Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p35010 Brassica napus
A06p06670 Brassica napus
A08p34250 Brassica napus
A09p65230 Brassica napus
Aa31LG1G4910 Aethionema arabicum
Aa31LG8G6500 Aethionema arabicum
Actinidia02423 Actinidia chinensis
Actinidia05999 Actinidia chinensis
Actinidia10252 Actinidia chinensis
Actinidia14502 Actinidia chinensis
Actinidia19270 Actinidia chinensis
Actinidia19599 Actinidia chinensis
Actinidia29643 Actinidia chinensis
Ah.05g166800 Amaranthus hybridus
AL1G20612 Arabidopsis lyrata
AL1G20680 Arabidopsis lyrata
AL3G33170 Arabidopsis lyrata
Aqoxy5G01883_Aqoxy5G01884 Aquilegia oxysepala
Aqoxy6G01491 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3C8H84 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7585ZU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9ZS0CG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KWX927 Arachis hypogaea
AT1G09970 Arabidopsis thaliana
AT3G19700 Arabidopsis thaliana
ATR0767G204 Amborella trichopoda
Atru.chr13.923 Acer truncatum
Atru.chr5.2144 Acer truncatum
Atru.chr8.1230 Acer truncatum
AUR62033821 Chenopodium quinoa
AUR62035759 Chenopodium quinoa
BcaB04g20682 Brassica carinata
BcaC07g38566 Brassica carinata
BcaC07g41850 Brassica carinata
BcaC09g48931 Brassica carinata
BolC1t04407H Brassica oleracea
BolC5t29566H Brassica oleracea
BolC8t48964H Brassica oleracea
BolC8t52453H Brassica oleracea
BraA01t03582Z Brassica rapa
BraA06t23881Z Brassica rapa
BraA08t35337Z Brassica rapa
BraA09t41868Z Brassica rapa
C01p44420 Brassica napus
C05p08140 Brassica napus
C08p13330 Brassica napus
C08p49180 Brassica napus
CAN.G1980.2 Capsicum annuum
CAN.G504.67 Capsicum annuum
CAN.G847.5 Capsicum annuum
CANSAT11G2530 Cannabis sativa
CANSAT25G1126 Cannabis sativa
CANSAT25G3834 Cannabis sativa
CARHR010090 Cardamine hirsuta
CARHR095180 Cardamine hirsuta
Carub.0001s0940 Capsella rubella
Carub.0003s1958 Capsella rubella
Ca_00194_v3 Cicer arietinum L.
Ca_15552_v3 Cicer arietinum L.
Cc02_g20390 Coffea canephora
Cc10_g08080 Coffea canephora
CDE01G0019 Ceratophyllum demersum
CDE02G2357 Ceratophyllum demersum
CDE04G3000 Ceratophyllum demersum
CDE06G0157 Ceratophyllum demersum
Cfa004759 Carpinus fangiana
Cfa004760 Carpinus fangiana
Cfa004761 Carpinus fangiana
Cfa020700 Carpinus fangiana
Cfa020701 Carpinus fangiana
Cfa020703 Carpinus fangiana
Ciclev10000155m.g Citrus clementina
Ciclev10014879m.g Citrus clementina
Ciclev10027748m.g Citrus clementina
CiPaw.05G025000 Carya illinoinensis
CiPaw.06G161700 Carya illinoinensis
CiPaw.15G152700 Carya illinoinensis
CiPaw.15G152800 Carya illinoinensis
CiPaw.16G102100 Carya illinoinensis
ClCG02G007400 Citrullus lanatus
ClCG11G014890 Citrullus lanatus
COL.COLO4_17834 Corchorus olitorius
COL.COLO4_35350 Corchorus olitorius
Cpa.g.sc160.4 Carica papaya
Cpa.g.sc160.5 Carica papaya
Cpa.g.sc20.68 Carica papaya
CsaV3_3G048320 Cucumis sativus L.
CsaV3_7G007500 Cucumis sativus L.
