Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p17790 Brassica napus
A10p13220 Brassica napus
Aa31LG3G11930 Aethionema arabicum
Aa31LG5G11890 Aethionema arabicum
Actinidia03653 Actinidia chinensis
Actinidia19344 Actinidia chinensis
Actinidia30373 Actinidia chinensis
Actinidia33089 Actinidia chinensis
Ah.02g110800 Amaranthus hybridus
Ah.08g214150 Amaranthus hybridus
AL7G26370 Arabidopsis lyrata
AL8G31620 Arabidopsis lyrata
Aqoxy3G01098 Aquilegia oxysepala
Aqoxy4G02306 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0M132R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.11D7LJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J2QQC8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JZ966I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K82E85 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VAAE0N Arachis hypogaea
AT4G26540 Arabidopsis thaliana
AT5G56040 Arabidopsis thaliana
ATR0763G060 Amborella trichopoda
Atru.chr9.2537 Acer truncatum
Atru.chr9.2538 Acer truncatum
AUR62008174 Chenopodium quinoa
AUR62017156 Chenopodium quinoa
AUR62028751 Chenopodium quinoa
AUR62035648 Chenopodium quinoa
BcaB08g35968 Brassica carinata
BcaC04g20166 Brassica carinata
BcaC09g50653 Brassica carinata
BcaC09g50720 Brassica carinata
BcaNung02405 Brassica carinata
BolC1t02182H Brassica oleracea
BolC9t57563H Brassica oleracea
BraA01t01735Z Brassica rapa
BraA10t43420Z Brassica rapa
C01p22510 Brassica napus
C02p15630 Brassica napus
C09p47110 Brassica napus
CAN.G338.1 Capsicum annuum
CAN.G623.39 Capsicum annuum
CANSAT11G2693 Cannabis sativa
CARHR234120 Cardamine hirsuta
CARHR269410 Cardamine hirsuta
Carub.0007s1434 Capsella rubella
Carub.0008s1637 Capsella rubella
Ca_06418_v3 Cicer arietinum L.
Ca_14838_v3 Cicer arietinum L.
Ca_21944_v3 Cicer arietinum L.
Cc04_g12550 Coffea canephora
Cc05_g15350 Coffea canephora
CDE02G0010 Ceratophyllum demersum
CDE02G0594 Ceratophyllum demersum
CDE02G2371 Ceratophyllum demersum
CDE02G3612 Ceratophyllum demersum
CDE06G1787 Ceratophyllum demersum
Cfa019174 Carpinus fangiana
Cfa021897 Carpinus fangiana
Ciclev10007329m.g Citrus clementina
Ciclev10018599m.g Citrus clementina
CiPaw.11G022900 Carya illinoinensis
CiPaw.11G207400 Carya illinoinensis
ClCG01G013340 Citrullus lanatus
ClCG06G017180 Citrullus lanatus
ClCG09G021570 Citrullus lanatus
COL.COLO4_07746 Corchorus olitorius
COL.COLO4_30119 Corchorus olitorius
Cpa.g.sc12.102 Carica papaya
Cpa.g.sc153.18 Carica papaya
CsaV3_1G001300 Cucumis sativus L.
CsaV3_1G008710 Cucumis sativus L.
CsaV3_7G021540 Cucumis sativus L.
