Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p23860 Brassica napus
A07p00190 Brassica napus
A09p58840 Brassica napus
Aa31LG5G5810 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1267 Anthoceros agrestis
Actinidia10978 Actinidia chinensis
Actinidia12543 Actinidia chinensis
Actinidia23655 Actinidia chinensis
Actinidia35981 Actinidia chinensis
AL3G53600 Arabidopsis lyrata
AL4G26280 Arabidopsis lyrata
arahy.Tifrunner.gnm1.ann1.2CGE8W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4PQ52P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.668WW2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6NK4RZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7HHZ6C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DQDZ84 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P3ZWTW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ULNI5L Arachis hypogaea
AT2G20562 Arabidopsis thaliana
AT2G31090 Arabidopsis thaliana
ATR0602G104 Amborella trichopoda
ATR0730G153 Amborella trichopoda
Atru.chr10.1708 Acer truncatum
AUR62036155 Chenopodium quinoa
BcaB03g16851 Brassica carinata
BcaB06g28414 Brassica carinata
BcaB06g28491 Brassica carinata
BcaB08g34916 Brassica carinata
BcaC06g36743 Brassica carinata
BcaC07g41207 Brassica carinata
BcaC07g41211 Brassica carinata
BolC4t27536H Brassica oleracea
BolC7t40494H Brassica oleracea
BolC8t51776H Brassica oleracea
BraA04t17909Z Brassica rapa
BraA07t27812Z Brassica rapa
BraA09t41270Z Brassica rapa
C04p60360 Brassica napus
C07p00480 Brassica napus
C08p42170 Brassica napus
CAN.G168.10 Capsicum annuum
CAN.G79.58 Capsicum annuum
CANSAT35G1245 Cannabis sativa
CANSAT64G1999 Cannabis sativa
CANSAT64G2806 Cannabis sativa
CARHR111130 Cardamine hirsuta
CARHR124680 Cardamine hirsuta
Carub.0003s3504 Capsella rubella
Carub.0004s1235 Capsella rubella
Cc02_g14480 Coffea canephora
Cc05_g08100 Coffea canephora
Cc05_g11680 Coffea canephora
CDE08G0607 Ceratophyllum demersum
CDE08G0976 Ceratophyllum demersum
Cfa000578 Carpinus fangiana
Cfa014659 Carpinus fangiana
Ciclev10017362m.g Citrus clementina
Ciclev10017380m.g Citrus clementina
CiPaw.03G181400 Carya illinoinensis
CiPaw.03G185900 Carya illinoinensis
CiPaw.04G129000 Carya illinoinensis
CiPaw.10G057300 Carya illinoinensis
CiPaw.11G167100 Carya illinoinensis
ClCG00G000670 Citrullus lanatus
ClCG03G007830 Citrullus lanatus
ClCG09G011370 Citrullus lanatus
COL.COLO4_35520 Corchorus olitorius
COL.COLO4_36294 Corchorus olitorius
CsaV3_2G034430 Cucumis sativus L.
CsaV3_6G037590 Cucumis sativus L.
