Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p35680 Brassica napus
A09p18080 Brassica napus
Aa31LG2G10580 Aethionema arabicum
Aa31LG3G2730 Aethionema arabicum
Aa31LG9G1730 Aethionema arabicum
Aa31LG9G1740 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1410 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3512 Anthoceros agrestis
Actinidia09265 Actinidia chinensis
Actinidia29631 Actinidia chinensis
Ah.04g151070 Amaranthus hybridus
AL2G17530 Arabidopsis lyrata
AL3G21510 Arabidopsis lyrata
AL4G43360 Arabidopsis lyrata
Aqoxy1G00453 Aquilegia oxysepala
Aqoxy2G01801 Aquilegia oxysepala
Aqoxy6G02483 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IRA02K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UY9GAA Arachis hypogaea
AT1G59540 Arabidopsis thaliana
AT3G10180 Arabidopsis thaliana
ATR0580G186 Amborella trichopoda
ATR0739G054 Amborella trichopoda
Atru.chr12.1237 Acer truncatum
Atru.chr13.866 Acer truncatum
AUR62030350 Chenopodium quinoa
AUR62035009 Chenopodium quinoa
AUR62037459 Chenopodium quinoa
AUR62040836 Chenopodium quinoa
BcaB03g11571 Brassica carinata
BcaB04g20213 Brassica carinata
BcaC01g04262 Brassica carinata
BcaC02g10642 Brassica carinata
BcaC04g22168 Brassica carinata
BcaC06g31787 Brassica carinata
BcaC07g42757 Brassica carinata
BolC1t03589H Brassica oleracea
BolC3t16603H Brassica oleracea
BolC4t24193H Brassica oleracea
BolC9t55171H Brassica oleracea
BraA03t12743Z Brassica rapa
BraA09t37442Z Brassica rapa
BraA10t45353Z Brassica rapa
C03p43330 Brassica napus
C04p26110 Brassica napus
C07p23890 Brassica napus
C09p22550 Brassica napus
CAN.G1239.11 Capsicum annuum
CAN.G1239.13 Capsicum annuum
CAN.G1280.50 Capsicum annuum
CANSAT25G0470 Cannabis sativa
CANSAT64G1418 Cannabis sativa
CARHR084660 Cardamine hirsuta
CARHR283830 Cardamine hirsuta
Carub.0002s0589 Capsella rubella
Carub.0003s0933 Capsella rubella
Carub.0003s0934 Capsella rubella
Ca_06978_v3 Cicer arietinum L.
Ca_12040_v3 Cicer arietinum L.
Ca_12048_v3 Cicer arietinum L.
CBR_g23545 Chara braunii
Cc00_g02390 Coffea canephora
Cc00_g02410 Coffea canephora
Cc10_g07590 Coffea canephora
CDE01G0603 Ceratophyllum demersum
CDE05G2293 Ceratophyllum demersum
Cfa013743 Carpinus fangiana
Cfa020015 Carpinus fangiana
Ciclev10004865m.g Citrus clementina
Ciclev10006521m.g Citrus clementina
Ciclev10027806m.g Citrus clementina
CiPaw.07G172400 Carya illinoinensis
CiPaw.08G052100 Carya illinoinensis
CiPaw.09G046800 Carya illinoinensis
ClCG08G016690 Citrullus lanatus
ClCG10G016160 Citrullus lanatus
COL.COLO4_08473 Corchorus olitorius
COL.COLO4_28466 Corchorus olitorius
Cpa.g.sc1212.3 Carica papaya
Cpa.g.sc5.185 Carica papaya
Cpa.g.sc524.3 Carica papaya
Cre13.g568450 Chlamydomonas reinhardtii
CsaV3_2G025940 Cucumis sativus L.
CsaV3_3G040260 Cucumis sativus L.
