Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p32490 Brassica napus
A08p10040 Brassica napus
Aa31LG5G10710 Aethionema arabicum
Aa31LG9G17980 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.106 Anthoceros agrestis
Actinidia13463 Actinidia chinensis
Actinidia19101 Actinidia chinensis
Actinidia35757 Actinidia chinensis
Ah.11g051520 Amaranthus hybridus
Aqoxy3G01084 Aquilegia oxysepala
Aqoxy3G02891 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2R24AU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6DZ4AC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9ZWK3I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FIBC9W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QY9S03 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y6HHW7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YRX3D0 Arachis hypogaea
AT1G43310 Arabidopsis thaliana
AT3G01550 Arabidopsis thaliana
AT5G33320 Arabidopsis thaliana
ATR1091G082 Amborella trichopoda
Atru.chr6.2340 Acer truncatum
Atru.chr9.2490 Acer truncatum
AUR62000907 Chenopodium quinoa
AUR62005067 Chenopodium quinoa
AUR62008198 Chenopodium quinoa
AUR62023890 Chenopodium quinoa
AUR62030951 Chenopodium quinoa
BcaB04g18079 Brassica carinata
BcaC01g04524 Brassica carinata
BcaC07g37694 Brassica carinata
BolC8t48065H Brassica oleracea
BraA03t12418Z Brassica rapa
BraA08t33000Z Brassica rapa
C03p39570 Brassica napus
CAN.G1305.33 Capsicum annuum
CAN.G206.11 Capsicum annuum
CANSAT64G1540 Cannabis sativa
CANSAT80G1497 Cannabis sativa
CARHR075370 Cardamine hirsuta
CARHR217060 Cardamine hirsuta
Carub.0003s0052 Capsella rubella
Carub.0007s3069 Capsella rubella
Ca_04177_v3 Cicer arietinum L.
Ca_16167_v3 Cicer arietinum L.
Ca_21932_v3 Cicer arietinum L.
CBR_g30318 Chara braunii
Cc04_g14240 Coffea canephora
Cc07_g01970 Coffea canephora
CDE04G2465 Ceratophyllum demersum
CDE12G0842 Ceratophyllum demersum
Cfa019146 Carpinus fangiana
Ciclev10017852m.g Citrus clementina
Ciclev10020405m.g Citrus clementina
CiPaw.04G026600 Carya illinoinensis
CiPaw.11G024900 Carya illinoinensis
CiPaw.12G027600 Carya illinoinensis
ClCG01G013200 Citrullus lanatus
ClCG09G019120 Citrullus lanatus
COL.COLO4_29052 Corchorus olitorius
COL.COLO4_30062 Corchorus olitorius
Cpa.g.sc108.30 Carica papaya
Cpa.g.sc76.37 Carica papaya
Cre06.g263850 Chlamydomonas reinhardtii
Cre08.g379350 Chlamydomonas reinhardtii
CsaV3_1G008560 Cucumis sativus L.
CsaV3_5G027270 Cucumis sativus L.
CSS0002656 Camellia sinensis var. sinensis
CSS0016440 Camellia sinensis var. sinensis
CSS0025053 Camellia sinensis var. sinensis
CSS0038693 Camellia sinensis var. sinensis
CSS0049861 Camellia sinensis var. sinensis
DCAR_003132 Daucus carota
DCAR_021571 Daucus carota
DCAR_026143 Daucus carota
DCAR_028019 Daucus carota
Dinv20642 Davidia involucrata
Dinv35087 Davidia involucrata
Dinv38577 Davidia involucrata
Duzib068G1149 Durio zibethinus
Duzib147G0450 Durio zibethinus
Duzib147G1066 Durio zibethinus
Duzib147G1649 Durio zibethinus
Duzib205G0222 Durio zibethinus
ECA238G3816 Erigeron canadensis
ECA246G1454 Erigeron canadensis
ECA247G2307 Erigeron canadensis
EL10Ac4g09277 Beta vulgaris
