Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p19640 Brassica napus
A06p15410 Brassica napus
A07p29130 Brassica napus
A07p40600 Brassica napus
Aa31LG4G5170 Aethionema arabicum
Aa31LG4G5420 Aethionema arabicum
Aa31LG7G3970 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1652 Anthoceros agrestis
Actinidia02677 Actinidia chinensis
Actinidia24449 Actinidia chinensis
Actinidia24450 Actinidia chinensis
Actinidia29945 Actinidia chinensis
Actinidia30248 Actinidia chinensis
Actinidia38488 Actinidia chinensis
Actinidia39628 Actinidia chinensis
Actinidia39629 Actinidia chinensis
Ah.09g229230 Amaranthus hybridus
AL1G31840 Arabidopsis lyrata
AL2G34850 Arabidopsis lyrata
Aqoxy6G00564 Aquilegia oxysepala
Aqoxy7G04090 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.39SMC6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CJ7TKV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F6FJSK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WITA5J Arachis hypogaea
AT1G74960 Arabidopsis thaliana
ATR0681G384 Amborella trichopoda
Atru.chr7.1750 Acer truncatum
AUR62025278 Chenopodium quinoa
AUR62028282 Chenopodium quinoa
BcaB02g06976 Brassica carinata
BcaB05g24880 Brassica carinata
BcaB07g31942 Brassica carinata
BcaC03g15536 Brassica carinata
BcaC08g46929 Brassica carinata
BcaC08g46960 Brassica carinata
BcaNung06475 Brassica carinata
BolC2t09255H Brassica oleracea
BolC5t30471H Brassica oleracea
BolC6t38418H Brassica oleracea
BolC6t39934H Brassica oleracea
BraA02t07000Z Brassica rapa
BraA06t24654Z Brassica rapa
BraA07t30552Z Brassica rapa
BraA07t31604Z Brassica rapa
C02p32170 Brassica napus
C05p17660 Brassica napus
C06p32990 Brassica napus
C06p48970 Brassica napus
CAN.G52.9 Capsicum annuum
CAN.G816.16 Capsicum annuum
CAN.G862.35 Capsicum annuum
CANSAT56G0799 Cannabis sativa
CANSAT56G0994 Cannabis sativa
CANSAT56G1663 Cannabis sativa
CARHR019860 Cardamine hirsuta
CARHR068280 Cardamine hirsuta
Carub.0001s1886 Capsella rubella
Carub.0002s2175 Capsella rubella
Ca_02245_v3 Cicer arietinum L.
Ca_21330_v3 Cicer arietinum L.
CBR_g3177 Chara braunii
Cc04_g01000 Coffea canephora
Cc06_g12570 Coffea canephora
CDE05G0071 Ceratophyllum demersum
CDE05G2781 Ceratophyllum demersum
Ciclev10007846m.g Citrus clementina
Ciclev10025485m.g Citrus clementina
Ciclev10025676m.g Citrus clementina
Ciclev10027240m.g Citrus clementina
Ciclev10027447m.g Citrus clementina
Ciclev10027465m.g Citrus clementina
CiPaw.03G202700 Carya illinoinensis
CiPaw.04G140800 Carya illinoinensis
ClCG03G014810 Citrullus lanatus
COL.COLO4_21224 Corchorus olitorius
COL.COLO4_30810 Corchorus olitorius
Cpa.g.sc261.5 Carica papaya
Cre07.g335300 Chlamydomonas reinhardtii
CsaV3_1G041340 Cucumis sativus L.