CSS0008217 Camellia sinensis var. sinensis
CSS0010712 Camellia sinensis var. sinensis
CSS0011963 Camellia sinensis var. sinensis
CSS0014872 Camellia sinensis var. sinensis
CSS0017211 Camellia sinensis var. sinensis
CSS0017592 Camellia sinensis var. sinensis
CSS0024442 Camellia sinensis var. sinensis
CSS0038402 Camellia sinensis var. sinensis
CSS0038650 Camellia sinensis var. sinensis
CSS0044279 Camellia sinensis var. sinensis
DCAR_004022 Daucus carota
DCAR_007970 Daucus carota
DCAR_009756 Daucus carota
Dinv03919 Davidia involucrata
Dinv15465 Davidia involucrata
Dinv36011 Davidia involucrata
Duzib160G0435 Durio zibethinus
Duzib187G0907 Durio zibethinus
Duzib248G0222 Durio zibethinus
Duzib264G1300 Durio zibethinus
ECA234G2758 Erigeron canadensis
EL10Ac9g20879 Beta vulgaris
Eucgr.E02672 Eucalyptus grandis
Eucgr.F03298 Eucalyptus grandis
Eucgr.K01057 Eucalyptus grandis
Eucgr.K01099 Eucalyptus grandis
FAN05G0209 Fragaria x ananassa
FAN05G1655 Fragaria x ananassa
FAN09G2433 Fragaria x ananassa
FAN09G4017 Fragaria x ananassa
FAN14G1604 Fragaria x ananassa
FAN21G3542 Fragaria x ananassa
FAN28G1289 Fragaria x ananassa
FvH4_6g27090 Fragaria vesca
Glyma.06G289200 Glycine max
Glyma.12G117800 Glycine max
Glyma.12G122200 Glycine max
Glyma.12G206700 Glycine max
Glyma.12G209300 Glycine max
Glyma.13G231900 Glycine max
Glyma.13G273700 Glycine max
Glyma.13G292000 Glycine max
Glyma.13G294200 Glycine max
Gohir.A10G154100 Gossypium hirsutum
Gohir.D01G018200 Gossypium hirsutum
Gohir.D05G159100 Gossypium hirsutum
Gohir.D10G112000 Gossypium hirsutum
Gorai.002G020400 Gossypium raimondii
Gorai.009G164200 Gossypium raimondii
Gorai.011G123800 Gossypium raimondii
GSVIVG01014277001 Vitis vinifera
GSVIVG01020672001 Vitis vinifera
HanXRQChr04g0116691 Helianthus annuus
HanXRQChr12g0372691 Helianthus annuus
HanXRQChr16g0526231 Helianthus annuus
HanXRQChr16g0526291 Helianthus annuus
HanXRQChr17g0554641 Helianthus annuus
Haze_09402 Corylus avellana
Haze_09403 Corylus avellana
Haze_13242 Corylus avellana
Haze_13343 Corylus avellana
Hma1.2p1_0155F.1_g068350 Hydrangea macrophylla
HPP92_021495 Vanilla planifolia
HPP92_023339 Vanilla planifolia
Hund00982 Selenicereus undatus
Hund07836 Selenicereus undatus
Lalb_Chr01g0005071 Lupinus albus
Lalb_Chr03g0029851 Lupinus albus
Lalb_Chr14g0367151 Lupinus albus
Lalb_Chr20g0121301 Lupinus albus
Lalb_Chr24g0400051 Lupinus albus
Lj1E686T0 Lonicera japonica
Lj1E689T0 Lonicera japonica
Lj3g0001457 Lotus japonicus
Lj3g0002725 Lotus japonicus
Lj3g0021690 Lotus japonicus
Lj3g0028058 Lotus japonicus
Lj6g0022423 Lotus japonicus
Lsat_1_v5_gn_4_27781 Lactuca sativa
Lsat_1_v5_gn_7_23441 Lactuca sativa
Manes.03G105200 Manihot esculenta
Manes.12G090100 Manihot esculenta
Manes.13G142100 Manihot esculenta
Manes.16G036300 Manihot esculenta
Mapoly0016s0178 Marchantia polymorpha
MBI07_g17047_MAGBIO Magnolia biondii
MBI07_g38298_MAGBIO Magnolia biondii
MD05G1304200 Malus domestica
MD09G1240200 Malus domestica
MD10G1283600 Malus domestica
MD17G1233200 Malus domestica
MD17G1241600 Malus domestica
Medtr2g015540 Medicago truncatula
Medtr2g090695 Medicago truncatula
Medtr4g078840 Medicago truncatula
Medtr4g079680 Medicago truncatula
MELO3C014353.2 Cucumis melo
MELO3C035720.2 Cucumis melo
Migut.H01454 Erythranthe guttata
Migut.M00777 Erythranthe guttata
Nitab4.5_0000376g0190 Nicotiana tabacum
Nitab4.5_0001645g0020 Nicotiana tabacum