CSS0005273 Camellia sinensis var. sinensis
CSS0010345 Camellia sinensis var. sinensis
CSS0017849 Camellia sinensis var. sinensis
CSS0024005 Camellia sinensis var. sinensis
CSS0033403 Camellia sinensis var. sinensis
CSS0035172 Camellia sinensis var. sinensis
CSS0038857 Camellia sinensis var. sinensis
CSS0040647 Camellia sinensis var. sinensis
DCAR_009547 Daucus carota
DCAR_019335 Daucus carota
DCAR_021924 Daucus carota
DCAR_029859 Daucus carota
Dinv09499 Davidia involucrata
Dinv16048 Davidia involucrata
Dinv22027 Davidia involucrata
Dinv44903 Davidia involucrata
Duzib041G0350 Durio zibethinus
Duzib093G0912 Durio zibethinus
Duzib116G0435 Durio zibethinus
Duzib132G1037 Durio zibethinus
Duzib248G0329 Durio zibethinus
ECA234G1867 Erigeron canadensis
ECA240G0636 Erigeron canadensis
ECA246G2641 Erigeron canadensis
EL10Ac1g02304 Beta vulgaris
EL10Ac4g07753 Beta vulgaris
Eucgr.F00467 Eucalyptus grandis
Eucgr.F02181 Eucalyptus grandis
Eucgr.G01123 Eucalyptus grandis
FAN04G1195 Fragaria x ananassa
FAN15G1224 Fragaria x ananassa
FAN18G2741 Fragaria x ananassa
FAN24G0403 Fragaria x ananassa
FAN27G1985 Fragaria x ananassa
FvH4_2g02540 Fragaria vesca
FvH4_5g33590 Fragaria vesca
Glyma.04G088800 Glycine max
Glyma.06G090800 Glycine max
Glyma.13G253300 Glycine max
Gohir.A01G179500 Gossypium hirsutum
Gohir.A02G079000 Gossypium hirsutum
Gohir.A04G127912 Gossypium hirsutum
Gohir.A05G215000 Gossypium hirsutum
Gohir.A05G264050 Gossypium hirsutum
Gohir.A06G028800 Gossypium hirsutum
Gohir.D01G170300 Gossypium hirsutum
Gohir.D02G086900 Gossypium hirsutum
Gohir.D04G172600 Gossypium hirsutum
Gohir.D05G218300 Gossypium hirsutum
Gohir.D05G266401 Gossypium hirsutum
Gohir.D06G027432 Gossypium hirsutum
Gorai.002G211900 Gossypium raimondii
Gorai.005G097600 Gossypium raimondii
Gorai.009G225300 Gossypium raimondii
Gorai.009G278300 Gossypium raimondii
Gorai.010G030600 Gossypium raimondii
Gorai.012G162000 Gossypium raimondii
GSVIVG01036966001 Vitis vinifera
HanXRQChr05g0163641 Helianthus annuus
HanXRQChr09g0250821 Helianthus annuus
HanXRQChr10g0291301 Helianthus annuus
HanXRQChr10g0291311 Helianthus annuus
HanXRQChr10g0291331 Helianthus annuus
HanXRQChr10g0297621 Helianthus annuus
HanXRQChr10g0297631 Helianthus annuus
HanXRQChr10g0298061 Helianthus annuus
HanXRQChr14g0445161 Helianthus annuus
Haze_10358 Corylus avellana
Haze_12655 Corylus avellana
Haze_19007 Corylus avellana
Haze_19008 Corylus avellana
Haze_19009 Corylus avellana
Haze_19013 Corylus avellana
Hma1.2p1_1078F.1_g254810 Hydrangea macrophylla
Hma1.2p1_1078F.1_g254820 Hydrangea macrophylla
Hma1.2p1_2819F.1_g329000 Hydrangea macrophylla
HPP92_012268 Vanilla planifolia
HPP92_018710 Vanilla planifolia
HPP92_018789 Vanilla planifolia
HPP92_018790 Vanilla planifolia
HPP92_018803 Vanilla planifolia
Hund05238 Selenicereus undatus
Lalb_Chr08g0242781 Lupinus albus
Lalb_Chr11g0064731 Lupinus albus
Lalb_Chr18g0060211 Lupinus albus
Lalb_Chr20g0122711 Lupinus albus
Lj1g0009505 Lotus japonicus
Lj1g0017804 Lotus japonicus
Lj4A746T58 Lonicera japonica
Lj4A80T29 Lonicera japonica
Lj5A223T104 Lonicera japonica
Lsat_1_v5_gn_5_110561 Lactuca sativa
Lsat_1_v5_gn_6_107920 Lactuca sativa
Lsat_1_v5_gn_9_114580 Lactuca sativa
Manes.05G186500 Manihot esculenta
Manes.07G049200 Manihot esculenta
Manes.10G090500 Manihot esculenta
Manes.18G054100 Manihot esculenta
