Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p42190 Brassica napus
A03p00990 Brassica napus
A03p19740 Brassica napus
A10p32820 Brassica napus
Aa31LG1G22000 Aethionema arabicum
Aa31LG3G2130 Aethionema arabicum
Aa31sc26G10 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4910 Anthoceros agrestis
Actinidia11223 Actinidia chinensis
Actinidia13102 Actinidia chinensis
Ah.15g092130 Amaranthus hybridus
AL3G20920 Arabidopsis lyrata
AL4G31910 Arabidopsis lyrata
AL6G12320 Arabidopsis lyrata
Aqoxy230s004 Aquilegia oxysepala
Aqoxy4G02795 Aquilegia oxysepala
Aqoxy4G03209 Aquilegia oxysepala
Aqoxy4G03210 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.78ITCW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AVC52A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AX2CQA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EI92TG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FPRU5H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VJQ4N5 Arachis hypogaea
AT2G35795 Arabidopsis thaliana
AT3G09700 Arabidopsis thaliana
AT5G03030 Arabidopsis thaliana
ATR0585G090 Amborella trichopoda
ATR0763G030 Amborella trichopoda
Atru.chr12.648 Acer truncatum
Atru.chr12.675 Acer truncatum
Atru.chr8.2563 Acer truncatum
Atru.chr9.1569 Acer truncatum
AUR62020777 Chenopodium quinoa
AUR62027925 Chenopodium quinoa
AUR62027927 Chenopodium quinoa
AUR62040043 Chenopodium quinoa
BcaB01g03880 Brassica carinata
BcaB01g05863 Brassica carinata
BcaB05g21856 Brassica carinata
BcaB06g28873 Brassica carinata
BcaC01g05706 Brassica carinata
BcaC03g13038 Brassica carinata
BcaC06g32024 Brassica carinata
BcaC09g48128 Brassica carinata
BcaNung04732 Brassica carinata
BcaNung06343 Brassica carinata
BolC1t05439H Brassica oleracea
BolC2t06072H Brassica oleracea
BolC3t12687H Brassica oleracea
BolC3t14700H Brassica oleracea
BolC9t60105H Brassica oleracea
BraA01t04287Z Brassica rapa
BraA02t04739Z Brassica rapa
BraA03t09481Z Brassica rapa
BraA03t11226Z Brassica rapa
BraA10t45319Z Brassica rapa
C02p00740 Brassica napus
C03p01280 Brassica napus
C03p22990 Brassica napus
C09p73720 Brassica napus
CAN.G1676.5 Capsicum annuum
CAN.G933.5 Capsicum annuum
CANSAT25G2891 Cannabis sativa
CANSAT56G1547 Cannabis sativa
CARHR084120 Cardamine hirsuta
CARHR130050 Cardamine hirsuta
CARHR210290 Cardamine hirsuta
Carub.0003s0879 Capsella rubella
Carub.0004s1756 Capsella rubella
Carub.0006s0182 Capsella rubella
Ca_09521_v3 Cicer arietinum L.
Ca_11454_v3 Cicer arietinum L.
Ca_29642_v3 Cicer arietinum L.
CBR_g8266 Chara braunii
Cc04_g09030 Coffea canephora
Cc09_g02820 Coffea canephora
CDE04G0859 Ceratophyllum demersum
Cfa020678 Carpinus fangiana
Ciclev10013153m.g Citrus clementina
Ciclev10033118m.g Citrus clementina
CiPaw.01G276000 Carya illinoinensis
CiPaw.02G176200 Carya illinoinensis
CiPaw.10G137200 Carya illinoinensis
CiPaw.16G100300 Carya illinoinensis
ClCG04G008830 Citrullus lanatus
COL.COLO4_27073 Corchorus olitorius
Cpa.g.sc53.30 Carica papaya
Cpa.g.sc54.55 Carica papaya
Cpa.g.sc54.58 Carica papaya
Cre09.g396363 Chlamydomonas reinhardtii
CsaV3_4G024310 Cucumis sativus L.
CsaV3_5G036450 Cucumis sativus L.