CSS0016409 Camellia sinensis var. sinensis
CSS0017071 Camellia sinensis var. sinensis
CSS0036916 Camellia sinensis var. sinensis
CSS0038394 Camellia sinensis var. sinensis
DCAR_006071 Daucus carota
DCAR_020061 Daucus carota
Dinv09474 Davidia involucrata
Dinv44933 Davidia involucrata
Duzib093G1309 Durio zibethinus
Duzib106G0433 Durio zibethinus
ECA240G1295 Erigeron canadensis
ECA246G0380 Erigeron canadensis
EL10Ac1g02353 Beta vulgaris
EL10Ac3g07197 Beta vulgaris
Eucgr.A02254 Eucalyptus grandis
Eucgr.F02228 Eucalyptus grandis
FAN01G2633 Fragaria x ananassa
FAN03G2757 Fragaria x ananassa
FAN06G4340 Fragaria x ananassa
FAN15G2617 Fragaria x ananassa
FAN20G2284 Fragaria x ananassa
FAN24G0204 Fragaria x ananassa
FAN25G3688 Fragaria x ananassa
FAN27G1967 Fragaria x ananassa
FAN28G0605 Fragaria x ananassa
FAN28G0852 Fragaria x ananassa
FAN28G1742 Fragaria x ananassa
FAN28G2091 Fragaria x ananassa
FvH4_2g32710 Fragaria vesca
FvH4_7g02901 Fragaria vesca
Glyma.14G089072 Glycine max
Glyma.17G208400 Glycine max
Glyma.17G233200 Glycine max
Gohir.A02G080300 Gossypium hirsutum
Gohir.A06G025300 Gossypium hirsutum
Gohir.A11G307601 Gossypium hirsutum
Gohir.D02G088200 Gossypium hirsutum
Gohir.D06G022400 Gossypium hirsutum
Gohir.D06G027000 Gossypium hirsutum
Gohir.D11G323100 Gossypium hirsutum
Gorai.005G098800 Gossypium raimondii
Gorai.007G353100 Gossypium raimondii
Gorai.010G027000 Gossypium raimondii
GSVIVG01009305001 Vitis vinifera
GSVIVG01033614001 Vitis vinifera
HanXRQChr05g0163591 Helianthus annuus
HanXRQChr13g0414111 Helianthus annuus
Haze_02873 Corylus avellana
Haze_16236 Corylus avellana
Haze_20204 Corylus avellana
Haze_22395 Corylus avellana
Haze_22403 Corylus avellana
Hma1.2p1_1170F.1_g263440 Hydrangea macrophylla
HPP92_006856 Vanilla planifolia
HPP92_006873 Vanilla planifolia
HPP92_010739 Vanilla planifolia
Hund05279 Selenicereus undatus
Hund19103 Selenicereus undatus
Lalb_Chr14g0368061 Lupinus albus
Lalb_Chr14g0368071 Lupinus albus
Lalb_Chr21g0316671 Lupinus albus
Lalb_Chr21g0316681 Lupinus albus
Lalb_Chr22g0355771 Lupinus albus
Lj2A398G40 Lonicera japonica
Lj2A398T48 Lonicera japonica
Lj2A398T49 Lonicera japonica
Lj4A75G32 Lonicera japonica
Lj5g0004487 Lotus japonicus
Lj5g0010376 Lotus japonicus
Lj5g0022233 Lotus japonicus
Lj5g0023255 Lotus japonicus
Lsat_1_v5_gn_6_108441 Lactuca sativa
Lsat_1_v5_gn_6_79340 Lactuca sativa
Manes.05G183300 Manihot esculenta
Manes.12G155600 Manihot esculenta
Mapoly0034s0119 Marchantia polymorpha
Mapoly0060s0012 Marchantia polymorpha
MBI14_g09096_MAGBIO Magnolia biondii
MBI14_g34249_MAGBIO Magnolia biondii
MBI16_g32084_MAGBIO Magnolia biondii
MCO07G765 Micromonas commoda
MCO13G355 Micromonas commoda
MD08G1078700 Malus domestica
MD12G1093000 Malus domestica
MD12G1093100 Malus domestica
MD14G1085100 Malus domestica
MD15G1065700 Malus domestica
Medtr1g017540 Medicago truncatula
Medtr1g484960 Medicago truncatula
MELO3C009763.2 Cucumis melo
MELO3C010787.2 Cucumis melo
Migut.C00475 Erythranthe guttata
Migut.J01665 Erythranthe guttata
Migut.O00025 Erythranthe guttata
MSTRG.1017 Avicennia marina
MSTRG.6373 Avicennia marina
Nitab4.5_0001426g0030 Nicotiana tabacum
