Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p22570 Brassica napus
A05p06280 Brassica napus
A05p15490 Brassica napus
A09p66590 Brassica napus
A10p05760 Brassica napus
Aa31LG1G6390 Aethionema arabicum
Aa31LG5G19440 Aethionema arabicum
Aa31LG5G6720 Aethionema arabicum
Actinidia23886 Actinidia chinensis
Actinidia33921 Actinidia chinensis
Actinidia34455 Actinidia chinensis
Ah.12g053420 Amaranthus hybridus
Ah.16g103530 Amaranthus hybridus
AL1G17340 Arabidopsis lyrata
AL4G24720 Arabidopsis lyrata
AL4G37830 Arabidopsis lyrata
Aqoxy2G00878 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5TX9RQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5WY9SE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P5LGTJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R8XGJB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UDFI8U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W50AUC Arachis hypogaea
AT1G07200 Arabidopsis thaliana
AT2G29970 Arabidopsis thaliana
AT2G40130 Arabidopsis thaliana
ATR0681G118 Amborella trichopoda
Atru.chr12.42 Acer truncatum
Atru.chr12.43 Acer truncatum
Atru.chr3.4200 Acer truncatum
AUR62012257 Chenopodium quinoa
AUR62020145 Chenopodium quinoa
AUR62022889 Chenopodium quinoa
BcaB01g03568 Brassica carinata
BcaB02g09046 Brassica carinata
BcaB02g10284 Brassica carinata
BcaC01g05428 Brassica carinata
BcaC02g11075 Brassica carinata
BcaC02g12129 Brassica carinata
BcaC07g42021 Brassica carinata
BcaC07g42448 Brassica carinata
BolC3t15061H Brassica oleracea
BolC4t22349H Brassica oleracea
BolC4t23610H Brassica oleracea
BolC5t29299H Brassica oleracea
BolC8t52605H Brassica oleracea
BraA03t11483Z Brassica rapa
BraA05t19596Z Brassica rapa
BraA05t20465Z Brassica rapa
BraA09t41997Z Brassica rapa
BraA10t42837Z Brassica rapa
C03p26760 Brassica napus
C04p07240 Brassica napus
C04p20790 Brassica napus
C05p05280 Brassica napus
C08p50770 Brassica napus
CAN.G19.14 Capsicum annuum
CAN.G367.2 Capsicum annuum
CANSAT54G0082 Cannabis sativa
CARHR006920 Cardamine hirsuta
CARHR123210 Cardamine hirsuta
CARHR135140 Cardamine hirsuta
Carub.0001s0649 Capsella rubella
Carub.0004s1105 Capsella rubella
Carub.0004s2234 Capsella rubella
Ca_05607_v3 Cicer arietinum L.
Ca_14942_v3 Cicer arietinum L.
Ca_15129_v3 Cicer arietinum L.
Cc01_g14300 Coffea canephora
Cc02_g06450 Coffea canephora
CDE10G0199 Ceratophyllum demersum
CDE10G0350 Ceratophyllum demersum
CDE10G0554 Ceratophyllum demersum
Cfa001313 Carpinus fangiana
Cfa011706 Carpinus fangiana
Ciclev10027720m.g Citrus clementina
Ciclev10030554m.g Citrus clementina
CiPaw.01G299500 Carya illinoinensis
CiPaw.13G076600 Carya illinoinensis
CiPaw.14G058700 Carya illinoinensis
ClCG03G000700 Citrullus lanatus
ClCG11G006090 Citrullus lanatus
COL.COLO4_19171 Corchorus olitorius
COL.COLO4_25739 Corchorus olitorius
Cpa.g.sc112.7 Carica papaya
Cpa.g.sc19.167 Carica papaya
CsaV3_1G036230 Cucumis sativus L.
CsaV3_6G001870 Cucumis sativus L.
