Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p01550 Brassica napus
A01p24340 Brassica napus
A03p47650 Brassica napus
A07p24740 Brassica napus
A08p22640 Brassica napus
A09p51990 Brassica napus
Aa31LG10G13960 Aethionema arabicum
Aa31LG6G14290 Aethionema arabicum
Actinidia12647 Actinidia chinensis
Actinidia27114 Actinidia chinensis
Actinidia33503 Actinidia chinensis
Ah.05g173310 Amaranthus hybridus
Ah.13g073450 Amaranthus hybridus
AL5G30160 Arabidopsis lyrata
AL5G41740 Arabidopsis lyrata
AL7G13360 Arabidopsis lyrata
Aqoxy1G00245 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.724KQE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EQ3HVT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K6L3AX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L505QV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NW4DRM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q1GHIM Arachis hypogaea
AT3G50040 Arabidopsis thaliana
AT3G59670 Arabidopsis thaliana
AT4G37440 Arabidopsis thaliana
ATR0605G240 Amborella trichopoda
ATR0691G305 Amborella trichopoda
Atru.chr11.1691 Acer truncatum
Atru.chr3.217 Acer truncatum
Atru.chr3.228 Acer truncatum
Atru.chr4.1423 Acer truncatum
AUR62002399 Chenopodium quinoa
AUR62013734 Chenopodium quinoa
AUR62023419 Chenopodium quinoa
AUR62023788 Chenopodium quinoa
BcaB02g07453 Brassica carinata
BcaB03g12343 Brassica carinata
BcaB05g23182 Brassica carinata
BcaC01g00403 Brassica carinata
BcaC06g33113 Brassica carinata
BcaC06g33115 Brassica carinata
BcaC06g33277 Brassica carinata
BcaC06g33278 Brassica carinata
BcaC07g40498 Brassica carinata
BcaC08g45000 Brassica carinata
BcaC09g49996 Brassica carinata
BcaNung03658 Brassica carinata
BolC1t00162H Brassica oleracea
BolC1t02971H Brassica oleracea
BolC3t20177H Brassica oleracea
BolC6t37795H Brassica oleracea
BolC7t45083H Brassica oleracea
BolC8t51069H Brassica oleracea
BraA01t00147Z Brassica rapa
BraA01t02347Z Brassica rapa
BraA03t13877Z Brassica rapa
BraA07t30120Z Brassica rapa
BraA08t34231Z Brassica rapa
BraA09t40632Z Brassica rapa
C01p01680 Brassica napus
C01p30270 Brassica napus
C03p79350 Brassica napus
C06p26320 Brassica napus
C07p45620 Brassica napus
C08p34670 Brassica napus
CAN.G1577.3 Capsicum annuum
CAN.G316.13 Capsicum annuum
CANSAT21G0943 Cannabis sativa
CANSAT56G1496 Cannabis sativa
CARHR159110 Cardamine hirsuta
CARHR170040 Cardamine hirsuta
CARHR245830 Cardamine hirsuta
Carub.0005s1639 Capsella rubella
Carub.0005s2639 Capsella rubella
Carub.0007s0285 Capsella rubella
Ca_04039_v3 Cicer arietinum L.
Ca_14059_v3 Cicer arietinum L.
Ca_14061_v3 Cicer arietinum L.
Ca_18636_v3 Cicer arietinum L.
Ca_24159_v3 Cicer arietinum L.
Cc02_g25000 Coffea canephora
Cc03_g14160 Coffea canephora
CDE02G0106 Ceratophyllum demersum
CDE05G0919 Ceratophyllum demersum
Cfa011084 Carpinus fangiana
Cfa015270 Carpinus fangiana
Ciclev10011548m.g Citrus clementina
Ciclev10019728m.g Citrus clementina
Ciclev10027327m.g Citrus clementina
CiPaw.01G170300 Carya illinoinensis
CiPaw.02G139900 Carya illinoinensis
CiPaw.13G027500 Carya illinoinensis
ClCG05G000430 Citrullus lanatus
ClCG07G015140 Citrullus lanatus
COL.COLO4_04394 Corchorus olitorius
COL.COLO4_11516 Corchorus olitorius
COL.COLO4_32816 Corchorus olitorius
Cpa.g.sc6.63 Carica papaya
Cpa.g.sc6.65 Carica papaya
Cpa.g.sc9.369 Carica papaya
CsaV3_3G007600 Cucumis sativus L.
CsaV3_4G002710 Cucumis sativus L.
