Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p38590 Brassica napus
A09p50240 Brassica napus
A10p30620 Brassica napus
Aa31LG10G12230 Aethionema arabicum
Aa31sc105G20 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1005 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.993 Anthoceros agrestis
Actinidia00012 Actinidia chinensis
Actinidia01478 Actinidia chinensis
Actinidia07429 Actinidia chinensis
Actinidia14293 Actinidia chinensis
Actinidia26396 Actinidia chinensis
Actinidia40280 Actinidia chinensis
Ah.04g153600 Amaranthus hybridus
Ah.13g074880 Amaranthus hybridus
AL5G38880 Arabidopsis lyrata
AL8G22490 Arabidopsis lyrata
Aqoxy1G02547 Aquilegia oxysepala
Aqoxy5G00750 Aquilegia oxysepala
Aqoxy7G02164 Aquilegia oxysepala
Aqoxy7G03718 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.GX02YE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I6XRGW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PHM66I Arachis hypogaea
AT3G57340 Arabidopsis thaliana
AT5G05750 Arabidopsis thaliana
AT5G49060 Arabidopsis thaliana
ATR0322G047 Amborella trichopoda
ATR0796G008 Amborella trichopoda
Atru.chr4.2869 Acer truncatum
Atru.chr7.1222 Acer truncatum
AUR62018081 Chenopodium quinoa
AUR62040368 Chenopodium quinoa
BcaB07g34215 Brassica carinata
BcaC06g32284 Brassica carinata
BcaC06g32351 Brassica carinata
BcaC07g40054 Brassica carinata
BcaC07g40055 Brassica carinata
BcaNung06180 Brassica carinata
BolC7t44490H Brassica oleracea
BolC8t50884H Brassica oleracea
BolC9t59872H Brassica oleracea
BraA06t26774Z Brassica rapa
BraA09t40474Z Brassica rapa
BraA10t45102Z Brassica rapa
C08p32730 Brassica napus
C09p71080 Brassica napus
CAN.G449.37 Capsicum annuum
CAN.G484.38 Capsicum annuum
CAN.G975.5 Capsicum annuum
CANSAT11G2034 Cannabis sativa
CANSAT78G0821 Cannabis sativa
CARHR167530 Cardamine hirsuta
CARHR182660 Cardamine hirsuta
CARHR207530 Cardamine hirsuta
Carub.0005s2419 Capsella rubella
Carub.0006s0465 Capsella rubella
Carub.0008s0889 Capsella rubella
Ca_01927_v3 Cicer arietinum L.
Ca_03165_v3 Cicer arietinum L.
CBR_g20169 Chara braunii
Cc03_g01770 Coffea canephora
CDE06G0959 Ceratophyllum demersum
CDE07G1801 Ceratophyllum demersum
Cfa003360 Carpinus fangiana
Ciclev10003237m.g Citrus clementina
Ciclev10005299m.g Citrus clementina
Ciclev10008750m.g Citrus clementina
Ciclev10017189m.g Citrus clementina
CiPaw.01G147600 Carya illinoinensis
CiPaw.04G170400 Carya illinoinensis
CiPaw.04G170600 Carya illinoinensis
ClCG06G005080 Citrullus lanatus
ClCG06G011010 Citrullus lanatus
COL.COLO4_13850 Corchorus olitorius
COL.COLO4_15642 Corchorus olitorius
Cpa.g.sc16.182 Carica papaya
Cpa.g.sc75.45 Carica papaya
Cre05.g232000 Chlamydomonas reinhardtii
Cre09.g416100 Chlamydomonas reinhardtii
CsaV3_1G003880 Cucumis sativus L.
CsaV3_1G029930 Cucumis sativus L.
CsaV3_6G022320 Cucumis sativus L.
CsaV3_6G024080 Cucumis sativus L.
CsaV3_6G024100 Cucumis sativus L.
CsaV3_UNG044250 Cucumis sativus L.