CSS0010451 Camellia sinensis var. sinensis
DCAR_023707 Daucus carota
Dinv20406 Davidia involucrata
Dinv25525 Davidia involucrata
Dinv30817 Davidia involucrata
Dinv42422 Davidia involucrata
Dinv42423 Davidia involucrata
Duzib150G0450 Durio zibethinus
Duzib168G0007 Durio zibethinus
Duzib187G1496 Durio zibethinus
ECA232G2125 Erigeron canadensis
ECA240G2788 Erigeron canadensis
EL10Ac8g19017 Beta vulgaris
Eucgr.C00778 Eucalyptus grandis
Eucgr.C03291 Eucalyptus grandis
FAN02G4210 Fragaria x ananassa
FAN09G1723 Fragaria x ananassa
FAN14G2358 Fragaria x ananassa
FAN19G1304 Fragaria x ananassa
FAN23G2039 Fragaria x ananassa
FAN26G0141 Fragaria x ananassa
FAN26G1885 Fragaria x ananassa
FAN28G0749 Fragaria x ananassa
FAN28G1025 Fragaria x ananassa
FvH4_1g09200 Fragaria vesca
FvH4_6g35220 Fragaria vesca
Glyma.13G112700 Glycine max
Glyma.15G181500 Glycine max
Glyma.17G047000 Glycine max
Gohir.A06G079000 Gossypium hirsutum
Gohir.A08G246500 Gossypium hirsutum
Gohir.A09G075300 Gossypium hirsutum
Gohir.A12G040400 Gossypium hirsutum
Gohir.A13G189400 Gossypium hirsutum
Gohir.D06G078350 Gossypium hirsutum
Gohir.D07G083750 Gossypium hirsutum
Gohir.D08G267700 Gossypium hirsutum
Gohir.D09G075000 Gossypium hirsutum
Gohir.D09G141866 Gossypium hirsutum
Gohir.D13G196305 Gossypium hirsutum
Gorai.004G285300 Gossypium raimondii
Gorai.006G090100 Gossypium raimondii
Gorai.006G138500 Gossypium raimondii
Gorai.009G236800 Gossypium raimondii
Gorai.010G091400 Gossypium raimondii
Gorai.013G222600 Gossypium raimondii
GSVIVG01015032001 Vitis vinifera
GSVIVG01016710001 Vitis vinifera
HanXRQChr03g0083201 Helianthus annuus
HanXRQChr06g0178221 Helianthus annuus
HanXRQChr09g0237851 Helianthus annuus
HanXRQChr11g0349241 Helianthus annuus
HanXRQChr15g0497191 Helianthus annuus
Haze_26050 Corylus avellana
Haze_26085 Corylus avellana
Hma1.2p1_0179F.1_g079260 Hydrangea macrophylla
HPP92_009418 Vanilla planifolia
HPP92_016608 Vanilla planifolia
Hund15399 Selenicereus undatus
Lalb_Chr07g0181341 Lupinus albus
Lalb_Chr08g0232771 Lupinus albus
Lalb_Chr11g0074051 Lupinus albus
Lalb_Chr13g0299301 Lupinus albus
Lj4C919T3 Lonicera japonica
Lj4g0026089 Lotus japonicus
Lj5A32G59 Lonicera japonica
Lj5A32T67 Lonicera japonica
Lj6g0022420 Lotus japonicus
Lj7A690T50 Lonicera japonica
Lsat_1_v5_gn_4_91301 Lactuca sativa
Lsat_1_v5_gn_4_95720 Lactuca sativa
Lsat_1_v5_gn_5_139341 Lactuca sativa
Lsat_1_v5_gn_7_35360 Lactuca sativa
Lsat_1_v5_gn_8_86040 Lactuca sativa
Manes.03G043700 Manihot esculenta
Manes.04G148300 Manihot esculenta
Manes.04G149701 Manihot esculenta
Manes.16G091400 Manihot esculenta
Mapoly0035s0037 Marchantia polymorpha
MBI08_g18898_MAGBIO Magnolia biondii
MCO03G333 Micromonas commoda
MD02G1097200 Malus domestica
MD02G1097500 Malus domestica
MD02G1098000 Malus domestica
MD09G1177500 Malus domestica
MD09G1177600 Malus domestica
MD15G1221800 Malus domestica
Medtr2g043530 Medicago truncatula
Medtr4g124880 Medicago truncatula
MELO3C015546.2 Cucumis melo
Migut.J00897 Erythranthe guttata
Migut.L01589 Erythranthe guttata
MSTRG.10490 Avicennia marina
MSTRG.19436 Avicennia marina
MSTRG.26492 Avicennia marina
Nitab4.5_0000073g0360 Nicotiana tabacum
Nitab4.5_0001565g0080 Nicotiana tabacum
Nitab4.5_0002443g0060 Nicotiana tabacum
Nitab4.5_0007773g0040 Nicotiana tabacum