CSS0005598 Camellia sinensis var. sinensis
CSS0014130 Camellia sinensis var. sinensis
CSS0017564 Camellia sinensis var. sinensis
CSS0018599 Camellia sinensis var. sinensis
CSS0019724 Camellia sinensis var. sinensis
CSS0020079 Camellia sinensis var. sinensis
CSS0034539 Camellia sinensis var. sinensis
CSS0036782 Camellia sinensis var. sinensis
CSS0043719 Camellia sinensis var. sinensis
CSS0047399 Camellia sinensis var. sinensis
DCAR_013260 Daucus carota
DCAR_016470 Daucus carota
DCAR_017064 Daucus carota
Dinv20621 Davidia involucrata
Dinv38557 Davidia involucrata
Dinv38558 Davidia involucrata
Dinv40888 Davidia involucrata
Duzib205G0245 Durio zibethinus
Duzib213G0426 Durio zibethinus
Duzib268G0065 Durio zibethinus
ECA232G4809 Erigeron canadensis
ECA236G4295 Erigeron canadensis
ECA246G4183 Erigeron canadensis
EL10Ac2g03057 Beta vulgaris
EL10Ac2g03059 Beta vulgaris
EL10Ac2g03060 Beta vulgaris
EL10Ac2g03066 Beta vulgaris
EL10Ac2g03068 Beta vulgaris
EL10Ac2g03071 Beta vulgaris
EL10Ac2g03072 Beta vulgaris
EL10Ac2g03086 Beta vulgaris
EL10Ac2g03087 Beta vulgaris
EL10Ac4g07519 Beta vulgaris
EL10Ac5g10693 Beta vulgaris
Eucgr.B00241 Eucalyptus grandis
Eucgr.F02022 Eucalyptus grandis
Eucgr.F02025 Eucalyptus grandis
Eucgr.F03669 Eucalyptus grandis
FAN08G1511 Fragaria x ananassa
FAN11G1363 Fragaria x ananassa
FAN13G1955 Fragaria x ananassa
FAN16G2482 Fragaria x ananassa
FAN18G2694 Fragaria x ananassa
FAN21G2286 Fragaria x ananassa
FAN25G0006 Fragaria x ananassa
FvH4_3g42190 Fragaria vesca
FvH4_5g05780 Fragaria vesca
Glyma.02G302600 Glycine max
Glyma.05G039900 Glycine max
Glyma.08G333200 Glycine max
Glyma.14G011500 Glycine max
Glyma.17G087000 Glycine max
Glyma.18G073600 Glycine max
Gohir.A01G094200 Gossypium hirsutum
Gohir.A03G090300 Gossypium hirsutum
Gohir.A04G004600 Gossypium hirsutum
Gohir.D01G078700 Gossypium hirsutum
Gohir.D02G118200 Gossypium hirsutum
Gohir.D05G385300 Gossypium hirsutum
Gorai.002G103300 Gossypium raimondii
Gorai.009G452000 Gossypium raimondii
GSVIVG01007688001 Vitis vinifera
GSVIVG01014750001 Vitis vinifera
HanXRQChr05g0160301 Helianthus annuus
HanXRQChr08g0232771 Helianthus annuus
HanXRQChr11g0348331 Helianthus annuus
HanXRQChr16g0504601 Helianthus annuus
Haze_07551 Corylus avellana
Haze_09873 Corylus avellana
Hma1.2p1_0046F.1_g026810 Hydrangea macrophylla
Hma1.2p1_0193F.1_g083980 Hydrangea macrophylla
HPP92_018908 Vanilla planifolia
HPP92_018909 Vanilla planifolia
HPP92_019699 Vanilla planifolia
Hund01855 Selenicereus undatus
Hund02767 Selenicereus undatus
Hund23009 Selenicereus undatus
Lalb_Chr04g0247741 Lupinus albus
Lalb_Chr07g0182851 Lupinus albus
Lalb_Chr15g0082371 Lupinus albus
Lalb_Chr18g0050171 Lupinus albus
Lj1A895T71 Lonicera japonica
Lj4g0025263 Lotus japonicus
Lj5C127T7 Lonicera japonica
Lj6g0008569 Lotus japonicus
Lj8A181T56 Lonicera japonica
Lj9A445T77 Lonicera japonica
LjContig00081g0022185 Lotus japonicus
Lsat_1_v5_gn_4_76040 Lactuca sativa
Lsat_1_v5_gn_5_2281 Lactuca sativa
Manes.01G004000 Manihot esculenta
Manes.05G203100 Manihot esculenta
Manes.06G107900 Manihot esculenta
MBI15_g19870_MAGBIO Magnolia biondii
MBI16_g14605_MAGBIO Magnolia biondii
MBI16_g23861_MAGBIO Magnolia biondii
MD03G1036900 Malus domestica
MD06G1170200 Malus domestica
MD11G1038100 Malus domestica
Medtr3g060880 Medicago truncatula
Medtr4g105370 Medicago truncatula
Medtr5g096530 Medicago truncatula
MELO3C002286.2 Cucumis melo
MELO3C013195.2 Cucumis melo
MELO3C026278.2 Cucumis melo