CSS0015754 Camellia sinensis var. sinensis
CSS0015980 Camellia sinensis var. sinensis
CSS0019087 Camellia sinensis var. sinensis
CSS0022037 Camellia sinensis var. sinensis
CSS0022258 Camellia sinensis var. sinensis
CSS0030868 Camellia sinensis var. sinensis
CSS0043323 Camellia sinensis var. sinensis
CSS0049598 Camellia sinensis var. sinensis
DCAR_009194 Daucus carota
DCAR_014879 Daucus carota
DCAR_030522 Daucus carota
Dinv29758 Davidia involucrata
Dinv36534 Davidia involucrata
Dinv41518 Davidia involucrata
Dinv44368 Davidia involucrata
Duzib150G1321 Durio zibethinus
Duzib168G1131 Durio zibethinus
Duzib212G0114 Durio zibethinus
ECA234G3444 Erigeron canadensis
ECA240G1205 Erigeron canadensis
ECA240G3062 Erigeron canadensis
EL10Ac3g06614 Beta vulgaris
Eucgr.B01595 Eucalyptus grandis
Eucgr.C01157 Eucalyptus grandis
FAN07G2894 Fragaria x ananassa
FAN12G1747 Fragaria x ananassa
FAN12G3491 Fragaria x ananassa
FAN17G1472 Fragaria x ananassa
FAN19G3152 Fragaria x ananassa
FAN23G0167 Fragaria x ananassa
FAN26G0469 Fragaria x ananassa
FAN26G3043 Fragaria x ananassa
FAN28G0695 Fragaria x ananassa
FvH4_1g03490 Fragaria vesca
FvH4_4g18330 Fragaria vesca
Glyma.04G148200 Glycine max
Glyma.06G217000 Glycine max
Glyma.09G044000 Glycine max
Glyma.15G149100 Glycine max
Gohir.A02G049800 Gossypium hirsutum
Gohir.A05G017000 Gossypium hirsutum
Gohir.A13G199500 Gossypium hirsutum
Gohir.D02G054900 Gossypium hirsutum
Gohir.D05G017900 Gossypium hirsutum
Gohir.D13G205000 Gossypium hirsutum
Gorai.005G060800 Gossypium raimondii
Gorai.009G018300 Gossypium raimondii
Gorai.013G233900 Gossypium raimondii
GSVIVG01015518001 Vitis vinifera
GSVIVG01035148001 Vitis vinifera
HanXRQChr03g0089311 Helianthus annuus
HanXRQChr03g0089321 Helianthus annuus
HanXRQChr09g0242301 Helianthus annuus
HanXRQChr13g0419941 Helianthus annuus
Haze_01187 Corylus avellana
Hma1.2p1_0018F.1_g012510 Hydrangea macrophylla
Hma1.2p1_0665F.1_g199020 Hydrangea macrophylla
Hma1.2p1_1185F.1_g265010 Hydrangea macrophylla
HPP92_006922 Vanilla planifolia
HPP92_021813 Vanilla planifolia
Hund24890 Selenicereus undatus
Lalb_Chr07g0178911 Lupinus albus
Lalb_Chr08g0234471 Lupinus albus
Lalb_Chr12g0197871 Lupinus albus
Lalb_Chr13g0301921 Lupinus albus
Lalb_Chr15g0083481 Lupinus albus
Lalb_Chr18g0051621 Lupinus albus
Lj1g0002155 Lotus japonicus
Lj3C821T4 Lonicera japonica
Lj3C821T6 Lonicera japonica
Lj6g0016891 Lotus japonicus
Lj6P678T29 Lonicera japonica
Lsat_1_v5_gn_5_150461 Lactuca sativa
Lsat_1_v5_gn_5_97200 Lactuca sativa
Lsat_1_v5_gn_6_95721 Lactuca sativa
Lsat_1_v5_gn_7_45581 Lactuca sativa
Manes.03G196600 Manihot esculenta
Manes.06G049100 Manihot esculenta
Manes.14G131700 Manihot esculenta
Mapoly0003s0073 Marchantia polymorpha
MCO06G258 Micromonas commoda
MCO13G236 Micromonas commoda
MD02G1033900 Malus domestica
MD13G1167300 Malus domestica
MD15G1174700 Malus domestica
MD16G1168100 Malus domestica
Medtr2g436560 Medicago truncatula
Medtr2g436580 Medicago truncatula
MELO3C010356.2 Cucumis melo
MELO3C010357.2 Cucumis melo
MELO3C021324.2 Cucumis melo
MELO3C021325.2 Cucumis melo
Migut.G00149 Erythranthe guttata
Migut.G00775 Erythranthe guttata
MSTRG.10101 Avicennia marina
MSTRG.9792 Avicennia marina
Nitab4.5_0000570g0180 Nicotiana tabacum
Nitab4.5_0000960g0010 Nicotiana tabacum
Nitab4.5_0001941g0060 Nicotiana tabacum
Nitab4.5_0003949g0050 Nicotiana tabacum
Nn3g21477 Nelumbo nucifera