CSS0001146 Camellia sinensis var. sinensis
CSS0008949 Camellia sinensis var. sinensis
CSS0028358 Camellia sinensis var. sinensis
CSS0041864 Camellia sinensis var. sinensis
DCAR_018952 Daucus carota
DCAR_028574 Daucus carota
Dinv03104 Davidia involucrata
Dinv10618 Davidia involucrata
Dinv17999 Davidia involucrata
Dinv28649 Davidia involucrata
Duzib106G1481 Durio zibethinus
Duzib114G0392 Durio zibethinus
Duzib150G0927 Durio zibethinus
Duzib168G1374 Durio zibethinus
ECA238G1510 Erigeron canadensis
ECA248G1282 Erigeron canadensis
EL10Ac2g04840 Beta vulgaris
EL10Ac7g16181 Beta vulgaris
Eucgr.J00203 Eucalyptus grandis
FAN10G3304 Fragaria x ananassa
FAN11G1616 Fragaria x ananassa
FAN16G2627 Fragaria x ananassa
FAN21G0346 Fragaria x ananassa
FAN25G3577 Fragaria x ananassa
FvH4_3g38740 Fragaria vesca
FvH4_7g24540 Fragaria vesca
Glyma.02G226900 Glycine max
Glyma.11G174500 Glycine max
Glyma.11G230700 Glycine max
Glyma.14G193900 Glycine max
Glyma.18G026600 Glycine max
Glyma.18G062300 Glycine max
Gohir.A05G088000 Gossypium hirsutum
Gohir.A05G304400 Gossypium hirsutum
Gohir.A10G237100 Gossypium hirsutum
Gohir.D05G089100 Gossypium hirsutum
Gohir.D05G303400 Gossypium hirsutum
Gohir.D10G248800 Gossypium hirsutum
Gorai.009G091300 Gossypium raimondii
Gorai.009G322600 Gossypium raimondii
Gorai.011G289100 Gossypium raimondii
GSVIVG01024729001 Vitis vinifera
GSVIVG01032812001 Vitis vinifera
HanXRQChr01g0011231 Helianthus annuus
HanXRQChr14g0459681 Helianthus annuus
Haze_17231 Corylus avellana
Haze_24337 Corylus avellana
Hma1.2p1_0703F.1_g206330 Hydrangea macrophylla
Hma1.2p1_0703F.1_g206340 Hydrangea macrophylla
Hma1.2p1_0703F.1_g206350 Hydrangea macrophylla
Hma1.2p1_0962F.1_g241830 Hydrangea macrophylla
HPP92_019006 Vanilla planifolia
HPP92_019007 Vanilla planifolia
HPP92_023741 Vanilla planifolia
Hund13867 Selenicereus undatus
Hund18842 Selenicereus undatus
Hund20991 Selenicereus undatus
Lalb_Chr11g0075001 Lupinus albus
Lalb_Chr17g0345121 Lupinus albus
Lalb_Chr18g0050971 Lupinus albus
Lj1A136T33 Lonicera japonica
Lj1C957G1 Lonicera japonica
Lj2C1083G2 Lonicera japonica
Lj6g0010333 Lotus japonicus
Lj6g0018627 Lotus japonicus
LjContig00155g0009749 Lotus japonicus
Lsat_1_v5_gn_2_123560 Lactuca sativa
Lsat_1_v5_gn_5_171201 Lactuca sativa
Manes.02G195400 Manihot esculenta
Manes.07G130100 Manihot esculenta
MBI15_g38430_MAGBIO Magnolia biondii
MD01G1153400 Malus domestica
MD03G1068500 Malus domestica
MD07G1222400 Malus domestica
MD11G1072900 Malus domestica
Medtr3g070850 Medicago truncatula
Medtr3g464150 Medicago truncatula
Medtr5g071060 Medicago truncatula
Medtr7g056197 Medicago truncatula
MELO3C008299.2 Cucumis melo
MELO3C020543.2 Cucumis melo
Migut.D00857 Erythranthe guttata
Migut.F00688 Erythranthe guttata
MSTRG.21231 Avicennia marina
Nitab4.5_0000684g0090 Nicotiana tabacum
Nitab4.5_0001150g0030 Nicotiana tabacum
Nitab4.5_0001227g0050 Nicotiana tabacum
Nitab4.5_0001516g0020 Nicotiana tabacum
Nn2g10851 Nelumbo nucifera
Nn2g13139 Nelumbo nucifera
Oeu005839.1 Olea europaea
Oeu021975.2 Olea europaea
Oeu028347.1 Olea europaea
Oeu042629.1 Olea europaea