Migut.D01984 Erythranthe guttata
Migut.M01624 Erythranthe guttata
MSTRG.11479 Avicennia marina
MSTRG.15810 Avicennia marina
MSTRG.4358 Avicennia marina
MSTRG.7017 Avicennia marina
Nitab4.5_0000152g0300 Nicotiana tabacum
Nitab4.5_0001284g0060 Nicotiana tabacum
Nitab4.5_0001479g0010 Nicotiana tabacum
Nitab4.5_0003130g0020 Nicotiana tabacum
Nn1g07581 Nelumbo nucifera
Nn1g07720 Nelumbo nucifera
Nn4g22668 Nelumbo nucifera
Oeu017996.1 Olea europaea
Oeu023443.1 Olea europaea
Oeu024710.1 Olea europaea
Os01g0170300 Oryza sativa ssp. japonica
Os05g0169600 Oryza sativa ssp. japonica
Os08g0493800 Oryza sativa ssp. japonica
Os09g0479200 Oryza sativa ssp. japonica
Peaxi162Scf00089g01625 Petunia axillaris
Peaxi162Scf00232g00023 Petunia axillaris
PGR031G3078 Punica granatum
PGR083G0098 Punica granatum
PGR083G2685 Punica granatum
PGSC0003DMG400018171 Solanum tuberosum
PGSC0003DMG400022264 Solanum tuberosum
Phvul.003G203100 Phaseolus vulgaris
Phvul.006G059284 Phaseolus vulgaris
Phvul.008G281500 Phaseolus vulgaris
Potri.001G467300 Populus trichocarpa
Potri.011G164800 Populus trichocarpa
Potri.012G088100 Populus trichocarpa
Potri.015G080800 Populus trichocarpa
Prupe.5G169700 Prunus persica
Prupe.6G029000 Prunus persica
Prupe.6G030100 Prunus persica
Prupe.6G082800 Prunus persica
Psat2g006320 Pisum sativum
Psat4g058720 Pisum sativum
Psat5g166200 Pisum sativum
PSO017G6608 Papaver somniferum
PSO478G3337 Papaver somniferum
PSO541G3774 Papaver somniferum
PSO675G4680 Papaver somniferum
QL08p002611 Quercus lobata
QL10p008613 Quercus lobata
QL10p008726 Quercus lobata
QL10p008745 Quercus lobata
RcHm_v2.0_Chr5g0075461 Rosa chinensis
RcHm_v2.0_Chr7g0193041 Rosa chinensis
Rhsim04G0010200 Rhododendron simsii
Rhsim08G0175100 Rhododendron simsii
Sabra11G0140500 Salix brachista
Sabra12G0062900 Salix brachista
Sabra15G0104800 Salix brachista
Sabra16G0317100 Salix brachista
SalBow6G0355 Salvia bowleyana
SalBow6G0916 Salvia bowleyana
SalBow8G2764 Salvia bowleyana
SalBow8G2985 Salvia bowleyana
Sc03g0011650 Simmondsia chinensis
Sc10g0010160 Simmondsia chinensis
Sed0003199 Sechium edule
Sed0009667 Sechium edule
Sed0013605 Sechium edule
Sed0015381 Sechium edule
Sed0027662 Sechium edule
SGA_v2.0_scaffold7G03523 Striga asiatica
SGA_v2.0_scaffold7G04150 Striga asiatica
Solyc03g112580.3 Solanum lycopersicum
Solyc07g065860.3 Solanum lycopersicum
Sopen03g031640 Solanum pennellii
Sopen07g034050 Solanum pennellii
Sp6g17860 Schrenkiella parvula
Sp7g24490 Schrenkiella parvula
TAR029G0003 Trochodendron aralioides
TAR371G0110 Trochodendron aralioides
TAR622G1155 Trochodendron aralioides
TAR624G0861 Trochodendron aralioides
TAR627G0116 Trochodendron aralioides
TAR629G1807 Trochodendron aralioides
THA.LOC104811686 Tarenaya hassleriana
Thecc.03G024200 Theobroma cacao
Thecc.07G007300 Theobroma cacao
Thhalv10012511m.g Eutrema salsugineum
Thhalv10024272m.g Eutrema salsugineum
TPR.G1251 Trifolium pratense
TPR.G1273 Trifolium pratense
TPR.G17954 Trifolium pratense
TPR.G37496 Trifolium pratense
TPR.G37505 Trifolium pratense
TWI38G0578 Tripterygium wilfordii
TWI39G1109 Tripterygium wilfordii
vmacro09620 Vaccinium macrocarpon
vmacro19418 Vaccinium macrocarpon
vmacro23266 Vaccinium macrocarpon
VMungo0540G1196 Vigna mungo
VMungo0647G1047 Vigna mungo
VMungo1215G3253 Vigna mungo
Zm00001eb101560 Zea mays
Zm00001eb199400 Zea mays
Zm00001eb283400 Zea mays
Zm00001eb316130 Zea mays
Zm00001eb336650 Zea mays

User provided reference genes

Program Settings