EL10Ac5g10735 Beta vulgaris
Eucgr.A02829 Eucalyptus grandis
Eucgr.B00299 Eucalyptus grandis
Eucgr.G00373 Eucalyptus grandis
Eucgr.J02199 Eucalyptus grandis
Eucgr.J02222 Eucalyptus grandis
Eucgr.K02835 Eucalyptus grandis
FAN02G0549 Fragaria x ananassa
FAN04G1295 Fragaria x ananassa
FAN05G5429 Fragaria x ananassa
FAN08G3107 Fragaria x ananassa
FAN13G2525 Fragaria x ananassa
FAN18G4045 Fragaria x ananassa
FAN18G4327 Fragaria x ananassa
FvH4_5g05430 Fragaria vesca
FvH4_6g51010 Fragaria vesca
Glyma.04G184300 Glycine max
Glyma.06G181600 Glycine max
Glyma.17G088500 Glycine max
Glyma.19G005900 Glycine max
Gohir.A05G357800 Gossypium hirsutum
Gohir.A07G063200 Gossypium hirsutum
Gohir.A12G274700 Gossypium hirsutum
Gohir.D04G056200 Gossypium hirsutum
Gohir.D07G067900 Gossypium hirsutum
Gohir.D12G275400 Gossypium hirsutum
Gorai.001G071400 Gossypium raimondii
Gorai.008G295900 Gossypium raimondii
Gorai.012G063100 Gossypium raimondii
GSVIVG01007730001 Vitis vinifera
GSVIVG01032441001 Vitis vinifera
HanXRQChr02g0036001 Helianthus annuus
HanXRQChr05g0149571 Helianthus annuus
HanXRQChr05g0155751 Helianthus annuus
HanXRQChr07g0198891 Helianthus annuus
HanXRQChr07g0198931 Helianthus annuus
Haze_07512 Corylus avellana
Haze_14700 Corylus avellana
Hma1.2p1_0592F.1_g185410 Hydrangea macrophylla
Hma1.2p1_0858F.1_g229240 Hydrangea macrophylla
Hma1.2p1_0865F.1_g230090 Hydrangea macrophylla
Hma1.2p1_2165F.1_g315810 Hydrangea macrophylla
Hma1.2p1_2469F.1_g322700 Hydrangea macrophylla
HPP92_009706 Vanilla planifolia
HPP92_024707 Vanilla planifolia
Hund02749 Selenicereus undatus
Hund07021 Selenicereus undatus
Hund09445 Selenicereus undatus
Lalb_Chr02g0160461 Lupinus albus
Lalb_Chr08g0236571 Lupinus albus
Lalb_Chr12g0201641 Lupinus albus
Lalb_Chr13g0297741 Lupinus albus
Lalb_Chr23g0273271 Lupinus albus
Lj1g0001520 Lotus japonicus
Lj2g0024157 Lotus japonicus
Lj4g0020457 Lotus japonicus
Lj7C595T16 Lonicera japonica
Lj9C447T2 Lonicera japonica
Lsat_1_v5_gn_1_27161 Lactuca sativa
Lsat_1_v5_gn_2_91600 Lactuca sativa
Lsat_1_v5_gn_5_14941 Lactuca sativa
Manes.06G105900 Manihot esculenta
Manes.14G064800 Manihot esculenta
Manes.15G149000 Manihot esculenta
Mapoly0083s0074 Marchantia polymorpha
MBI10_g28001_MAGBIO Magnolia biondii
MBI16_g30840_MAGBIO Magnolia biondii
MD06G1172800 Malus domestica
MD09G1029600 Malus domestica
MD14G1178800 Malus domestica
MD17G1031600 Malus domestica
Medtr3g077640 Medicago truncatula
Medtr4g105630 Medicago truncatula
Medtr6g005480 Medicago truncatula
MELO3C002270.2 Cucumis melo
MELO3C021558.2 Cucumis melo
Migut.D01943 Erythranthe guttata
Migut.K01386 Erythranthe guttata
Migut.O00094 Erythranthe guttata
MSTRG.15521 Avicennia marina
MSTRG.23136 Avicennia marina
Nitab4.5_0000025g0550 Nicotiana tabacum
Nitab4.5_0000514g0110 Nicotiana tabacum
Nitab4.5_0001724g0010 Nicotiana tabacum
Nitab4.5_0002403g0090 Nicotiana tabacum
Nitab4.5_0002739g0080 Nicotiana tabacum
Nitab4.5_0008215g0020 Nicotiana tabacum
Nn2g10213 Nelumbo nucifera
Nn3g16830 Nelumbo nucifera
Nn4g22727 Nelumbo nucifera
Oeu023434.1 Olea europaea
Oeu024698.1 Olea europaea
Oeu034067.3 Olea europaea
Oeu035999.1 Olea europaea