CSS0001302 Camellia sinensis var. sinensis
CSS0005338 Camellia sinensis var. sinensis
CSS0041851 Camellia sinensis var. sinensis
DCAR_014965 Daucus carota
DCAR_015280 Daucus carota
DCAR_017731 Daucus carota
Dinv25430 Davidia involucrata
Dinv31350 Davidia involucrata
Dinv37259 Davidia involucrata
Duzib093G0977 Durio zibethinus
Duzib106G0870 Durio zibethinus
Duzib114G0717 Durio zibethinus
ECA233G1244 Erigeron canadensis
ECA238G4806 Erigeron canadensis
EL10Ac2g03565 Beta vulgaris
EL10Ac6g15580 Beta vulgaris
EL10Ac7g16502 Beta vulgaris
Eucgr.A01173 Eucalyptus grandis
Eucgr.G02806 Eucalyptus grandis
Eucgr.H00599 Eucalyptus grandis
FAN01G1057 Fragaria x ananassa
FAN02G1497 Fragaria x ananassa
FAN03G2724 Fragaria x ananassa
FAN05G2704 Fragaria x ananassa
FAN06G0671 Fragaria x ananassa
FAN09G0979 Fragaria x ananassa
FAN10G0798 Fragaria x ananassa
FAN14G5381 Fragaria x ananassa
FvH4_6g15420 Fragaria vesca
FvH4_7g20090 Fragaria vesca
Glyma.05G083800 Glycine max
Glyma.10G049900 Glycine max
Glyma.13G137400 Glycine max
Glyma.17G185100 Glycine max
Gohir.A01G216700 Gossypium hirsutum
Gohir.A05G344900 Gossypium hirsutum
Gohir.D01G205500 Gossypium hirsutum
Gohir.D04G083300 Gossypium hirsutum
Gorai.002G249800 Gossypium raimondii
Gorai.012G094000 Gossypium raimondii
GSVIVG01016322001 Vitis vinifera
GSVIVG01025634001 Vitis vinifera
GSVIVG01029410001 Vitis vinifera
HanXRQChr02g0051891 Helianthus annuus
HanXRQChr07g0200391 Helianthus annuus
HanXRQChr08g0214101 Helianthus annuus
HanXRQChr13g0418051 Helianthus annuus
HanXRQChr14g0440771 Helianthus annuus
Haze_16930 Corylus avellana
Haze_20638 Corylus avellana
Haze_20639 Corylus avellana
HPP92_001041 Vanilla planifolia
HPP92_019555 Vanilla planifolia
Hund13970 Selenicereus undatus
Hund19337 Selenicereus undatus
Hund20174 Selenicereus undatus
Lalb_Chr02g0156791 Lupinus albus
Lalb_Chr21g0314701 Lupinus albus
Lj1g0006699 Lotus japonicus
Lj2g0009387 Lotus japonicus
Lj3g0025818 Lotus japonicus
Lj5g0012657 Lotus japonicus
Lsat_1_v5_gn_2_114100 Lactuca sativa
Lsat_1_v5_gn_6_29761 Lactuca sativa
Lsat_1_v5_gn_6_29881 Lactuca sativa
Lsat_1_v5_gn_6_29921 Lactuca sativa
Lsat_1_v5_gn_9_1381 Lactuca sativa
Manes.02G021600 Manihot esculenta
Manes.02G141900 Manihot esculenta
Manes.10G043200 Manihot esculenta
Mapoly0034s0032 Marchantia polymorpha
Mapoly0226s0002 Marchantia polymorpha
MBI05_g24962_MAGBIO Magnolia biondii
MBI18_g29059_MAGBIO Magnolia biondii
MCO07G643 Micromonas commoda
MD01G1130500 Malus domestica
MD04G1103700 Malus domestica
MD07G1178600 Malus domestica
MD12G1123600 Malus domestica
MD12G1123800 Malus domestica
Medtr1g066810 Medicago truncatula
Medtr7g117745 Medicago truncatula
MELO3C012443.2 Cucumis melo
MELO3C014259.2 Cucumis melo
Migut.N01269 Erythranthe guttata
Migut.O00240 Erythranthe guttata
MSTRG.23200 Avicennia marina
MSTRG.27681 Avicennia marina
MSTRG.5419 Avicennia marina
Nitab4.5_0000061g0110 Nicotiana tabacum
Nitab4.5_0000669g0200 Nicotiana tabacum
Nitab4.5_0000754g0100 Nicotiana tabacum
Nitab4.5_0002049g0040 Nicotiana tabacum
Nitab4.5_0002771g0040 Nicotiana tabacum
