Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p02620 Brassica napus
A06p15960 Brassica napus
A08p05390 Brassica napus
A08p29680 Brassica napus
Aa31LG6G13060 Aethionema arabicum
Aa31LG7G4340 Aethionema arabicum
Actinidia15408 Actinidia chinensis
Actinidia16970 Actinidia chinensis
Actinidia37927 Actinidia chinensis
Ah.05g166680 Amaranthus hybridus
Ah.11g042800 Amaranthus hybridus
AL1G32550 Arabidopsis lyrata
AL1G54330 Arabidopsis lyrata
AL1G54350 Arabidopsis lyrata
AL7G14920 Arabidopsis lyrata
Aqoxy6G02311 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0H1B5V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2PR50U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.86KBF0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L8XTDX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PJHC0L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T3YNI7 Arachis hypogaea
AT1G19835 Arabidopsis thaliana
AT1G47900 Arabidopsis thaliana
AT2G24470 Arabidopsis thaliana
AT4G36120 Arabidopsis thaliana
ATR0996G001 Amborella trichopoda
ATR0996G010 Amborella trichopoda
Atru.chr13.320 Acer truncatum
Atru.chr3.788 Acer truncatum
AUR62035443 Chenopodium quinoa
AUR62035737 Chenopodium quinoa
BcaB03g12899 Brassica carinata
BcaB04g17474 Brassica carinata
BcaB07g32000 Brassica carinata
BcaB07g33806 Brassica carinata
BcaC05g25859 Brassica carinata
BcaC07g37187 Brassica carinata
BcaC07g38998 Brassica carinata
BcaC08g42988 Brassica carinata
BcaNung00762 Brassica carinata
BolC1t00277H Brassica oleracea
BolC5t30533H Brassica oleracea
BolC8t47423H Brassica oleracea
BolC8t49609H Brassica oleracea
BraA01t00248Z Brassica rapa
BraA06t24706Z Brassica rapa
BraA08t32543Z Brassica rapa
BraA08t34903Z Brassica rapa
C01p02910 Brassica napus
C05p18260 Brassica napus
C06p02300 Brassica napus
C08p05830 Brassica napus
C08p19720 Brassica napus
CANSAT25G1938 Cannabis sativa
CARHR020330 Cardamine hirsuta
CARHR037490 Cardamine hirsuta
CARHR244520 Cardamine hirsuta
Carub.0001s1935 Capsella rubella
Carub.0001s3700 Capsella rubella
Carub.0007s0411 Capsella rubella
Ca_02054_v3 Cicer arietinum L.
Ca_13408_v3 Cicer arietinum L.
Ca_24911_v3 Cicer arietinum L.
Cc10_g01870 Coffea canephora
CDE02G0587 Ceratophyllum demersum
CDE02G4609 Ceratophyllum demersum
CDE05G0850 Ceratophyllum demersum
CDE05G1966 Ceratophyllum demersum
CDE09G0447 Ceratophyllum demersum
CDE09G0555 Ceratophyllum demersum
Cfa013930 Carpinus fangiana
Ciclev10000102m.g Citrus clementina
CiPaw.07G152200 Carya illinoinensis
CiPaw.08G064900 Carya illinoinensis
ClCG05G018460 Citrullus lanatus
COL.COLO4_21926 Corchorus olitorius
COL.COLO4_26167 Corchorus olitorius
Cpa.g.sc26.28 Carica papaya
Cpa.g.sc6.234 Carica papaya
Cpa.g.sc6.235 Carica papaya
CsaV3_3G045720 Cucumis sativus L.
