Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p34340 Brassica napus
A03p53050 Brassica napus
A05p28590 Brassica napus
Aa31LG6G3910 Aethionema arabicum
Aa31LG8G7150 Aethionema arabicum
Actinidia35342 Actinidia chinensis
Ah.04g165880 Amaranthus hybridus
AL3G34060 Arabidopsis lyrata
AL7G31910 Arabidopsis lyrata
Aqoxy1G02174 Aquilegia oxysepala
Aqoxy1G02175 Aquilegia oxysepala
Aqoxy1G02176 Aquilegia oxysepala
Aqoxy1G02177 Aquilegia oxysepala
Aqoxy1G02178 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.22WBGR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8P9XRD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B0CFPV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PG586I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W7920A Arachis hypogaea
AT3G20340 Arabidopsis thaliana
AT4G21920 Arabidopsis thaliana
ATR0752G060 Amborella trichopoda
Atru.chr10.2213 Acer truncatum
Atru.chr2.3399 Acer truncatum
Atru.chr2.3400 Acer truncatum
AUR62012700 Chenopodium quinoa
AUR62015772 Chenopodium quinoa
AUR62015773 Chenopodium quinoa
AUR62015774 Chenopodium quinoa
AUR62020442 Chenopodium quinoa
AUR62020443 Chenopodium quinoa
AUR62020444 Chenopodium quinoa
AUR62021958 Chenopodium quinoa
BcaB04g20658 Brassica carinata
BcaB06g26099 Brassica carinata
BcaC01g03566 Brassica carinata
BcaC05g28318 Brassica carinata
BcaC05g28320 Brassica carinata
BcaC09g48988 Brassica carinata
BcaNung00825 Brassica carinata
BcaNung01717 Brassica carinata
BolC1t04334H Brassica oleracea
BolC3t17394H Brassica oleracea
BolC5t33118H Brassica oleracea
BolC7t45644H Brassica oleracea
BraA01t03531Z Brassica rapa
BraA03t14377Z Brassica rapa
BraA05t21736Z Brassica rapa
C01p43750 Brassica napus
C03p51080 Brassica napus
C05p44000 Brassica napus
C07p51480 Brassica napus
CANSAT56G1803 Cannabis sativa
CARHR095990 Cardamine hirsuta
CARHR228720 Cardamine hirsuta
Carub.0003s2029 Capsella rubella
Carub.0007s1942 Capsella rubella
Ca_00640_v3 Cicer arietinum L.
Ca_00651_v3 Cicer arietinum L.
Ca_01715_v3 Cicer arietinum L.
Ca_21088_v3 Cicer arietinum L.
Ca_30196_v3 Cicer arietinum L.
Ca_30684_v3 Cicer arietinum L.
Cc05_g13710 Coffea canephora
Cc09_g01730 Coffea canephora
Cc09_g09730 Coffea canephora
CDE02G3016 Ceratophyllum demersum
CDE05G0485 Ceratophyllum demersum
CDE05G1751 Ceratophyllum demersum
CDE05G3459 Ceratophyllum demersum
Cfa000232 Carpinus fangiana
Cfa020350 Carpinus fangiana
Ciclev10009680m.g Citrus clementina
CiPaw.09G091000 Carya illinoinensis
CiPaw.10G070500 Carya illinoinensis
CiPaw.11G189000 Carya illinoinensis
CiPaw.12G129500 Carya illinoinensis
ClCG01G022040 Citrullus lanatus
ClCG03G004770 Citrullus lanatus
ClCG05G014310 Citrullus lanatus
ClCG10G005340 Citrullus lanatus
COL.COLO4_09658 Corchorus olitorius
Cpa.g.sc152.6 Carica papaya
Cpa.g.sc97.7 Carica papaya
CsaV3_1G010810 Cucumis sativus L.
CsaV3_3G005050 Cucumis sativus L.
CsaV3_3G005060 Cucumis sativus L.
CsaV3_6G049100 Cucumis sativus L.
