Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p15570 Brassica napus
A07p07400 Brassica napus
Aa31LG9G4720 Aethionema arabicum
Aa31sc63G70 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2978 Anthoceros agrestis
Actinidia07766 Actinidia chinensis
Actinidia10440 Actinidia chinensis
Actinidia13407 Actinidia chinensis
Actinidia30078 Actinidia chinensis
Actinidia37591 Actinidia chinensis
Ah.08g214260 Amaranthus hybridus
Ah.11g047390 Amaranthus hybridus
AL1G39450 Arabidopsis lyrata
AL2G28080 Arabidopsis lyrata
AL3G40590 Arabidopsis lyrata
Aqoxy3G03754 Aquilegia oxysepala
Aqoxy5G00075 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.KKI3E8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KR6SVQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LH3A9J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S5WF1L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T08VJF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VT94RC Arachis hypogaea
AT1G26300 Arabidopsis thaliana
AT1G69030 Arabidopsis thaliana
AT3G24820 Arabidopsis thaliana
ATR0691G157 Amborella trichopoda
ATR0824G131 Amborella trichopoda
Atru.chr11.1556 Acer truncatum
Atru.chr5.2112 Acer truncatum
Atru.chr9.600 Acer truncatum
AUR62008910 Chenopodium quinoa
AUR62031800 Chenopodium quinoa
AUR62032140 Chenopodium quinoa
AUR62039666 Chenopodium quinoa
BcaB06g26699 Brassica carinata
BcaC03g15026 Brassica carinata
BcaC03g15027 Brassica carinata
BcaC06g35761 Brassica carinata
BolC2t08640H Brassica oleracea
BolC7t41589H Brassica oleracea
BraA02t06618Z Brassica rapa
BraA07t28527Z Brassica rapa
C02p25710 Brassica napus
C07p11170 Brassica napus
CAN.G648.15 Capsicum annuum
CAN.G982.41 Capsicum annuum
CANSAT64G1161 Cannabis sativa
CANSAT80G1161 Cannabis sativa
CARHR025620 Cardamine hirsuta
CARHR061900 Cardamine hirsuta
CARHR101170 Cardamine hirsuta
Carub.0002s1564 Capsella rubella
Carub.0003s2523 Capsella rubella
Ca_02745_v3 Cicer arietinum L.
Ca_05071_v3 Cicer arietinum L.
Ca_20081_v3 Cicer arietinum L.
Ca_21753_v3 Cicer arietinum L.
Cc01_g17040 Coffea canephora
Cc04_g08230 Coffea canephora
CDE02G0496 Ceratophyllum demersum
CDE04G3594 Ceratophyllum demersum
CDE05G3114 Ceratophyllum demersum
CDE10G0826 Ceratophyllum demersum
Cfa008849 Carpinus fangiana
Ciclev10022517m.g Citrus clementina
Ciclev10024225m.g Citrus clementina
Ciclev10032260m.g Citrus clementina
CiPaw.03G149400 Carya illinoinensis
CiPaw.05G121400 Carya illinoinensis
CiPaw.06G095200 Carya illinoinensis
ClCG05G023530 Citrullus lanatus
ClCG06G015400 Citrullus lanatus
ClCG07G001910 Citrullus lanatus
COL.COLO4_04563 Corchorus olitorius
COL.COLO4_28855 Corchorus olitorius
Cpa.g.sc289.4 Carica papaya
Cpa.g.sc3.227 Carica papaya
Cpa.g.sc8.157 Carica papaya
Cre06.g291250 Chlamydomonas reinhardtii
CsaV3_1G003300 Cucumis sativus L.
CsaV3_3G029900 Cucumis sativus L.
CsaV3_5G033490 Cucumis sativus L.