MBI16_g33607_MAGBIO Magnolia biondii
MD05G1112600 Malus domestica
MD08G1210000 Malus domestica
MD10G1115100 Malus domestica
MD15G1394100 Malus domestica
Medtr2g010470 Medicago truncatula
Medtr3g110860 Medicago truncatula
MELO3C003487.2 Cucumis melo
MELO3C018552.2 Cucumis melo
Migut.N02824 Erythranthe guttata
MSTRG.22193 Avicennia marina
MSTRG.24409 Avicennia marina
Nitab4.5_0000377g0050 Nicotiana tabacum
Nitab4.5_0001477g0180 Nicotiana tabacum
Nitab4.5_0005609g0060 Nicotiana tabacum
Nitab4.5_0006982g0010 Nicotiana tabacum
Nn1g05940 Nelumbo nucifera
Nn5g28014 Nelumbo nucifera
Nn5g29124 Nelumbo nucifera
Oeu046400.1 Olea europaea
Oeu046410.1 Olea europaea
Oeu059138.1 Olea europaea
Oeu059875.1 Olea europaea
Peaxi162Scf00299g00347 Petunia axillaris
Peaxi162Scf00321g00513 Petunia axillaris
PGR031G2221 Punica granatum
PGR042G1539 Punica granatum
PGR083G1018 Punica granatum
PGSC0003DMG400004966 Solanum tuberosum
PGSC0003DMG400005103 Solanum tuberosum
Phvul.006G198200 Phaseolus vulgaris
Phvul.009G114500 Phaseolus vulgaris
Potri.002G106800 Populus trichocarpa
Potri.009G081800 Populus trichocarpa
Prupe.1G542300 Prunus persica
Prupe.8G088500 Prunus persica
Prupe.8G157200 Prunus persica
Psat1g212240 Pisum sativum
Psat5g019120 Pisum sativum
PSO210G5969 Papaver somniferum
PSO447G0110 Papaver somniferum
QL08p004609 Quercus lobata
QL08p006762 Quercus lobata
QL11p027050 Quercus lobata
QL11p027678 Quercus lobata
QL12p040369 Quercus lobata
QL12p040375 Quercus lobata
QL12p040471 Quercus lobata
RcHm_v2.0_Chr6g0246351 Rosa chinensis
RcHm_v2.0_Chr7g0217331 Rosa chinensis
RcHm_v2.0_Chr7g0232471 Rosa chinensis
Rhsim06G0067800 Rhododendron simsii
Rhsim07G0215100 Rhododendron simsii
Rhsim11G0146000 Rhododendron simsii
Sabra09G0063400 Salix brachista
SalBow2G0568 Salvia bowleyana
Sc02g0008340 Simmondsia chinensis
Sc26g0004330 Simmondsia chinensis
Sed0002140 Sechium edule
Sed0015822 Sechium edule
SEGI_14389 Sequoiadendron giganteum
SEGI_28073 Sequoiadendron giganteum
SEGI_30584 Sequoiadendron giganteum
SEGI_30630 Sequoiadendron giganteum
SEGI_35620 Sequoiadendron giganteum
SEGI_36696 Sequoiadendron giganteum
SGA_v2.0_scaffold152G36898 Striga asiatica
SGA_v2.0_scaffold28G11860 Striga asiatica
SHI29444 Sapria himalayana
SMO200G0138 Selaginella moellendorffii
SMO367G0577 Selaginella moellendorffii
Solyc01g106500.4 Solanum lycopersicum
Solyc04g076980.3 Solanum lycopersicum
Solyc04g076990.3 Solanum lycopersicum
Solyc05g023990.2 Solanum lycopersicum
Sopen01g048860 Solanum pennellii
Sopen11g021050 Solanum pennellii
Sp1g08630 Schrenkiella parvula
Sp3g17740 Schrenkiella parvula
TAR381G1696 Trochodendron aralioides
THA.LOC104816781 Tarenaya hassleriana
THA.LOC104823685 Tarenaya hassleriana
Thecc.02G034800 Theobroma cacao
Thecc.08G079400 Theobroma cacao
Thecc.08G193700 Theobroma cacao
Thhalv10006696m.g Eutrema salsugineum
Thhalv10022054m.g Eutrema salsugineum
TPR.G12416 Trifolium pratense
TWI12G1195 Tripterygium wilfordii
TWI56G0321 Tripterygium wilfordii
TWI59G0548 Tripterygium wilfordii
vmacro01914 Vaccinium macrocarpon
vmacro04617 Vaccinium macrocarpon
vmacro21380 Vaccinium macrocarpon
vmacro21391 Vaccinium macrocarpon
VMungo0540G0509 Vigna mungo
VMungo1309G1019 Vigna mungo
Zm00001eb134290 Zea mays

User provided reference genes

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