CSS0009975 Camellia sinensis var. sinensis
CSS0011582 Camellia sinensis var. sinensis
CSS0022991 Camellia sinensis var. sinensis
CSS0024557 Camellia sinensis var. sinensis
CSS0032181 Camellia sinensis var. sinensis
CSS0035468 Camellia sinensis var. sinensis
CSS0041562 Camellia sinensis var. sinensis
CSS0042532 Camellia sinensis var. sinensis
CSS0047388 Camellia sinensis var. sinensis
DCAR_009932 Daucus carota
DCAR_013857 Daucus carota
DCAR_017492 Daucus carota
DCAR_022435 Daucus carota
Dinv39504 Davidia involucrata
Dinv39505 Davidia involucrata
Duzib041G0583 Durio zibethinus
Duzib116G0522 Durio zibethinus
Duzib147G0808 Durio zibethinus
Duzib147G1082 Durio zibethinus
ECA233G4620 Erigeron canadensis
EL10Ac1g02272 Beta vulgaris
Eucgr.F01634 Eucalyptus grandis
Eucgr.F02084 Eucalyptus grandis
Eucgr.I02359 Eucalyptus grandis
FAN15G1189 Fragaria x ananassa
FAN20G2103 Fragaria x ananassa
FAN26G0108 Fragaria x ananassa
FAN27G2802 Fragaria x ananassa
FAN27G3193 Fragaria x ananassa
FvH4_2g38730 Fragaria vesca
Glyma.01G167200 Glycine max
Glyma.04G025400 Glycine max
Glyma.06G025400 Glycine max
Glyma.11G076100 Glycine max
Glyma.14G217900 Glycine max
Glyma.17G256900 Glycine max
Gohir.A01G111900 Gossypium hirsutum
Gohir.A05G187700 Gossypium hirsutum
Gohir.A06G005200 Gossypium hirsutum
Gohir.A11G041700 Gossypium hirsutum
Gohir.D01G098800 Gossypium hirsutum
Gohir.D05G190700 Gossypium hirsutum
Gohir.D06G001000 Gossypium hirsutum
Gohir.D11G045000 Gossypium hirsutum
Gorai.002G124100 Gossypium raimondii
Gorai.007G048300 Gossypium raimondii
Gorai.009G195900 Gossypium raimondii
Gorai.010G005400 Gossypium raimondii
GSVIVG01009871001 Vitis vinifera
GSVIVG01018797001 Vitis vinifera
HanXRQChr10g0302961 Helianthus annuus
HanXRQChr12g0367181 Helianthus annuus
HanXRQChr16g0531801 Helianthus annuus
Haze_22613 Corylus avellana
Hma1.2p1_0337F.1_g129150 Hydrangea macrophylla
Hma1.2p1_0638F.1_g193700 Hydrangea macrophylla
HPP92_001574 Vanilla planifolia
HPP92_020981 Vanilla planifolia
HPP92_027167 Vanilla planifolia
HPP92_027168 Vanilla planifolia
Hund05195 Selenicereus undatus
Lalb_Chr09g0321821 Lupinus albus
Lalb_Chr11g0061971 Lupinus albus
Lalb_Chr14g0369801 Lupinus albus
Lalb_Chr24g0398761 Lupinus albus
Lj1g0010484 Lotus japonicus
Lj2g0028163 Lotus japonicus
Lj4A27T23 Lonicera japonica
Lj4A795T32 Lonicera japonica
Lj5g0005623 Lotus japonicus
Lsat_1_v5_gn_8_30420 Lactuca sativa
Manes.05G149600 Manihot esculenta
Manes.18G015200 Manihot esculenta
MBI05_g37300_MAGBIO Magnolia biondii
MD08G1015000 Malus domestica
Medtr1g024095 Medicago truncatula
Medtr3g113290 Medicago truncatula
Medtr5g021810 Medicago truncatula
MELO3C003764.2 Cucumis melo
Migut.C00813 Erythranthe guttata
Migut.N03149 Erythranthe guttata
MSTRG.1206 Avicennia marina
MSTRG.22335 Avicennia marina
MSTRG.25231 Avicennia marina
Nitab4.5_0001242g0010 Nicotiana tabacum
Nitab4.5_0001988g0050 Nicotiana tabacum
Nitab4.5_0003536g0030 Nicotiana tabacum
Nn5g29284 Nelumbo nucifera
Nn6g32311 Nelumbo nucifera
Oeu007344.1 Olea europaea
Oeu024531.1 Olea europaea
Oeu027546.2 Olea europaea
Oeu046259.1 Olea europaea
Oeu054705.1 Olea europaea
Oeu054706.1 Olea europaea
Os10g0162400 Oryza sativa ssp. japonica
Peaxi162Scf00186g00065 Petunia axillaris
Peaxi162Scf00438g00019 Petunia axillaris
