTRG.17007 Avicennia marina
MSTRG.19737 Avicennia marina
MSTRG.20557 Avicennia marina
Nitab4.5_0001244g0080 Nicotiana tabacum
Nitab4.5_0008942g0010 Nicotiana tabacum
Nn2g15196 Nelumbo nucifera
Nn7g36333 Nelumbo nucifera
Oeu027368.1 Olea europaea
Oeu027369.1 Olea europaea
Oeu047589.1 Olea europaea
Oeu047604.1 Olea europaea
Oeu049475.1 Olea europaea
Oeu052783.1 Olea europaea
Os03g0651300 Oryza sativa ssp. japonica
Os07g0656100 Oryza sativa ssp. japonica
Peaxi162Scf01270g00119 Petunia axillaris
PGR031G2578 Punica granatum
PGR142G4348 Punica granatum
PGSC0003DMG400006835 Solanum tuberosum
Phvul.001G105700 Phaseolus vulgaris
Phvul.004G049900 Phaseolus vulgaris
Phvul.005G035600 Phaseolus vulgaris
Potri.001G261900 Populus trichocarpa
Potri.009G056301 Populus trichocarpa
Potri.009G056700 Populus trichocarpa
Potri.013G066100 Populus trichocarpa
Potri.019G040500 Populus trichocarpa
Pp3c18_21450 Physcomitrium patens
Pp3c19_5950 Physcomitrium patens
Pp3c21_1180 Physcomitrium patens
Prupe.2G024300 Prunus persica
Prupe.7G015900 Prunus persica
Psat1g089520 Pisum sativum
Psat3g086440 Pisum sativum
Psat3g086480 Pisum sativum
Psat3g086520 Pisum sativum
Psat4g072880 Pisum sativum
Psat5g212040 Pisum sativum
PSO339G2823 Papaver somniferum
PSO384G3577 Papaver somniferum
PSO384G4049 Papaver somniferum
QL04p010027 Quercus lobata
QL07p017416 Quercus lobata
RcHm_v2.0_Chr1g0318441 Rosa chinensis
RcHm_v2.0_Chr2g0108791 Rosa chinensis
RcHm_v2.0_Chr3g0495071 Rosa chinensis
RcHm_v2.0_Chr3g0496021 Rosa chinensis
Rhsim01G0126000 Rhododendron simsii
Rhsim03G0049300 Rhododendron simsii
Sabra09G0041500 Salix brachista
Sabra16G0160700 Salix brachista
Sabra19G0050700 Salix brachista
SalBow1G8109 Salvia bowleyana
SalBow5G3219 Salvia bowleyana
SalBow6G1865 Salvia bowleyana
SalBow6G6590 Salvia bowleyana
SalBow8G3232 Salvia bowleyana
Sc01g0006280 Simmondsia chinensis
Sc10g0000350 Simmondsia chinensis
Sed0002676 Sechium edule
Sed0010492 Sechium edule
Sed0013128 Sechium edule
Sed0024698 Sechium edule
SEGI_37974 Sequoiadendron giganteum
SGA_v2.0_scaffold4G02485 Striga asiatica
SGA_v2.0_scaffold66G22372 Striga asiatica
Solyc01g087890.3 Solanum lycopersicum
Sopen01g034820 Solanum pennellii
Sp3g02670 Schrenkiella parvula
Sp6g26420 Schrenkiella parvula
Sp6g30260 Schrenkiella parvula
TAR623G0444 Trochodendron aralioides
TAR633G0545 Trochodendron aralioides
TAR633G2675 Trochodendron aralioides
TAR636G0986 Trochodendron aralioides
THA.LOC104819101 Tarenaya hassleriana
THA.LOC104820797 Tarenaya hassleriana
THA.LOC104821149 Tarenaya hassleriana
Thecc.01G406400 Theobroma cacao
Thecc.05G241400 Theobroma cacao
Thhalv10013102m.g Eutrema salsugineum
Thhalv10015580m.g Eutrema salsugineum
Thhalv10020627m.g Eutrema salsugineum
TPR.G14550 Trifolium pratense
TPR.G34796 Trifolium pratense
TPR.G9518 Trifolium pratense
TWI09G0383 Tripterygium wilfordii
TWI32G0450 Tripterygium wilfordii
unitig_0.g584 Utricularia gibba
unitig_0.g585 Utricularia gibba
unitig_61.g26458 Utricularia gibba
unitig_744.g24147 Utricularia gibba
unitig_8.g3867 Utricularia gibba
vmacro07651 Vaccinium macrocarpon
vmacro17360 Vaccinium macrocarpon
vmacro21139 Vaccinium macrocarpon
VMungo0464G1911 Vigna mungo
VMungo1080G0592 Vigna mungo
VMungo1309G2174 Vigna mungo
VMungo1383G3395 Vigna mungo
Zm00001eb052910 Zea mays
Zm00001eb110610 Zea mays

User provided reference genes

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