CSS0029984 Camellia sinensis var. sinensis
CSS0046222 Camellia sinensis var. sinensis
CSS0048255 Camellia sinensis var. sinensis
DCAR_015836 Daucus carota
DCAR_025069 Daucus carota
DCAR_027522 Daucus carota
Dinv33207 Davidia involucrata
Dinv43629 Davidia involucrata
Dinv44070 Davidia involucrata
Duzib128G0596 Durio zibethinus
Duzib147G0748 Durio zibethinus
Duzib151G0293 Durio zibethinus
Duzib177G0369 Durio zibethinus
Duzib187G0840 Durio zibethinus
Duzib212G0177 Durio zibethinus
Duzib264G0444 Durio zibethinus
ECA234G2223 Erigeron canadensis
ECA248G1193 Erigeron canadensis
EL10Ac1g00773 Beta vulgaris
EL10Ac3g06095 Beta vulgaris
Eucgr.E01573 Eucalyptus grandis
Eucgr.L00004 Eucalyptus grandis
FAN01G1068 Fragaria x ananassa
FAN03G2646 Fragaria x ananassa
FAN04G0476 Fragaria x ananassa
FAN06G3230 Fragaria x ananassa
FAN06G4808 Fragaria x ananassa
FAN08G0481 Fragaria x ananassa
FAN10G1746 Fragaria x ananassa
FAN10G2350 Fragaria x ananassa
FAN13G1531 Fragaria x ananassa
FvH4_5g30050 Fragaria vesca
FvH4_7g09930 Fragaria vesca
Glyma.02G137800 Glycine max
Glyma.03G113800 Glycine max
Glyma.07G112900 Glycine max
Glyma.07G207500 Glycine max
Glyma.18G253000 Glycine max
Gohir.A02G153800 Gossypium hirsutum
Gohir.A08G221642 Gossypium hirsutum
Gohir.A10G144000 Gossypium hirsutum
Gohir.A11G218400 Gossypium hirsutum
Gohir.D03G026500 Gossypium hirsutum
Gohir.D08G240300 Gossypium hirsutum
Gohir.D10G123000 Gossypium hirsutum
Gohir.D11G205200 Gossypium hirsutum
Gorai.003G028200 Gossypium raimondii
Gorai.004G255600 Gossypium raimondii
Gorai.007G220100 Gossypium raimondii
Gorai.011G135500 Gossypium raimondii
GSVIVG01018258001 Vitis vinifera
GSVIVG01038145001 Vitis vinifera
HanXRQChr01g0023121 Helianthus annuus
HanXRQChr08g0230061 Helianthus annuus
HanXRQChr16g0520321 Helianthus annuus
Haze_01357 Corylus avellana
Haze_02818 Corylus avellana
Hma1.2p1_0108F.1_g051740 Hydrangea macrophylla
HPP92_006226 Vanilla planifolia
Hund03204 Selenicereus undatus
Hund17083 Selenicereus undatus
Hund27404 Selenicereus undatus
Lalb_Chr05g0218891 Lupinus albus
Lalb_Chr07g0195491 Lupinus albus
Lalb_Chr13g0290551 Lupinus albus
Lalb_Chr13g0304511 Lupinus albus
Lalb_Chr13g0304601 Lupinus albus
Lalb_Chr16g0384411 Lupinus albus
Lalb_Chr19g0126551 Lupinus albus
Lj1g0009163 Lotus japonicus
Lj3g0001565 Lotus japonicus
Lj4g0015409 Lotus japonicus
Lj6A211T19 Lonicera japonica
Lj6A222T13 Lonicera japonica
Lsat_1_v5_gn_6_67760 Lactuca sativa
Manes.04G035100 Manihot esculenta
Manes.12G109700 Manihot esculenta
MBI04_g13617_MAGBIO Magnolia biondii
MBI04_g13618_MAGBIO Magnolia biondii
MD04G1049200 Malus domestica
MD07G1104500 Malus domestica
MD17G1177900 Malus domestica
Medtr4g087350 Medicago truncatula
Medtr4g087360 Medicago truncatula
Medtr6g066120 Medicago truncatula
Medtr7g007590 Medicago truncatula
Medtr8g006760 Medicago truncatula
Medtr8g047200 Medicago truncatula
MELO3C005981.2 Cucumis melo
MELO3C017769.2 Cucumis melo
Migut.B01544 Erythranthe guttata
Migut.N01750 Erythranthe guttata
Migut.N03064 Erythranthe guttata
MSTRG.22034 Avicennia marina
Nitab4.5_0000474g0080 Nicotiana tabacum