Oeu040836.1 Olea europaea
Oeu048635.1 Olea europaea
Oeu049195.1 Olea europaea
Os01g0172100 Oryza sativa ssp. japonica
Os08g0344600 Oryza sativa ssp. japonica
Os09g0297400 Oryza sativa ssp. japonica
Peaxi162Scf00089g01842 Petunia axillaris
Peaxi162Scf00129g01336 Petunia axillaris
Peaxi162Scf00255g01119 Petunia axillaris
PGR044G2621 Punica granatum
PGR083G1174 Punica granatum
PGR083G2768 Punica granatum
PGSC0003DMG400000484 Solanum tuberosum
PGSC0003DMG400018150 Solanum tuberosum
Phvul.003G201400 Phaseolus vulgaris
Phvul.004G011300 Phaseolus vulgaris
Phvul.009G177600 Phaseolus vulgaris
Potri.001G347300 Populus trichocarpa
Potri.012G082100 Populus trichocarpa
Potri.015G077900 Populus trichocarpa
Pp3c20_5750 Physcomitrium patens
PRCOL_00002692 Prasinoderma coloniale
PRCOL_00005315 Prasinoderma coloniale
Prupe.3G287800 Prunus persica
Prupe.5G172100 Prunus persica
Psat0ss3962g0320 Pisum sativum
Psat1g055840 Pisum sativum
Psat4g057600 Pisum sativum
PSO017G5517 Papaver somniferum
PSO063G7194 Papaver somniferum
PSO478G2472 Papaver somniferum
PSO832G0329 Papaver somniferum
QL02p075638 Quercus lobata
QL10p010673 Quercus lobata
QL10p011085 Quercus lobata
RcHm_v2.0_Chr2g0172541 Rosa chinensis
RcHm_v2.0_Chr7g0193401 Rosa chinensis
Rhsim08G0052700 Rhododendron simsii
Rhsim08G0173600 Rhododendron simsii
Rhsim12G0165000 Rhododendron simsii
Sabra15G0102500 Salix brachista
Sabra16G0226900 Salix brachista
SalBow5G0429 Salvia bowleyana
SalBow5G0477 Salvia bowleyana
SalBow6G1493 Salvia bowleyana
SalBow6G3291 Salvia bowleyana
SalBow7G0362 Salvia bowleyana
Sc12g0005260 Simmondsia chinensis
Sed0003826 Sechium edule
Sed0007708 Sechium edule
Sed0011704 Sechium edule
SEGI_07711 Sequoiadendron giganteum
SGA_v2.0_scaffold114G31827 Striga asiatica
SGA_v2.0_scaffold30G12423 Striga asiatica
SGA_v2.0_scaffold7G04143 Striga asiatica
SGA_v2.0_scaffold90G27904 Striga asiatica
SMO137G0040 Selaginella moellendorffii
Solyc02g086650.3 Solanum lycopersicum
Solyc03g112870.3 Solanum lycopersicum
Sopen02g031400 Solanum pennellii
Sopen03g031950 Solanum pennellii
Sp3g00500 Schrenkiella parvula
Sp7g07560 Schrenkiella parvula
TAR374G0660 Trochodendron aralioides
TAR622G0003 Trochodendron aralioides
TAR629G1641 Trochodendron aralioides
THA.LOC104808313 Tarenaya hassleriana
THA.LOC104821090 Tarenaya hassleriana
THA.LOC104824979 Tarenaya hassleriana
Thecc.03G013900 Theobroma cacao
Thecc.04G013600 Theobroma cacao
Thhalv10020920m.g Eutrema salsugineum
TPR.G25317 Trifolium pratense
TPR.G37463 Trifolium pratense
TPR.G8714 Trifolium pratense
TWI14G1248 Tripterygium wilfordii
TWI23G0102 Tripterygium wilfordii
TWI36G0246 Tripterygium wilfordii
unitig_0.g796 Utricularia gibba
unitig_60.g25800 Utricularia gibba
vmacro16615 Vaccinium macrocarpon
vmacro18264 Vaccinium macrocarpon
vmacro19396 Vaccinium macrocarpon
VMungo0464G0033 Vigna mungo
VMungo1215G2072 Vigna mungo
VMungo1309G2349 Vigna mungo
Zm00001eb042970 Zea mays
Zm00001eb097690 Zea mays
Zm00001eb122890 Zea mays
Zm00001eb164180 Zea mays
Zm00001eb283310 Zea mays
Zm00001eb309230 Zea mays

User provided reference genes

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