CSS0019776 Camellia sinensis var. sinensis
DCAR_004216 Daucus carota
DCAR_008152 Daucus carota
DCAR_022560 Daucus carota
Dinv13888 Davidia involucrata
Dinv22264 Davidia involucrata
Dinv40751 Davidia involucrata
Duzib160G0150 Durio zibethinus
Duzib192G0001 Durio zibethinus
Duzib213G0915 Durio zibethinus
Duzib235G0239 Durio zibethinus
Duzib268G1655 Durio zibethinus
ECA240G4169 Erigeron canadensis
ECA246G0494 Erigeron canadensis
EL10Ac4g07810 Beta vulgaris
EL10Ac4g07811 Beta vulgaris
Eucgr.D01318 Eucalyptus grandis
Eucgr.E04060 Eucalyptus grandis
Eucgr.E04061 Eucalyptus grandis
Eucgr.E04062 Eucalyptus grandis
Eucgr.E04063 Eucalyptus grandis
Eucgr.E04064 Eucalyptus grandis
Eucgr.E04065 Eucalyptus grandis
Eucgr.E04066 Eucalyptus grandis
Eucgr.F03465 Eucalyptus grandis
FAN01G1682 Fragaria x ananassa
FAN08G3684 Fragaria x ananassa
FAN11G2929 Fragaria x ananassa
FAN16G0504 Fragaria x ananassa
FAN21G2959 Fragaria x ananassa
FAN25G1645 Fragaria x ananassa
FAN25G2410 Fragaria x ananassa
FAN26G1625 Fragaria x ananassa
FvH4_3g02220 Fragaria vesca
FvH4_3g22640 Fragaria vesca
Glyma.02G290900 Glycine max
Glyma.07G259700 Glycine max
Glyma.07G259800 Glycine max
Glyma.07G259900 Glycine max
Glyma.08G316000 Glycine max
Glyma.13G205200 Glycine max
Glyma.15G107300 Glycine max
Glyma.17G014100 Glycine max
Glyma.17G014200 Glycine max
Glyma.17G014400 Glycine max
Glyma.17G014500 Glycine max
Glyma.17G014600 Glycine max
Glyma.18G096700 Glycine max
Gohir.A01G079300 Gossypium hirsutum
Gohir.A04G016900 Gossypium hirsutum
Gohir.A05G169900 Gossypium hirsutum
Gohir.A06G207800 Gossypium hirsutum
Gohir.A10G013000 Gossypium hirsutum
Gohir.D01G066350 Gossypium hirsutum
Gohir.D05G173050 Gossypium hirsutum
Gohir.D05G369300 Gossypium hirsutum
Gohir.D06G213500 Gossypium hirsutum
Gohir.D10G012900 Gossypium hirsutum
Gorai.002G088300 Gossypium raimondii
Gorai.009G178200 Gossypium raimondii
Gorai.009G438000 Gossypium raimondii
Gorai.010G252600 Gossypium raimondii
Gorai.011G014600 Gossypium raimondii
Haze_06793 Corylus avellana
Haze_09674 Corylus avellana
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla
Lalb_Chr04g0248431 Lupinus albus
Lalb_Chr07g0177261 Lupinus albus
Lalb_Chr07g0177271 Lupinus albus
Lalb_Chr15g0081141 Lupinus albus
Lalb_Chr15g0087561 Lupinus albus
Lalb_Chr18g0056321 Lupinus albus
Lj4g0000389 Lotus japonicus
Lj4g0005888 Lotus japonicus
Lj6g0015217 Lotus japonicus
Lj6g0026915 Lotus japonicus
LjContig00272g0022666 Lotus japonicus
Lsat_1_v5_gn_4_60581 Lactuca sativa
Lsat_1_v5_gn_5_6000 Lactuca sativa
Lsat_1_v5_gn_9_93960 Lactuca sativa
Manes.03G129100 Manihot esculenta
Manes.15G072100 Manihot esculenta
Manes.16G007700 Manihot esculenta
Manes.17G038600 Manihot esculenta
MBI02_g07158_MAGBIO Magnolia biondii
MBI02_g07159_MAGBIO Magnolia biondii
MBI02_g40709_MAGBIO Magnolia biondii
MBI18_g22612_MAGBIO Magnolia biondii
MD05G1345200 Malus domestica
MD10G1320500 Malus domestica
MD11G1218800 Malus domestica
Medtr2g023010 Medicago truncatula
Medtr3g051510 Medicago truncatula
Medtr3g051530 Medicago truncatula
Medtr3g051570 Medicago truncatula
Medtr3g051610 Medicago truncatula
Medtr4g132000 Medicago truncatula
Medtr4g132010 Medicago truncatula
Medtr5g092710 Medicago truncatula