Nitab4.5_0001645g0030 Nicotiana tabacum
Nitab4.5_0002674g0010 Nicotiana tabacum
Nitab4.5_0012054g0010 Nicotiana tabacum
Nn1g04234 Nelumbo nucifera
Nn1g04354 Nelumbo nucifera
Nn1g06420 Nelumbo nucifera
Oeu005398.1 Olea europaea
Oeu036094.1 Olea europaea
Os01g0214500 Oryza sativa ssp. japonica
Os05g0209500 Oryza sativa ssp. japonica
PGR031G2360 Punica granatum
PGR042G0900 Punica granatum
PGR042G3884 Punica granatum
PGR142G2935 Punica granatum
PGR142G3273 Punica granatum
PGSC0003DMG400022952 Solanum tuberosum
PGSC0003DMG400026623 Solanum tuberosum
Phvul.005G096500 Phaseolus vulgaris
Phvul.005G100600 Phaseolus vulgaris
Phvul.006G177900 Phaseolus vulgaris
Phvul.011G123800 Phaseolus vulgaris
Phvul.011G135700 Phaseolus vulgaris
Potri.001G395200 Populus trichocarpa
Potri.007G136800 Populus trichocarpa
Potri.011G063900 Populus trichocarpa
Potri.011G114600 Populus trichocarpa
Potri.017G015900 Populus trichocarpa
Potri.019G090500 Populus trichocarpa
Pp3c19_1670 Physcomitrium patens
Pp3c4_17790 Physcomitrium patens
Pp3c5_22950 Physcomitrium patens
Prupe.3G124200 Prunus persica
Prupe.4G058200 Prunus persica
Prupe.5G004400 Prunus persica
Prupe.8G118600 Prunus persica
Prupe.8G118700 Prunus persica
Psat1g199640 Pisum sativum
Psat4g185040 Pisum sativum
Psat5g275560 Pisum sativum
Psat7g167440 Pisum sativum
PSO133G0034 Papaver somniferum
PSO541G4196 Papaver somniferum
PSO541G4514 Papaver somniferum
PSO675G3020 Papaver somniferum
QL08p040205 Quercus lobata
QL08p041339 Quercus lobata
RcHm_v2.0_Chr2g0127121 Rosa chinensis
RcHm_v2.0_Chr2g0128431 Rosa chinensis
RcHm_v2.0_Chr2g0129051 Rosa chinensis
RcHm_v2.0_Chr5g0010171 Rosa chinensis
Rhsim04G0071100 Rhododendron simsii
Rhsim06G0133400 Rhododendron simsii
Sabra04G0035400 Salix brachista
Sabra07G0110100 Salix brachista
Sabra11G0100600 Salix brachista
Sabra13G0100200 Salix brachista
Sabra19G0100700 Salix brachista
Sabra19G0104100 Salix brachista
SalBow7G0011 Salvia bowleyana
SalBow7G0474 Salvia bowleyana
SalBow8G3252 Salvia bowleyana
Sc21g0003850 Simmondsia chinensis
Sed0012818 Sechium edule
Sed0022922 Sechium edule
Sed0028107 Sechium edule
SEGI_11049 Sequoiadendron giganteum
SEGI_39526 Sequoiadendron giganteum
SHI00883 Sapria himalayana
SMO340G0016 Selaginella moellendorffii
Solyc02g077230.3 Solanum lycopersicum
Solyc07g062800.1 Solanum lycopersicum
Solyc10g008050.2 Solanum lycopersicum
Solyc10g008730.3 Solanum lycopersicum
Sopen02g022120 Solanum pennellii
Sopen10g003920 Solanum pennellii
Sopen10g004500 Solanum pennellii
Sp3g33780 Schrenkiella parvula
THA.LOC104826225 Tarenaya hassleriana
THA.LOC109116706 Tarenaya hassleriana
Thecc.01G243900 Theobroma cacao
Thecc.02G186000 Theobroma cacao
Thecc.06G174500 Theobroma cacao
Thhalv10002140m.g Eutrema salsugineum
Thhalv10017452m.g Eutrema salsugineum
TPR.G11482 Trifolium pratense
TPR.G6405 Trifolium pratense
TPR.G9349 Trifolium pratense
TWI14G0466 Tripterygium wilfordii
TWI23G1160 Tripterygium wilfordii
TWI32G1110 Tripterygium wilfordii
TWI59G0304 Tripterygium wilfordii
TWI59G0606 Tripterygium wilfordii
TWI63G1494 Tripterygium wilfordii
unitig_747.g21619 Utricularia gibba
vmacro09244 Vaccinium macrocarpon
vmacro11894 Vaccinium macrocarpon
vmacro12365 Vaccinium macrocarpon
vmacro15962 Vaccinium macrocarpon
Zm00001eb283840 Zea mays
Zm00001eb338460 Zea mays

User provided reference genes

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