Nitab4.5_0002162g0030 Nicotiana tabacum
Nitab4.5_0002208g0050 Nicotiana tabacum
Nitab4.5_0002796g0020 Nicotiana tabacum
Nn5g30658 Nelumbo nucifera
Nn6g34521 Nelumbo nucifera
Nn7g36671 Nelumbo nucifera
Oeu048569.1 Olea europaea
Oeu048570.1 Olea europaea
Oeu059334.1 Olea europaea
Oeu059363.3 Olea europaea
Os09g0421200 Oryza sativa ssp. japonica
Os11g0552600 Oryza sativa ssp. japonica
Peaxi162Scf00340g00071 Petunia axillaris
Peaxi162Scf01010g00017 Petunia axillaris
PGR031G0176 Punica granatum
PGR031G0545 Punica granatum
PGSC0003DMG400002958 Solanum tuberosum
PGSC0003DMG400004917 Solanum tuberosum
Phvul.001G029600 Phaseolus vulgaris
Phvul.001G052600 Phaseolus vulgaris
Potri.006G040700 Populus trichocarpa
Potri.014G013300 Populus trichocarpa
Pp3c22_20430 Physcomitrium patens
Pp3c3_10820 Physcomitrium patens
Pp3c6_21870 Physcomitrium patens
PRCOL_00003120 Prasinoderma coloniale
Prupe.1G419600 Prunus persica
Prupe.7G041000 Prunus persica
Psat6g017440 Pisum sativum
Psat6g089440 Pisum sativum
Psat7g032320 Pisum sativum
PSO384G4909 Papaver somniferum
PSO541G1283 Papaver somniferum
PSO675G0923 Papaver somniferum
QL07p009794 Quercus lobata
QL07p009810 Quercus lobata
QL12p038572 Quercus lobata
RcHm_v2.0_Chr1g0323861 Rosa chinensis
RcHm_v2.0_Chr6g0309971 Rosa chinensis
Rhsim02G0144000 Rhododendron simsii
Rhsim07G0217600 Rhododendron simsii
Rhsim08G0184500 Rhododendron simsii
Sabra02G0091400 Salix brachista
Sabra06G0027600 Salix brachista
Sabra14G0008100 Salix brachista
SalBow6G3141 Salvia bowleyana
Sc13g0001240 Simmondsia chinensis
Sc15g0005400 Simmondsia chinensis
Sed0004256 Sechium edule
Sed0010747 Sechium edule
SEGI_08432 Sequoiadendron giganteum
SEGI_10690 Sequoiadendron giganteum
SEGI_22073 Sequoiadendron giganteum
SEGI_32718 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30298 Striga asiatica
SGA_v2.0_scaffold14G07077 Striga asiatica
SGA_v2.0_scaffold57G20198 Striga asiatica
SHI26238 Sapria himalayana
SMO201G0089 Selaginella moellendorffii
SMO340G0121 Selaginella moellendorffii
SMO356G0444 Selaginella moellendorffii
SMO364G0904 Selaginella moellendorffii
Solyc04g040110.3 Solanum lycopersicum
Solyc04g077540.4 Solanum lycopersicum
Sopen04g016330 Solanum pennellii
Sopen04g031170 Solanum pennellii
Sp2g05010 Schrenkiella parvula
Sp3g08460 Schrenkiella parvula
TAR628G0964 Trochodendron aralioides
TAR633G0479 Trochodendron aralioides
THA.LOC104816404 Tarenaya hassleriana
THA.LOC104816760 Tarenaya hassleriana
Thecc.05G137000 Theobroma cacao
Thecc.08G085000 Theobroma cacao
Thhalv10019913m.g Eutrema salsugineum
Thhalv10023277m.g Eutrema salsugineum
TPR.G13004 Trifolium pratense
TPR.G2588 Trifolium pratense
TWI56G0102 Tripterygium wilfordii
TWI77G1020 Tripterygium wilfordii
unitig_21.g20920 Utricularia gibba
unitig_26.g9868 Utricularia gibba
vmacro04596 Vaccinium macrocarpon
vmacro05228 Vaccinium macrocarpon
vmacro05229 Vaccinium macrocarpon
VMungo0647G0305 Vigna mungo
VMungo0647G2525 Vigna mungo
VMungo0647G2543 Vigna mungo
Zm00001eb173890 Zea mays
Zm00001eb195540 Zea mays
Zm00001eb197580 Zea mays
Zm00001eb313020 Zea mays

User provided reference genes

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