Nn6g35657 Nelumbo nucifera
Nn8g38556 Nelumbo nucifera
Oeu000294.1 Olea europaea
Oeu007428.1 Olea europaea
Oeu008522.1 Olea europaea
Oeu010830.1 Olea europaea
Oeu042061.1 Olea europaea
Oeu055336.2 Olea europaea
Os07g0616200 Oryza sativa ssp. japonica
Peaxi162Scf00038g01959 Petunia axillaris
Peaxi162Scf00191g00123 Petunia axillaris
Peaxi162Scf00928g00230 Petunia axillaris
PGR142G0280 Punica granatum
PGSC0003DMG400002927 Solanum tuberosum
PGSC0003DMG400013579 Solanum tuberosum
PGSC0003DMG400022891 Solanum tuberosum
Phvul.003G128700 Phaseolus vulgaris
Potri.006G138000 Populus trichocarpa
Potri.018G062900 Populus trichocarpa
Pp3c12_20620 Physcomitrium patens
Pp3c13_4190 Physcomitrium patens
Pp3c26_4590 Physcomitrium patens
Pp3c4_25050 Physcomitrium patens
Pp3c4_8490 Physcomitrium patens
PRCOL_00000873 Prasinoderma coloniale
Prupe.3G036900 Prunus persica
Prupe.7G193900 Prunus persica
Psat1g137640 Pisum sativum
Psat4g018240 Pisum sativum
PSO104G0069 Papaver somniferum
PSO386G0084 Papaver somniferum
PSO421G0260 Papaver somniferum
PSO421G0382 Papaver somniferum
PSO724G0493 Papaver somniferum
QL05p003264 Quercus lobata
QL05p003283 Quercus lobata
QL11p002123 Quercus lobata
QL11p002135 Quercus lobata
QL11p002141 Quercus lobata
QL11p011535 Quercus lobata
QL93p0414_0005 Quercus lobata
QL93p0414_0021 Quercus lobata
RcHm_v2.0_Chr2g0095651 Rosa chinensis
RcHm_v2.0_Chr2g0146561 Rosa chinensis
Rhsim03G0226300 Rhododendron simsii
Rhsim13G0127100 Rhododendron simsii
Sabra06G0108100 Salix brachista
Sabra18G0055800 Salix brachista
SalBow5G4980 Salvia bowleyana
SalBow6G1021 Salvia bowleyana
SalBow6G1201 Salvia bowleyana
SalBow6G4660 Salvia bowleyana
Sc08g0008980 Simmondsia chinensis
Sed0007761 Sechium edule
Sed0022404 Sechium edule
Sed0022490 Sechium edule
SEGI_13864 Sequoiadendron giganteum
SEGI_17764 Sequoiadendron giganteum
SEGI_36236 Sequoiadendron giganteum
SGA_v2.0_scaffold21G09542 Striga asiatica
SGA_v2.0_scaffold296G47569 Striga asiatica
SHI39307 Sapria himalayana
SHI39546 Sapria himalayana
SMO146G0232 Selaginella moellendorffii
SMO351G0052 Selaginella moellendorffii
Solyc03g122100.3 Solanum lycopersicum
Solyc03g122120.4 Solanum lycopersicum
Solyc07g042315.1 Solanum lycopersicum
Solyc12g009260.3 Solanum lycopersicum
Sopen03g040890 Solanum pennellii
Sopen03g040910 Solanum pennellii
Sopen07g021960 Solanum pennellii
Sp1g17170 Schrenkiella parvula
Sp5g30100 Schrenkiella parvula
TAR383G0547 Trochodendron aralioides
TAR468G0002 Trochodendron aralioides
TAR624G1377 Trochodendron aralioides
THA.LOC104809050 Tarenaya hassleriana
THA.LOC104813853 Tarenaya hassleriana
THA.LOC104824520 Tarenaya hassleriana
Thecc.06G125500 Theobroma cacao
Thecc.06G125600 Theobroma cacao
Thecc.09G071900 Theobroma cacao
Thhalv10007353m.g Eutrema salsugineum
Thhalv10018368m.g Eutrema salsugineum
TPR.G12575 Trifolium pratense
TPR.G36563 Trifolium pratense
TWI32G0894 Tripterygium wilfordii
TWI34G0470 Tripterygium wilfordii
unitig_8.g3537 Utricularia gibba
vmacro06354 Vaccinium macrocarpon
vmacro17097 Vaccinium macrocarpon
vmacro17098 Vaccinium macrocarpon
vmacro23082 Vaccinium macrocarpon
VMungo1215G0335 Vigna mungo
Zm00001eb109290 Zea mays
Zm00001eb327480 Zea mays
Zm00001eb392890 Zea mays

User provided reference genes

Program Settings