Nitab4.5_0000793g0010 Nicotiana tabacum
Nitab4.5_0002245g0140 Nicotiana tabacum
Nitab4.5_0003819g0090 Nicotiana tabacum
Nn7g36180 Nelumbo nucifera
Nn7g36814 Nelumbo nucifera
Nn7g36818 Nelumbo nucifera
Oeu015717.1 Olea europaea
Oeu050333.1 Olea europaea
Oeu063228.1 Olea europaea
Os01g0316900 Oryza sativa ssp. japonica
Os05g0365200 Oryza sativa ssp. japonica
Os05g0366300 Oryza sativa ssp. japonica
Peaxi162Scf00011g00238 Petunia axillaris
Peaxi162Scf00483g00067 Petunia axillaris
PGR004G0824 Punica granatum
PGR042G1105 Punica granatum
PGSC0003DMG400008716 Solanum tuberosum
PGSC0003DMG400023785 Solanum tuberosum
Phvul.003G296900 Phaseolus vulgaris
Phvul.008G045900 Phaseolus vulgaris
Potri.005G144800 Populus trichocarpa
Potri.007G051100 Populus trichocarpa
Potri.013G127100 Populus trichocarpa
Potri.019G112201 Populus trichocarpa
Prupe.1G207400 Prunus persica
Prupe.2G128100 Prunus persica
Psat0s2862g0040 Pisum sativum
Psat2g071200 Pisum sativum
Psat3g194640 Pisum sativum
Psat4g225280 Pisum sativum
Psat5g204520 Pisum sativum
Psat5g303600 Pisum sativum
Psat7g120120 Pisum sativum
PSO339G2753 Papaver somniferum
PSO384G5057 Papaver somniferum
QL04p030673 Quercus lobata
QL10p055924 Quercus lobata
RcHm_v2.0_Chr1g0347491 Rosa chinensis
RcHm_v2.0_Chr1g0347521 Rosa chinensis
RcHm_v2.0_Chr7g0224241 Rosa chinensis
Rhsim01G0139500 Rhododendron simsii
Rhsim09G0009700 Rhododendron simsii
Sabra05G0115600 Salix brachista
Sabra07G0045200 Salix brachista
Sabra13G0106100 Salix brachista
Sabra19G0108200 Salix brachista
SalBow5G2443 Salvia bowleyana
SalBow6G1888 Salvia bowleyana
Sc07g0007150 Simmondsia chinensis
Sc23g0005100 Simmondsia chinensis
Sed0000664 Sechium edule
Sed0014065 Sechium edule
SEGI_16627 Sequoiadendron giganteum
SGA_v2.0_scaffold153G36911 Striga asiatica
SGA_v2.0_scaffold19G08846 Striga asiatica
SGA_v2.0_scaffold43G16534 Striga asiatica
SMO137G0079 Selaginella moellendorffii
Solyc01g104350.3 Solanum lycopersicum
Solyc03g062900.3 Solanum lycopersicum
Sopen01g046790 Solanum pennellii
Sopen03g015180 Solanum pennellii
Sp5g03510 Schrenkiella parvula
Sp5g12070 Schrenkiella parvula
Sp7g35130 Schrenkiella parvula
SpUn0961_0010 Schrenkiella parvula
TAR633G2789 Trochodendron aralioides
TAR636G2390 Trochodendron aralioides
TAR636G2725 Trochodendron aralioides
THA.LOC104804014 Tarenaya hassleriana
THA.LOC104807615 Tarenaya hassleriana
THA.LOC104819250 Tarenaya hassleriana
THA.LOC104827484 Tarenaya hassleriana
Thecc.01G066900 Theobroma cacao
Thecc.04G165400 Theobroma cacao
Thecc.05G224300 Theobroma cacao
Thhalv10005896m.g Eutrema salsugineum
Thhalv10010406m.g Eutrema salsugineum
Thhalv10025086m.g Eutrema salsugineum
TPR.G12265 Trifolium pratense
TPR.G26206 Trifolium pratense
TWI09G0490 Tripterygium wilfordii
TWI38G1803 Tripterygium wilfordii
TWI73G0027 Tripterygium wilfordii
unitig_26.g8867 Utricularia gibba
vmacro00694 Vaccinium macrocarpon
vmacro21055 Vaccinium macrocarpon
VMungo0251G0850 Vigna mungo
VMungo1383G1846 Vigna mungo
Zm00001eb130690 Zea mays
Zm00001eb285530 Zea mays

User provided reference genes

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