Oeu045319.1 Olea europaea
Os11g0104300 Oryza sativa ssp. japonica
Os12g0104300 Oryza sativa ssp. japonica
Peaxi162Scf00259g00104 Petunia axillaris
Peaxi162Scf00825g00416 Petunia axillaris
PGR044G1555 Punica granatum
PGR044G1654 Punica granatum
PGR119G0709 Punica granatum
PGSC0003DMG400016941 Solanum tuberosum
PGSC0003DMG400026732 Solanum tuberosum
Phvul.001G243900 Phaseolus vulgaris
Phvul.003G120100 Phaseolus vulgaris
Phvul.006G068500 Phaseolus vulgaris
Phvul.008G223600 Phaseolus vulgaris
Phvul.008G261000 Phaseolus vulgaris
Potri.001G252500 Populus trichocarpa
Potri.008G069100 Populus trichocarpa
Potri.009G046700 Populus trichocarpa
Potri.010G188200 Populus trichocarpa
Prupe.2G250700 Prunus persica
Prupe.6G056400 Prunus persica
Psat2g058160 Pisum sativum
Psat5g129160 Pisum sativum
Psat5g158160 Pisum sativum
PSO017G5049 Papaver somniferum
PSO170G2216 Papaver somniferum
PSO339G0086 Papaver somniferum
PSO339G1780 Papaver somniferum
PSO339G3608 Papaver somniferum
PSO339G3911 Papaver somniferum
PSO339G5803 Papaver somniferum
PSO384G5099 Papaver somniferum
QL01p038534 Quercus lobata
RcHm_v2.0_Chr1g0370371 Rosa chinensis
RcHm_v2.0_Chr5g0069891 Rosa chinensis
Rhsim01G0236800 Rhododendron simsii
Rhsim03G0144300 Rhododendron simsii
Sabra08G0050700 Salix brachista
Sabra09G0034100 Salix brachista
Sabra10G0145000 Salix brachista
Sabra16G0153700 Salix brachista
Sabra16G0153800 Salix brachista
SalBow6G1757 Salvia bowleyana
SalBow6G2689 Salvia bowleyana
Sc11g0005080 Simmondsia chinensis
Sc21g0006410 Simmondsia chinensis
Sc21g0006420 Simmondsia chinensis
Sed0004747 Sechium edule
Sed0025315 Sechium edule
Sed0026367 Sechium edule
SGA_v2.0_scaffold20G09301 Striga asiatica
SGA_v2.0_scaffold44G16700 Striga asiatica
SGA_v2.0_scaffold54G19470 Striga asiatica
SGA_v2.0_scaffold60G21007 Striga asiatica
Solyc06g051460.4 Solanum lycopersicum
Solyc09g055230.3 Solanum lycopersicum
Sopen06g017420 Solanum pennellii
Sopen09g017150 Solanum pennellii
Sp1g05960 Schrenkiella parvula
Sp4g12530 Schrenkiella parvula
Sp4g22480 Schrenkiella parvula
TAR623G0900 Trochodendron aralioides
TAR633G0375 Trochodendron aralioides
TAR636G2550 Trochodendron aralioides
THA.LOC104824318 Tarenaya hassleriana
THA.LOC104826286 Tarenaya hassleriana
THA.LOC104827401 Tarenaya hassleriana
Thecc.09G300100 Theobroma cacao
Thecc.10G015600 Theobroma cacao
Thhalv10006689m.g Eutrema salsugineum
Thhalv10016182m.g Eutrema salsugineum
Thhalv10016208m.g Eutrema salsugineum
TPR.G11215 Trifolium pratense
TPR.G21170 Trifolium pratense
TPR.G34581 Trifolium pratense
TWI31G1030 Tripterygium wilfordii
TWI53G0616 Tripterygium wilfordii
TWI53G1685 Tripterygium wilfordii
TWI73G1249 Tripterygium wilfordii
TWI79G1733 Tripterygium wilfordii
unitig_26.g9452 Utricularia gibba
unitig_749.g13575 Utricularia gibba
vmacro06965 Vaccinium macrocarpon
vmacro14596 Vaccinium macrocarpon
VMungo0251G0449 Vigna mungo
VMungo0251G0624 Vigna mungo
VMungo0540G0434 Vigna mungo
VMungo0647G0364 Vigna mungo
VMungo0647G0659 Vigna mungo
VMungo1383G1088 Vigna mungo
Zm00001eb404750 Zea mays

User provided reference genes

Program Settings