Nn8g39432 Nelumbo nucifera
Oeu001106.1 Olea europaea
Oeu018465.1 Olea europaea
Oeu063358.1 Olea europaea
Os01g0556400 Oryza sativa ssp. japonica
Os05g0364500 Oryza sativa ssp. japonica
Peaxi162Scf00256g00024 Petunia axillaris
Peaxi162Scf01533g00005 Petunia axillaris
PGR031G2319 Punica granatum
PGR142G4309 Punica granatum
PGSC0003DMG400004706 Solanum tuberosum
PGSC0003DMG400011340 Solanum tuberosum
PGSC0003DMG400014967 Solanum tuberosum
PGSC0003DMG400023537 Solanum tuberosum
Phvul.009G197400 Phaseolus vulgaris
Phvul.009G248900 Phaseolus vulgaris
Potri.006G153700 Populus trichocarpa
Potri.010G013200 Populus trichocarpa
Pp3c7_20040 Physcomitrium patens
Pp3c7_20090 Physcomitrium patens
PRCOL_00003384 Prasinoderma coloniale
Prupe.1G134600 Prunus persica
Prupe.7G241200 Prunus persica
Psat1g027760 Pisum sativum
Psat1g154960 Pisum sativum
PSO170G1851 Papaver somniferum
PSO210G0019 Papaver somniferum
PSO455G0120 Papaver somniferum
PSO832G1852 Papaver somniferum
QL02p088143 Quercus lobata
QL06p009582 Quercus lobata
QL12p006576 Quercus lobata
RcHm_v2.0_Chr2g0088701 Rosa chinensis
RcHm_v2.0_Chr4g0422801 Rosa chinensis
Rhsim01G0073200 Rhododendron simsii
Rhsim01G0073900 Rhododendron simsii
Rhsim03G0247800 Rhododendron simsii
Rhsim04G0223600 Rhododendron simsii
Rhsim07G0188800 Rhododendron simsii
Rhsim09G0007200 Rhododendron simsii
Sabra06G0121700 Salix brachista
Sabra10G0008400 Salix brachista
SalBow2G2352 Salvia bowleyana
SalBow6G4192 Salvia bowleyana
SalBow8G4782 Salvia bowleyana
Sc13g0003390 Simmondsia chinensis
Sed0005402 Sechium edule
Sed0009507 Sechium edule
Sed0020689 Sechium edule
SEGI_07828 Sequoiadendron giganteum
SEGI_32676 Sequoiadendron giganteum
SEGI_39155 Sequoiadendron giganteum
SGA_v2.0_scaffold102G29906 Striga asiatica
SGA_v2.0_scaffold20G09140 Striga asiatica
SGA_v2.0_scaffold428G51517 Striga asiatica
SHI26132 Sapria himalayana
SMO367G0943 Selaginella moellendorffii
Solyc01g066770.3 Solanum lycopersicum
Solyc05g018610.3 Solanum lycopersicum
Sopen01g028380 Solanum pennellii
Sopen05g015780 Solanum pennellii
Sopen05g032770 Solanum pennellii
Sopen12g034180 Solanum pennellii
Sp2g19430 Schrenkiella parvula
Sp5g05260 Schrenkiella parvula
Sp6g37150 Schrenkiella parvula
TAR370G0007 Trochodendron aralioides
TAR383G0949 Trochodendron aralioides
TAR636G2776 Trochodendron aralioides
THA.LOC104802691 Tarenaya hassleriana
THA.LOC104808996 Tarenaya hassleriana
THA.LOC104827421 Tarenaya hassleriana
Thecc.04G286200 Theobroma cacao
Thecc.09G124900 Theobroma cacao
Thecc.09G125000 Theobroma cacao
Thecc.09G125100 Theobroma cacao
Thhalv10004478m.g Eutrema salsugineum
Thhalv10006378m.g Eutrema salsugineum
Thhalv10015797m.g Eutrema salsugineum
TPR.G21257 Trifolium pratense
TPR.G22355 Trifolium pratense
TPR.G9566 Trifolium pratense
TWI09G0395 Tripterygium wilfordii
TWI32G0240 Tripterygium wilfordii
TWI34G0992 Tripterygium wilfordii
TWI63G0689 Tripterygium wilfordii
unitig_37.g12038 Utricularia gibba
unitig_46.g18691 Utricularia gibba
vmacro06126 Vaccinium macrocarpon
vmacro08162 Vaccinium macrocarpon
vmacro15226 Vaccinium macrocarpon
vmacro20547 Vaccinium macrocarpon
VMungo1309G0376 Vigna mungo
VMungo1309G2083 Vigna mungo
VMungo1309G3032 Vigna mungo
Zm00001eb162560 Zea mays
Zm00001eb342290 Zea mays
Zm00001eb346620 Zea mays

User provided reference genes

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