CSS0013724 Camellia sinensis var. sinensis
CSS0027328 Camellia sinensis var. sinensis
CSS0029037 Camellia sinensis var. sinensis
DCAR_010176 Daucus carota
DCAR_012641 Daucus carota
DCAR_014021 Daucus carota
Dinv04650 Davidia involucrata
Dinv17463 Davidia involucrata
Dinv19205 Davidia involucrata
Dinv34019 Davidia involucrata
Dinv38638 Davidia involucrata
Duzib084G1155 Durio zibethinus
Duzib133G0390 Durio zibethinus
Duzib138G1378 Durio zibethinus
Duzib248G0233 Durio zibethinus
Duzib251G0785 Durio zibethinus
ECA233G0016 Erigeron canadensis
ECA246G2178 Erigeron canadensis
ECA248G2271 Erigeron canadensis
EL10Ac5g11193 Beta vulgaris
EL10Ac7g17835 Beta vulgaris
Eucgr.B00640 Eucalyptus grandis
Eucgr.G02420 Eucalyptus grandis
Eucgr.K02168 Eucalyptus grandis
FAN07G0142 Fragaria x ananassa
FAN08G2550 Fragaria x ananassa
FAN12G0557 Fragaria x ananassa
FAN13G0050 Fragaria x ananassa
FAN18G1400 Fragaria x ananassa
FAN22G0623 Fragaria x ananassa
FvH4_2g19070 Fragaria vesca
FvH4_4g29270 Fragaria vesca
FvH4_5g13370 Fragaria vesca
Glyma.01G065100 Glycine max
Glyma.02G122900 Glycine max
Glyma.05G018000 Glycine max
Glyma.17G081900 Glycine max
Glyma.18G153000 Glycine max
Gohir.A07G058400 Gossypium hirsutum
Gohir.A11G137600 Gossypium hirsutum
Gohir.A12G159400 Gossypium hirsutum
Gohir.A13G088300 Gossypium hirsutum
Gohir.D07G063300 Gossypium hirsutum
Gohir.D11G144000 Gossypium hirsutum
Gohir.D12G162700 Gossypium hirsutum
Gohir.D13G085700 Gossypium hirsutum
Gorai.001G066800 Gossypium raimondii
Gorai.007G154200 Gossypium raimondii
Gorai.008G175300 Gossypium raimondii
Gorai.013G097600 Gossypium raimondii
GSVIVG01008159001 Vitis vinifera
GSVIVG01028638001 Vitis vinifera
HanXRQChr01g0015121 Helianthus annuus
HanXRQChr03g0066641 Helianthus annuus
HanXRQChr08g0215611 Helianthus annuus
Haze_11857 Corylus avellana
Haze_24792 Corylus avellana
Haze_24794 Corylus avellana
Haze_24796 Corylus avellana
Haze_24799 Corylus avellana
Haze_24800 Corylus avellana
Hma1.2p1_0060F.1_g032700 Hydrangea macrophylla
Hma1.2p1_0226F.1_g095720 Hydrangea macrophylla
Hma1.2p1_0226F.1_g095730 Hydrangea macrophylla
Hma1.2p1_0428F.1_g150810 Hydrangea macrophylla
HPP92_007228 Vanilla planifolia
HPP92_017966 Vanilla planifolia
Hund09961 Selenicereus undatus
Lalb_Chr10g0099181 Lupinus albus
Lalb_Chr12g0197381 Lupinus albus
Lalb_Chr12g0209681 Lupinus albus
Lalb_Chr17g0341481 Lupinus albus
Lj1g0005443 Lotus japonicus
Lj1g0025419 Lotus japonicus
Lj2C1131G8 Lonicera japonica
Lj2g0028243 Lotus japonicus
Lj3g0000860 Lotus japonicus
Lj3g0026716 Lotus japonicus
Lj5A137G54 Lonicera japonica
Lj6A773T132 Lonicera japonica
Lj9A437G48 Lonicera japonica
Lj9A437G49 Lonicera japonica
Lsat_1_v5_gn_5_179481 Lactuca sativa
Lsat_1_v5_gn_5_24600 Lactuca sativa
Lsat_1_v5_gn_8_36981 Lactuca sativa
Manes.06G079300 Manihot esculenta
Manes.13G045600 Manihot esculenta
Manes.14G089400 Manihot esculenta
Manes.14G090500 Manihot esculenta
Mapoly0015s0016 Marchantia polymorpha
MBI11_g04276_MAGBIO Magnolia biondii
MBI14_g34640_MAGBIO Magnolia biondii
MD05G1175500 Malus domestica
MD10G1164600 Malus domestica
MD13G1056300 Malus domestica
MD16G1055200 Malus domestica
Medtr4g020080 Medicago truncatula
Medtr4g110020 Medicago truncatula
Medtr5g048180 Medicago truncatula
MELO3C012169.2 Cucumis melo
MELO3C017255.2 Cucumis melo
MELO3C026997.2 Cucumis melo
Migut.D00536 Erythranthe guttata
Migut.D01608 Erythranthe guttata
MSTRG.12492 Avicennia marina