Nitab4.5_0003116g0040 Nicotiana tabacum
Nitab4.5_0003973g0020 Nicotiana tabacum
Nitab4.5_0012065g0030 Nicotiana tabacum
Nn2g10681 Nelumbo nucifera
Nn7g37974 Nelumbo nucifera
Oeu061202.1 Olea europaea
Os01g0157800 Oryza sativa ssp. japonica
Os03g0776900 Oryza sativa ssp. japonica
Os07g0192300 Oryza sativa ssp. japonica
Peaxi162Scf00005g04413 Petunia axillaris
Peaxi162Scf00643g00063 Petunia axillaris
Peaxi162Scf01604g00015 Petunia axillaris
PGR004G0943 Punica granatum
PGR083G0585 Punica granatum
PGR142G3680 Punica granatum
PGSC0003DMG400001767 Solanum tuberosum
PGSC0003DMG400017591 Solanum tuberosum
PGSC0003DMG400027048 Solanum tuberosum
Phvul.004G075400 Phaseolus vulgaris
Phvul.007G164200 Phaseolus vulgaris
Potri.006G131200 Populus trichocarpa
Potri.008G043500 Populus trichocarpa
Potri.012G038800 Populus trichocarpa
Pp3c3_28540 Physcomitrium patens
PRCOL_00000195 Prasinoderma coloniale
Prupe.2G217700 Prunus persica
Prupe.6G240700 Prunus persica
Psat3g001760 Pisum sativum
Psat6g070400 Pisum sativum
PSO339G2171 Papaver somniferum
PSO384G1148 Papaver somniferum
PSO541G0626 Papaver somniferum
PSO675G2804 Papaver somniferum
PSO675G4494 Papaver somniferum
PSO675G6518 Papaver somniferum
QL07p045211 Quercus lobata
QL08p056722 Quercus lobata
QL10p032875 Quercus lobata
RcHm_v2.0_Chr1g0364051 Rosa chinensis
RcHm_v2.0_Chr3g0468901 Rosa chinensis
RcHm_v2.0_Chr6g0264141 Rosa chinensis
Rhsim04G0150400 Rhododendron simsii
Rhsim09G0154100 Rhododendron simsii
RhsimUnG0116900 Rhododendron simsii
Sabra06G0103000 Salix brachista
Sabra12G0027300 Salix brachista
SalBow3G0379 Salvia bowleyana
SalBow5G1414 Salvia bowleyana
SalBow5G2896 Salvia bowleyana
Sc02g0002000 Simmondsia chinensis
Sc20g0002130 Simmondsia chinensis
Sed0003128 Sechium edule
Sed0005776 Sechium edule
Sed0009518 Sechium edule
SEGI_20726 Sequoiadendron giganteum
SGA_v2.0_scaffold25G10766 Striga asiatica
SGA_v2.0_scaffold58G20481 Striga asiatica
SMO197G0097 Selaginella moellendorffii
Solyc06g072330.3 Solanum lycopersicum
Solyc09g007390.3 Solanum lycopersicum
Solyc10g086040.2 Solanum lycopersicum
Sopen06g028700 Solanum pennellii
Sopen09g002290 Solanum pennellii
Sopen10g035410 Solanum pennellii
Sp3g08040 Schrenkiella parvula
Sp4g18060 Schrenkiella parvula
Sp6g39660 Schrenkiella parvula
TAR371G1091 Trochodendron aralioides
TAR623G0427 Trochodendron aralioides
TAR629G1080 Trochodendron aralioides
TAR633G1123 Trochodendron aralioides
THA.LOC104816322 Tarenaya hassleriana
Thecc.05G054700 Theobroma cacao
Thecc.10G068800 Theobroma cacao
Thhalv10015062m.g Eutrema salsugineum
Thhalv10017453m.g Eutrema salsugineum
Thhalv10021800m.g Eutrema salsugineum
TPR.G4798 Trifolium pratense
TWI63G0107 Tripterygium wilfordii
TWI74G1165 Tripterygium wilfordii
TWI81G0449 Tripterygium wilfordii
unitig_8.g3878 Utricularia gibba
vmacro04887 Vaccinium macrocarpon
vmacro08703 Vaccinium macrocarpon
vmacro20054 Vaccinium macrocarpon
VMungo0464G0269 Vigna mungo
Zm00001eb059310 Zea mays
Zm00001eb123710 Zea mays
Zm00001eb412610 Zea mays

User provided reference genes

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