PGR031G0929 Punica granatum
PGR083G0670 Punica granatum
PGR119G2307 Punica granatum
PGSC0003DMG400003724 Solanum tuberosum
PGSC0003DMG400015142 Solanum tuberosum
PGSC0003DMG400024807 Solanum tuberosum
PGSC0003DMG400024808 Solanum tuberosum
PGSC0003DMG400032290 Solanum tuberosum
PGSC0003DMG401024806 Solanum tuberosum
Phvul.001G008000 Phaseolus vulgaris
Phvul.002G109900 Phaseolus vulgaris
Phvul.009G015700 Phaseolus vulgaris
Potri.002G024400 Populus trichocarpa
Potri.005G237100 Populus trichocarpa
Pp3c20_12080 Physcomitrium patens
Pp3c20_4230 Physcomitrium patens
Pp3c23_10840 Physcomitrium patens
Pp3c23_16640 Physcomitrium patens
Pp3c23_18780 Physcomitrium patens
Pp3c24_19890 Physcomitrium patens
Pp3c3_8660 Physcomitrium patens
Prupe.1G368000 Prunus persica
Psat2g155200 Pisum sativum
Psat5g015120 Pisum sativum
Psat6g003640 Pisum sativum
Psat6g046680 Pisum sativum
PSO170G6790 Papaver somniferum
PSO210G5181 Papaver somniferum
PSO541G2907 Papaver somniferum
PSO675G7683 Papaver somniferum
QL02p011137 Quercus lobata
RcHm_v2.0_Chr6g0302571 Rosa chinensis
Rhsim06G0023100 Rhododendron simsii
Rhsim07G0246200 Rhododendron simsii
Rhsim12G0020200 Rhododendron simsii
Sabra02G0019900 Salix brachista
Sabra05G0183300 Salix brachista
SalBow7G4418 Salvia bowleyana
SalBow8G5386 Salvia bowleyana
Sc02g0008480 Simmondsia chinensis
Sc15g0005090 Simmondsia chinensis
Sed0008717 Sechium edule
Sed0021577 Sechium edule
SEGI_20453 Sequoiadendron giganteum
SEGI_23445 Sequoiadendron giganteum
SEGI_33773 Sequoiadendron giganteum
SEGI_40006 Sequoiadendron giganteum
SGA_v2.0_scaffold11G05900 Striga asiatica
SGA_v2.0_scaffold12G05984 Striga asiatica
SGA_v2.0_scaffold92G28252 Striga asiatica
SHI08079 Sapria himalayana
SMO097G0001 Selaginella moellendorffii
SMO118G0020 Selaginella moellendorffii
SMO174G0081 Selaginella moellendorffii
SMO276G0005 Selaginella moellendorffii
Solyc04g064950.1 Solanum lycopersicum
Solyc04g081260.3 Solanum lycopersicum
Solyc07g045570.3 Solanum lycopersicum
Solyc07g045580.1 Solanum lycopersicum
Solyc07g054970.1 Solanum lycopersicum
Sopen04g034880 Solanum pennellii
Sp1g17630 Schrenkiella parvula
Sp1g34850 Schrenkiella parvula
Sp7g33900 Schrenkiella parvula
TAR376G0849 Trochodendron aralioides
TAR381G0060 Trochodendron aralioides
TAR628G0002 Trochodendron aralioides
THA.LOC104806897 Tarenaya hassleriana
THA.LOC104811389 Tarenaya hassleriana
THA.LOC104819756 Tarenaya hassleriana
Thecc.01G020600 Theobroma cacao
Thecc.08G041600 Theobroma cacao
Thhalv10006694m.g Eutrema salsugineum
Thhalv10011202m.g Eutrema salsugineum
Thhalv10024308m.g Eutrema salsugineum
TPR.G18180 Trifolium pratense
TPR.G18200 Trifolium pratense
TPR.G30293 Trifolium pratense
TPR.G34368 Trifolium pratense
TWI12G1258 Tripterygium wilfordii
TWI36G1447 Tripterygium wilfordii
TWI56G0963 Tripterygium wilfordii
unitig_3.g31658 Utricularia gibba
unitig_3.g31659 Utricularia gibba
unitig_37.g13016 Utricularia gibba
unitig_46.g17963 Utricularia gibba
unitig_748.g7763 Utricularia gibba
unitig_749.g13858 Utricularia gibba
vmacro04340 Vaccinium macrocarpon
vmacro21714 Vaccinium macrocarpon
VMungo0647G1333 Vigna mungo
VMungo1215G0356 Vigna mungo
VMungo1309G1180 Vigna mungo
Zm00001eb010560 Zea mays
Zm00001eb398680 Zea mays

User provided reference genes

Program Settings