MSTRG.22949 Avicennia marina
Nitab4.5_0000045g0160 Nicotiana tabacum
Nitab4.5_0000208g0010 Nicotiana tabacum
Nitab4.5_0003009g0010 Nicotiana tabacum
Nitab4.5_0003312g0060 Nicotiana tabacum
Nitab4.5_0005994g0040 Nicotiana tabacum
Nn1g07851 Nelumbo nucifera
Nn3g17546 Nelumbo nucifera
Nn4g23546 Nelumbo nucifera
Oeu010197.3 Olea europaea
Oeu031935.1 Olea europaea
Oeu057229.1 Olea europaea
Oeu057230.1 Olea europaea
Os02g0726400 Oryza sativa ssp. japonica
Os04g0662000 Oryza sativa ssp. japonica
Peaxi162Scf00017g03280 Petunia axillaris
Peaxi162Scf00107g01915 Petunia axillaris
Peaxi162Scf00119g00014 Petunia axillaris
PGR044G2512 Punica granatum
PGR083G2706 Punica granatum
PGR119G2372 Punica granatum
PGSC0003DMG402002368 Solanum tuberosum
PGSC0003DMG403024620 Solanum tuberosum
Phvul.003G038100 Phaseolus vulgaris
Phvul.003G182000 Phaseolus vulgaris
Phvul.010G010800 Phaseolus vulgaris
Potri.002G242200 Populus trichocarpa
Potri.008G111900 Populus trichocarpa
Potri.010G137900 Populus trichocarpa
Pp3c12_14690 Physcomitrium patens
Pp3c4_2250 Physcomitrium patens
PRCOL_00004382 Prasinoderma coloniale
Prupe.1G293800 Prunus persica
Prupe.8G203200 Prunus persica
Psat2g088280 Pisum sativum
Psat4g045720 Pisum sativum
Psat7g240240 Pisum sativum
PSO063G3807 Papaver somniferum
PSO170G2832 Papaver somniferum
PSO764G0348 Papaver somniferum
PSO782G2177 Papaver somniferum
QL03p073315 Quercus lobata
QL09p054545 Quercus lobata
QL10p020809 Quercus lobata
RcHm_v2.0_Chr4g0437321 Rosa chinensis
RcHm_v2.0_Chr6g0284891 Rosa chinensis
RcHm_v2.0_Chr7g0183761 Rosa chinensis
Rhsim08G0142400 Rhododendron simsii
Rhsim09G0121900 Rhododendron simsii
Rhsim13G0044900 Rhododendron simsii
Sabra02G0184500 Salix brachista
Sabra08G0084600 Salix brachista
SalBow2G1685 Salvia bowleyana
SalBow5G4518 Salvia bowleyana
Sc12g0006870 Simmondsia chinensis
Sc17g0002330 Simmondsia chinensis
Sc17g0002380 Simmondsia chinensis
Sed0005180 Sechium edule
Sed0011469 Sechium edule
Sed0020266 Sechium edule
SEGI_11777 Sequoiadendron giganteum
SEGI_34299 Sequoiadendron giganteum
SGA_v2.0_scaffold25G10949 Striga asiatica
SGA_v2.0_scaffold313G48290 Striga asiatica
SMO146G0267 Selaginella moellendorffii
SMO236G0051 Selaginella moellendorffii
Solyc03g114740.4 Solanum lycopersicum
Solyc12g038630.2 Solanum lycopersicum
Sopen03g033820 Solanum pennellii
Sopen09g024000 Solanum pennellii
Sopen12g018900 Solanum pennellii
Sp3g22560 Schrenkiella parvula
Sp5g24140 Schrenkiella parvula
SpUn0027_0040 Schrenkiella parvula
TAR362G0660 Trochodendron aralioides
TAR629G3389 Trochodendron aralioides
THA.LOC104821990 Tarenaya hassleriana
Thecc.01G226200 Theobroma cacao
Thecc.02G322500 Theobroma cacao
Thecc.03G109400 Theobroma cacao
Thhalv10002684m.g Eutrema salsugineum
Thhalv10018843m.g Eutrema salsugineum
TPR.G17883 Trifolium pratense
TPR.G2039 Trifolium pratense
TPR.G38536 Trifolium pratense
TWI18G0623 Tripterygium wilfordii
TWI31G1386 Tripterygium wilfordii
TWI36G0876 Tripterygium wilfordii
TWI75G0640 Tripterygium wilfordii
unitig_22.g6638 Utricularia gibba
unitig_899.g15239 Utricularia gibba
vmacro02756 Vaccinium macrocarpon
vmacro02757 Vaccinium macrocarpon
vmacro10472 Vaccinium macrocarpon
vmacro17661 Vaccinium macrocarpon
VMungo1215G0611 Vigna mungo
VMungo1215G2580 Vigna mungo
Zm00001eb189530 Zea mays
Zm00001eb238360 Zea mays
Zm00001eb253320 Zea mays
Zm00001eb432800 Zea mays

User provided reference genes

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