MELO3C002460.2 Cucumis melo
MELO3C007385.2 Cucumis melo
MELO3C025367.2 Cucumis melo
MELO3C025368.2 Cucumis melo
Migut.H01829 Erythranthe guttata
Migut.M01767 Erythranthe guttata
MSTRG.12971 Avicennia marina
MSTRG.6917 Avicennia marina
Nitab4.5_0000653g0010 Nicotiana tabacum
Nitab4.5_0009398g0020 Nicotiana tabacum
Nitab4.5_0009781g0010 Nicotiana tabacum
Nitab4.5_0009995g0010 Nicotiana tabacum
Nitab4.5_0009995g0020 Nicotiana tabacum
Nn1g03544 Nelumbo nucifera
Nn5g29371 Nelumbo nucifera
Oeu007582.1 Olea europaea
Oeu042936.1 Olea europaea
Oeu063916.1 Olea europaea
Peaxi162Scf01097g00039 Petunia axillaris
PGR004G0474 Punica granatum
PGR031G1144 Punica granatum
PGR042G1468 Punica granatum
PGSC0003DMG400001089 Solanum tuberosum
PGSC0003DMG400005078 Solanum tuberosum
PGSC0003DMG400019879 Solanum tuberosum
PGSC0003DMG400029820 Solanum tuberosum
PGSC0003DMG400031876 Solanum tuberosum
PGSC0003DMG400032292 Solanum tuberosum
Phvul.003G077900 Phaseolus vulgaris
Phvul.003G078000 Phaseolus vulgaris
Phvul.006G043100 Phaseolus vulgaris
Phvul.006G150100 Phaseolus vulgaris
Phvul.008G267000 Phaseolus vulgaris
Potri.001G435400 Populus trichocarpa
Potri.004G015900 Populus trichocarpa
Potri.011G003100 Populus trichocarpa
Potri.011G139400 Populus trichocarpa
Prupe.4G021600 Prunus persica
Prupe.4G212400 Prunus persica
Psat1g181240 Pisum sativum
Psat4g006720 Pisum sativum
Psat4g006760 Pisum sativum
Psat4g006800 Pisum sativum
Psat4g006840 Pisum sativum
Psat4g006880 Pisum sativum
Psat4g006960 Pisum sativum
Psat4g007000 Pisum sativum
PSO541G1700 Papaver somniferum
PSO675G3145 Papaver somniferum
QL05p073377 Quercus lobata
QL08p010341 Quercus lobata
RcHm_v2.0_Chr5g0003291 Rosa chinensis
RcHm_v2.0_Chr5g0039411 Rosa chinensis
Rhsim06G0216700 Rhododendron simsii
RhsimUnG0109700 Rhododendron simsii
RhsimUnG0250800 Rhododendron simsii
Sabra04G0008200 Salix brachista
Sabra11G0125300 Salix brachista
Sabra11G0125400 Salix brachista
Sabra16G0289700 Salix brachista
Sc03g0008600 Simmondsia chinensis
Sc16g0006080 Simmondsia chinensis
Sc17g0007340 Simmondsia chinensis
Sed0005061 Sechium edule
Sed0007461 Sechium edule
Sed0010919 Sechium edule
Sed0016637 Sechium edule
Sed0026688 Sechium edule
Solyc12g005000.1 Solanum lycopersicum
Sopen02g011120 Solanum pennellii
Sopen03g005540 Solanum pennellii
Sopen12g001010 Solanum pennellii
Sp3g18370 Schrenkiella parvula
Sp7g20110 Schrenkiella parvula
TAR624G0488 Trochodendron aralioides
TAR624G1270 Trochodendron aralioides
TAR626G1667 Trochodendron aralioides
TAR627G0593 Trochodendron aralioides
THA.LOC104812967 Tarenaya hassleriana
THA.LOC104817856 Tarenaya hassleriana
Thecc.06G219600 Theobroma cacao
Thecc.07G037400 Theobroma cacao
Thhalv10021814m.g Eutrema salsugineum
Thhalv10026602m.g Eutrema salsugineum
TPR.G16595 Trifolium pratense
TPR.G34803 Trifolium pratense
TPR.G36054 Trifolium pratense
TPR.G36987 Trifolium pratense
TPR.G37017 Trifolium pratense
TPR.G9935 Trifolium pratense
TWI38G1232 Tripterygium wilfordii
TWI38G1886 Tripterygium wilfordii
unitig_85.g27325 Utricularia gibba
vmacro03644 Vaccinium macrocarpon
VMungo0540G1774 Vigna mungo
VMungo1215G0105 Vigna mungo
VMungo1215G0276 Vigna mungo
VMungo1215G2206 Vigna mungo

User provided reference genes

Program Settings